Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
11:42:41 (214710): wrapper (7.7.26015): starting
11:42:41 (214710): wrapper: running run_atlas (--nthreads 4)
[2026-02-23 11:42:41] Arguments: --nthreads 4
[2026-02-23 11:42:41] Threads: 4
[2026-02-23 11:42:41] Checking for CVMFS
[2026-02-23 11:42:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-23 11:42:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-23 11:42:41] Running cvmfs_config stat atlas.cern.ch
[2026-02-23 11:42:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-23 11:42:41] 2.13.3.0 11582 10738 45972 156552 3 1 28913511 33554433 0 130560 0 5003236 99.986 395396 277 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-23 11:42:41] CVMFS is ok
[2026-02-23 11:42:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-23 11:42:41] Checking for apptainer binary...
[2026-02-23 11:42:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-23 11:42:41] Running /usr/bin/apptainer --version
[2026-02-23 11:42:41] apptainer version 1.4.5
[2026-02-23 11:42:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-23 11:42:41] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-23 11:42:41] apptainer works
[2026-02-23 11:42:41] Set ATHENA_PROC_NUMBER=4
[2026-02-23 11:42:41] Set ATHENA_CORE_NUMBER=4
[2026-02-23 11:42:41] Starting ATLAS job with PandaID=7011032722
[2026-02-23 11:42:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-23 13:09:01]  *** The last 200 lines of the pilot log: ***
[2026-02-23 13:09:01]  direct_access_lan=False
[2026-02-23 13:09:01]  direct_access_wan=False
[2026-02-23 13:09:01]  domain=
[2026-02-23 13:09:01]  filesize=300273
[2026-02-23 13:09:01]  filetype=log
[2026-02-23 13:09:01]  guid=ee9fc9dd-4369-497b-b022-e687597834d4
[2026-02-23 13:09:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-23 13:09:01]  is_altstaged=None
[2026-02-23 13:09:01]  is_tar=False
[2026-02-23 13:09:01]  lfn=log.48508763._004889.job.log.tgz.1
[2026-02-23 13:09:01]  mtime=0
[2026-02-23 13:09:01]  protocol_id=None
[2026-02-23 13:09:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-23 13:09:01]  replicas=None
[2026-02-23 13:09:01]  scope=mc23_13p6TeV
[2026-02-23 13:09:01]  status=None
[2026-02-23 13:09:01]  status_code=0
[2026-02-23 13:09:01]  storage_token=
[2026-02-23 13:09:01]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-7011032722/log.48508763._004889.job.log.tgz.1
[2026-02-23 13:09:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/4c/log.48508763._004889.job.log.tgz.1
[2026-02-23 13:09:01]  workdir=None
[2026-02-23 13:09:01] ]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,360 | INFO     | transferring file log.48508763._004889.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-7011032722/log.48508763._004889.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-23 13:09:01] 2026-02-23 11:07:53,360 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-7011032722/log.48508763._004889.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48508763._004889.job
[2026-02-23 13:09:01] 2026-02-23 11:07:53,368 | INFO     | adding to output.list: log.48508763._004889.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/4c/log.48508763._004889.job.log.tg
[2026-02-23 13:09:01] 2026-02-23 11:07:53,368 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-23 13:09:01] 2026-02-23 11:07:53,368 | INFO     | summary of transferred files:
[2026-02-23 13:09:01] 2026-02-23 11:07:53,368 | INFO     |  -- lfn=log.48508763._004889.job.log.tgz.1, status_code=0, status=transferred
[2026-02-23 13:09:01] 2026-02-23 11:07:53,368 | INFO     | stage-out finished correctly
[2026-02-23 13:09:01] 2026-02-23 11:07:53,396 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-23 13:09:01] 2026-02-23 11:07:53,425 | INFO     | time since job start (5104s) is within the limit (349056.0s)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,638 | INFO     | job 7011032722 has state=finished
[2026-02-23 13:09:01] 2026-02-23 11:07:53,638 | INFO     | preparing for final server update for job 7011032722 in state='finished'
[2026-02-23 13:09:01] 2026-02-23 11:07:53,638 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-7011032722/jobReport.json
[2026-02-23 13:09:01] 2026-02-23 11:07:53,639 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-02-23 13:09:01] 2026-02-23 11:07:53,639 | INFO     | this job has now completed (state=finished)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,639 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,639 | INFO     | log transfer has been attempted: DONE
[2026-02-23 13:09:01] 2026-02-23 11:07:53,639 | INFO     | job 7011032722 has finished - writing final server update
[2026-02-23 13:09:01] 2026-02-23 11:07:53,639 | INFO     | total number of processed events: 400 (read)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,641 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-7011032722/memory_monitor_summary.json (trf name=prmon)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,641 | INFO     | extracted standard info from prmon json
[2026-02-23 13:09:01] 2026-02-23 11:07:53,641 | INFO     | extracted standard memory fields from prmon json
[2026-02-23 13:09:01] 2026-02-23 11:07:53,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-23 13:09:01] 2026-02-23 11:07:53,641 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-23 13:09:01] 2026-02-23 11:07:53,641 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | fitting pss+swap vs Time
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | sum of square deviations: 141539398.0
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | sum of deviations: -14781587709.999998
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | mean x: 1771842408.0
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | mean y: 2537918.8701298703
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | intersect: 185043906839.69598
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | chi2: 0.17116052232839457
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | current memory leak: -104.43 B/s (using 77 data points, chi2=0.17)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | could have reported an average CPU frequency of 3114 MHz (6 samples)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,642 | INFO     | ..............................
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . Timing measurements:
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . get job = 0 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . initial setup = 3 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . payload setup = 2 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . stage-in = 0 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . payload execution = 5087 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . stage-out = 0 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | . log creation = 0 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,643 | INFO     | ..............................
[2026-02-23 13:09:01] 2026-02-23 11:07:53,669 | INFO     | 
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | job summary report
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | --------------------------------------------------
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | PanDA job id: 7011032722
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | task id: 48508763
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | errors: (none)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | pilot state: finished 
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | transexitcode: 0
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | exeerrorcode: 0
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | exeerrordiag: 
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | exitcode: 0
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | exitmsg: OK
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | cpuconsumptiontime: 19617 s
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | nevents: 400
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | neventsw: 0
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | pid: 223660
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | pgrp: 223660
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | corecount: 4
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | event service: False
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | sizes: {0: 2281995, 1: 2282257, 11: 2282285, 5093: 2317914}
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | --------------------------------------------------
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | 
[2026-02-23 13:09:01] 2026-02-23 11:07:53,670 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-02-23 13:09:01] 2026-02-23 11:07:53,679 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,679 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,679 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,679 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | job 7011032722 has completed (purged errors)
[2026-02-23 13:09:01] 2026-02-23 11:07:53,680 | INFO     | overall cleanup function is called
[2026-02-23 13:09:01] 2026-02-23 11:07:54,686 | INFO     | --- collectZombieJob: --- 10, [223660]
[2026-02-23 13:09:01] 2026-02-23 11:07:54,687 | INFO     | zombie collector waiting for pid 223660
[2026-02-23 13:09:01] 2026-02-23 11:07:54,687 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-23 13:09:01] 2026-02-23 11:07:54,687 | INFO     | collected zombie processes
[2026-02-23 13:09:01] 2026-02-23 11:07:54,687 | INFO     | will attempt to kill all subprocesses of pid=223660
[2026-02-23 13:09:01] 2026-02-23 11:07:54,776 | INFO     | process IDs to be killed: [223660] (in reverse order)
[2026-02-23 13:09:01] 2026-02-23 11:07:54,804 | WARNING  | found no corresponding commands to process id(s)
[2026-02-23 13:09:01] 2026-02-23 11:07:54,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-23 13:09:01] 2026-02-23 11:07:54,807 | INFO     | did not find any defunct processes belonging to 223660
[2026-02-23 13:09:01] 2026-02-23 11:07:54,809 | INFO     | did not find any defunct processes belonging to 223660
[2026-02-23 13:09:01] 2026-02-23 11:07:54,809 | INFO     | ready for new job
[2026-02-23 13:09:01] 2026-02-23 11:07:54,810 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-23 13:09:01] 2026-02-23 11:07:54,810 | INFO     | **************************************
[2026-02-23 13:09:01] 2026-02-23 11:07:54,810 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-23 13:09:01] 2026-02-23 11:07:54,810 | INFO     | **************************************
[2026-02-23 13:09:01] 2026-02-23 11:07:54,810 | INFO     | 
[2026-02-23 13:09:01] 2026-02-23 11:07:54,811 | INFO     | architecture information:
[2026-02-23 13:09:01] 2026-02-23 11:07:54,811 | INFO     | executing command: cat /etc/os-release
[2026-02-23 13:09:01] 2026-02-23 11:07:54,817 | INFO     | cat /etc/os-release:
[2026-02-23 13:09:01] NAME="CentOS Linux"
[2026-02-23 13:09:01] VERSION="7 (Core)"
[2026-02-23 13:09:01] ID="centos"
[2026-02-23 13:09:01] ID_LIKE="rhel fedora"
[2026-02-23 13:09:01] VERSION_ID="7"
[2026-02-23 13:09:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-23 13:09:01] ANSI_COLOR="0;31"
[2026-02-23 13:09:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-23 13:09:01] HOME_URL="https://www.centos.org/"
[2026-02-23 13:09:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-23 13:09:01] 
[2026-02-23 13:09:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-23 13:09:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-23 13:09:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-23 13:09:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-23 13:09:01] 
[2026-02-23 13:09:01] 2026-02-23 11:07:54,817 | INFO     | **************************************
[2026-02-23 13:09:01] 2026-02-23 11:07:55,320 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-02-23 13:09:01] 2026-02-23 11:07:55,325 | INFO     | sufficient remaining disk space (68413292544 B)
[2026-02-23 13:09:01] 2026-02-23 11:07:55,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-23 13:09:01] 2026-02-23 11:07:55,325 | INFO     | current server update state: UPDATING_FINAL
[2026-02-23 13:09:01] 2026-02-23 11:07:55,325 | INFO     | update_server=False
[2026-02-23 13:09:01] 2026-02-23 11:07:55,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-23 13:09:01] 2026-02-23 11:07:55,325 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-23 13:09:01] 2026-02-23 11:07:55,326 | INFO     | found 0 job(s) in 20 queues
[2026-02-23 13:09:01] 2026-02-23 11:07:55,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-23 13:09:01] 2026-02-23 11:07:55,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-23 13:09:01] 2026-02-23 11:07:55,326 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-23 13:09:01] 2026-02-23 11:07:55,326 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-23 13:09:01] 2026-02-23 11:07:55,731 | INFO     | all payload control threads have been joined
[2026-02-23 13:09:01] 2026-02-23 11:07:55,754 | INFO     | job.realtimelogging is not enabled
[2026-02-23 13:09:01] 2026-02-23 11:07:55,870 | INFO     | all data control threads have been joined
[2026-02-23 13:09:01] 2026-02-23 11:07:56,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-23 13:09:01] 2026-02-23 11:07:56,258 | INFO     | aborting loop
[2026-02-23 13:09:01] 2026-02-23 11:07:56,328 | INFO     | [job] queue monitor thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:56,330 | INFO     | [job] retrieve thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:56,401 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-23 13:09:01] 2026-02-23 11:07:56,614 | INFO     | [payload] failed_post thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:56,736 | INFO     | [payload] control thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:56,759 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:56,875 | INFO     | [data] control thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:56,986 | INFO     | all job control threads have been joined
[2026-02-23 13:09:01] 2026-02-23 11:07:57,073 | INFO     | [payload] execute_payloads thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:57,101 | INFO     | [payload] validate_pre thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:57,169 | INFO     | [job] validate thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:57,223 | INFO     | [job] create_data_payload thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:57,263 | INFO     | [job] job monitor thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:57,298 | INFO     | [payload] validate_post thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:57,447 | INFO     | [data] copytool_in thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:57,990 | INFO     | [job] control thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:58,406 | INFO     | [data] copytool_out thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:07:59,331 | INFO     | [data] queue_monitor thread has finished
[2026-02-23 13:09:01] 2026-02-23 11:08:55,144 | INFO     | [monitor] cgroup control has ended
[2026-02-23 13:09:01] 2026-02-23 11:08:56,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642991478592)>', '<ExcThread(monitor, started 139642053580544)>']
[2026-02-23 13:09:01] 2026-02-23 11:08:56,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-23 13:09:01] 2026-02-23 11:08:56,607 | INFO     | [monitor] control thread has ended
[2026-02-23 13:09:01] 2026-02-23 11:09:01,573 | INFO     | all workflow threads have been joined
[2026-02-23 13:09:01] 2026-02-23 11:09:01,573 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-23 13:09:01] 2026-02-23 11:09:01,573 | INFO     | traces error code: 0
[2026-02-23 13:09:01] 2026-02-23 11:09:01,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-23 13:09:01] 2026-02-23 11:09:01,624 [wrapper] ==== pilot stdout END ====
[2026-02-23 13:09:01] 2026-02-23 11:09:01,625 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-23 13:09:01] 2026-02-23 11:09:01,627 [wrapper] pilotpid: 218663
[2026-02-23 13:09:01] 2026-02-23 11:09:01,628 [wrapper] Pilot exit status: 0
[2026-02-23 13:09:01] 2026-02-23 11:09:01,633 [wrapper] pandaids: 7011032722
[2026-02-23 13:09:01] 2026-02-23 11:09:01,654 [wrapper] cleanup supervisor_pilot  287027 218664
[2026-02-23 13:09:01] 2026-02-23 11:09:01,656 [wrapper] Test setup, not cleaning
[2026-02-23 13:09:01] 2026-02-23 11:09:01,657 [wrapper] apfmon messages muted
[2026-02-23 13:09:01] 2026-02-23 11:09:01,659 [wrapper] ==== wrapper stdout END ====
[2026-02-23 13:09:01] 2026-02-23 11:09:01,660 [wrapper] ==== wrapper stderr END ====
[2026-02-23 13:09:01]  *** Error codes and diagnostics ***
[2026-02-23 13:09:01]     "exeErrorCode": 0,
[2026-02-23 13:09:01]     "exeErrorDiag": "",
[2026-02-23 13:09:01]     "pilotErrorCode": 0,
[2026-02-23 13:09:01]     "pilotErrorDiag": "",
[2026-02-23 13:09:01]  *** Listing of results directory ***
[2026-02-23 13:09:01] total 949744
[2026-02-23 13:09:01] -rw-r--r-- 1 ek ek    584627 Feb 15 07:05 pilot3.tar.gz
[2026-02-23 13:09:01] -rwx------ 1 ek ek     36322 Feb 15 07:08 runpilot2-wrapper.sh
[2026-02-23 13:09:01] -rw-r--r-- 1 ek ek      5111 Feb 15 07:10 queuedata.json
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek       100 Feb 23 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-23 13:09:01] -rwxr-xr-x 1 ek ek      7986 Feb 23 11:42 run_atlas
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek       105 Feb 23 11:42 job.xml
[2026-02-23 13:09:01] -rw-r--r-- 2 ek ek 684466280 Feb 23 11:42 EVNT.48508760._000095.pool.root.1
[2026-02-23 13:09:01] -rw-r--r-- 2 ek ek    597951 Feb 23 11:42 input.tar.gz
[2026-02-23 13:09:01] -rw-r--r-- 2 ek ek     15845 Feb 23 11:42 start_atlas.sh
[2026-02-23 13:09:01] drwxrwx--x 2 ek ek      4096 Feb 23 11:42 shared
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek         0 Feb 23 11:42 boinc_setup_complete
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek      9842 Feb 23 11:42 init_data.xml
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek         0 Feb 23 11:42 boinc_lockfile
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek      2550 Feb 23 11:42 pandaJob.out
[2026-02-23 13:09:01] -rw------- 1 ek ek        50 Feb 23 11:42 setup.sh.local
[2026-02-23 13:09:01] -rw------- 1 ek ek    996181 Feb 23 11:42 agis_schedconf.cvmfs.json
[2026-02-23 13:09:01] -rw------- 1 ek ek   1513015 Feb 23 11:42 agis_ddmendpoints.agis.ALL.json
[2026-02-23 13:09:01] -rw------- 1 ek ek       433 Feb 23 11:42 workernode_map.json
[2026-02-23 13:09:01] drwx------ 5 ek ek      4096 Feb 23 11:42 pilot3
[2026-02-23 13:09:01] -rw------- 1 ek ek        95 Feb 23 13:07 pilot_heartbeat.json
[2026-02-23 13:09:01] -rw------- 1 ek ek 282039227 Feb 23 13:07 HITS.48508763._004889.pool.root.1
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek       530 Feb 23 13:07 boinc_task_state.xml
[2026-02-23 13:09:01] -rw------- 1 ek ek      1030 Feb 23 13:07 memory_monitor_summary.json
[2026-02-23 13:09:01] -rw------- 1 ek ek    300273 Feb 23 13:07 log.48508763._004889.job.log.tgz.1
[2026-02-23 13:09:01] -rw------- 1 ek ek      6337 Feb 23 13:07 heartbeat.json
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek      8192 Feb 23 13:08 boinc_mmap_file
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek        27 Feb 23 13:08 wrapper_checkpoint.txt
[2026-02-23 13:09:01] -rw------- 1 ek ek      4620 Feb 23 13:09 pilotlog.txt
[2026-02-23 13:09:01] -rw------- 1 ek ek    742330 Feb 23 13:09 log.48508763._004889.job.log.1
[2026-02-23 13:09:01] -rw------- 1 ek ek       357 Feb 23 13:09 output.list
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek       620 Feb 23 13:09 runtime_log
[2026-02-23 13:09:01] -rw------- 1 ek ek   1064960 Feb 23 13:09 result.tar.gz
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek      9501 Feb 23 13:09 runtime_log.err
[2026-02-23 13:09:01] -rw------- 1 ek ek       667 Feb 23 13:09 8WUNDm2XjB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmmBoKDmoqogRo.diag
[2026-02-23 13:09:01] -rw-rw-r-- 1 ek ek     20668 Feb 23 13:09 stderr.txt
[2026-02-23 13:09:01] HITS file was successfully produced:
[2026-02-23 13:09:01] -rw------- 1 ek ek 282039227 Feb 23 13:07 shared/HITS.pool.root.1
[2026-02-23 13:09:01]  *** Contents of shared directory: ***
[2026-02-23 13:09:01] total 945508
[2026-02-23 13:09:01] -rw-r--r-- 2 ek ek 684466280 Feb 23 11:42 ATLAS.root_0
[2026-02-23 13:09:01] -rw-r--r-- 2 ek ek    597951 Feb 23 11:42 input.tar.gz
[2026-02-23 13:09:01] -rw-r--r-- 2 ek ek     15845 Feb 23 11:42 start_atlas.sh
[2026-02-23 13:09:01] -rw------- 1 ek ek 282039227 Feb 23 13:07 HITS.pool.root.1
[2026-02-23 13:09:01] -rw------- 1 ek ek   1064960 Feb 23 13:09 result.tar.gz
13:09:02 (214710): run_atlas exited; CPU time 19667.895581
13:09:02 (214710): called boinc_finish(0)

</stderr_txt>
]]>

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