Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:23:43 (3928): wrapper (7.7.26015): starting
17:23:43 (3928): wrapper: running run_atlas (--nthreads 3)
[2026-02-22 17:23:43] Arguments: --nthreads 3
[2026-02-22 17:23:43] Threads: 3
[2026-02-22 17:23:43] Checking for CVMFS
[2026-02-22 17:23:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-22 17:23:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-22 17:23:46] Running cvmfs_config stat atlas.cern.ch
[2026-02-22 17:23:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-22 17:23:46] 2.9.2.0 4124 0 29124 156528 3 1 29129148 36864000 0 130560 0 0 0.000 1336 8048 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-22 17:23:46] CVMFS is ok
[2026-02-22 17:23:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-22 17:23:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-22 17:23:46] Further information can be found at the LHC@home message board.
[2026-02-22 17:23:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-22 17:23:46] Checking for apptainer binary...
[2026-02-22 17:23:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-22 17:23:46] Running /usr/bin/apptainer --version
[2026-02-22 17:23:46] apptainer version 1.4.1-1.1
[2026-02-22 17:23:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-22 17:23:46] magicA161a
[2026-02-22 17:23:46] apptainer works
[2026-02-22 17:23:46] Set ATHENA_PROC_NUMBER=3
[2026-02-22 17:23:46] Set ATHENA_CORE_NUMBER=3
[2026-02-22 17:23:46] Starting ATLAS job with PandaID=7026263442
[2026-02-22 17:23:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-22 19:15:12]  *** The last 200 lines of the pilot log: ***
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | job 7026263442 has completed (purged errors)
[2026-02-22 19:15:12] 2026-02-22 18:14:53,415 | INFO     | overall cleanup function is called
[2026-02-22 19:15:12] 2026-02-22 18:14:54,422 | INFO     | --- collectZombieJob: --- 10, [12658]
[2026-02-22 19:15:12] 2026-02-22 18:14:54,422 | INFO     | zombie collector waiting for pid 12658
[2026-02-22 19:15:12] 2026-02-22 18:14:54,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-22 19:15:12] 2026-02-22 18:14:54,422 | INFO     | collected zombie processes
[2026-02-22 19:15:12] 2026-02-22 18:14:54,422 | INFO     | will attempt to kill all subprocesses of pid=12658
[2026-02-22 19:15:12] 2026-02-22 18:14:54,462 | INFO     | process IDs to be killed: [12658] (in reverse order)
[2026-02-22 19:15:12] 2026-02-22 18:14:54,487 | WARNING  | found no corresponding commands to process id(s)
[2026-02-22 19:15:12] 2026-02-22 18:14:54,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-22 19:15:12] 2026-02-22 18:14:54,488 | INFO     | did not find any defunct processes belonging to 12658
[2026-02-22 19:15:12] 2026-02-22 18:14:54,489 | INFO     | did not find any defunct processes belonging to 12658
[2026-02-22 19:15:12] 2026-02-22 18:14:54,489 | INFO     | ready for new job
[2026-02-22 19:15:12] 2026-02-22 18:14:54,489 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-22 19:15:12] 2026-02-22 18:14:54,490 | INFO     | **************************************
[2026-02-22 19:15:12] 2026-02-22 18:14:54,490 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-22 19:15:12] 2026-02-22 18:14:54,490 | INFO     | **************************************
[2026-02-22 19:15:12] 2026-02-22 18:14:54,490 | INFO     | 
[2026-02-22 19:15:12] 2026-02-22 18:14:54,491 | INFO     | architecture information:
[2026-02-22 19:15:12] 2026-02-22 18:14:54,491 | INFO     | executing command: cat /etc/os-release
[2026-02-22 19:15:12] 2026-02-22 18:14:54,500 | INFO     | cat /etc/os-release:
[2026-02-22 19:15:12] NAME="CentOS Linux"
[2026-02-22 19:15:12] VERSION="7 (Core)"
[2026-02-22 19:15:12] ID="centos"
[2026-02-22 19:15:12] ID_LIKE="rhel fedora"
[2026-02-22 19:15:12] VERSION_ID="7"
[2026-02-22 19:15:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-22 19:15:12] ANSI_COLOR="0;31"
[2026-02-22 19:15:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-22 19:15:12] HOME_URL="https://www.centos.org/"
[2026-02-22 19:15:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-22 19:15:12] 
[2026-02-22 19:15:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-22 19:15:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-22 19:15:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-22 19:15:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-22 19:15:12] 
[2026-02-22 19:15:12] 2026-02-22 18:14:54,500 | INFO     | **************************************
[2026-02-22 19:15:12] 2026-02-22 18:14:55,003 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-22 19:15:12] 2026-02-22 18:14:55,017 | INFO     | sufficient remaining disk space (377175932928 B)
[2026-02-22 19:15:12] 2026-02-22 18:14:55,017 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-22 19:15:12] 2026-02-22 18:14:55,017 | INFO     | current server update state: UPDATING_FINAL
[2026-02-22 19:15:12] 2026-02-22 18:14:55,017 | INFO     | update_server=False
[2026-02-22 19:15:12] 2026-02-22 18:14:55,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-22 19:15:12] 2026-02-22 18:14:55,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-22 19:15:12] 2026-02-22 18:14:55,018 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-22 19:15:12] 2026-02-22 18:14:55,018 | INFO     | found 0 job(s) in 20 queues
[2026-02-22 19:15:12] 2026-02-22 18:14:55,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-22 19:15:12] 2026-02-22 18:14:55,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-22 19:15:12] 2026-02-22 18:14:55,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-22 19:15:12] 2026-02-22 18:14:55,349 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-22 19:15:12] 2026-02-22 18:14:55,350 | INFO     | aborting loop
[2026-02-22 19:15:12] 2026-02-22 18:14:55,574 | INFO     | all data control threads have been joined
[2026-02-22 19:15:12] 2026-02-22 18:14:56,023 | INFO     | [job] retrieve thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:56,023 | INFO     | [job] queue monitor thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:56,066 | INFO     | [payload] validate_pre thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:56,191 | INFO     | [data] copytool_in thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:56,355 | INFO     | [job] job monitor thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:56,463 | INFO     | all payload control threads have been joined
[2026-02-22 19:15:12] 2026-02-22 18:14:56,486 | INFO     | all job control threads have been joined
[2026-02-22 19:15:12] 2026-02-22 18:14:56,552 | INFO     | [payload] execute_payloads thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:56,580 | INFO     | [data] control thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:56,690 | INFO     | [payload] failed_post thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,023 | INFO     | [data] copytool_out thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,104 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,200 | INFO     | [payload] validate_post thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,463 | INFO     | [job] validate thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,469 | INFO     | [payload] control thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,491 | INFO     | [job] control thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,506 | INFO     | [job] create_data_payload thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:14:57,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-22 19:15:12] 2026-02-22 18:15:01,864 | INFO     | [data] queue_monitor thread has finished
[2026-02-22 19:15:12] 2026-02-22 18:15:06,961 | INFO     | [monitor] cgroup control has ended
[2026-02-22 19:15:12] 2026-02-22 18:15:07,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139922665051968)>', '<ExcThread(monitor, started 139922006583040)>']
[2026-02-22 19:15:12] 2026-02-22 18:15:08,080 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-22 19:15:12] 2026-02-22 18:15:08,081 | INFO     | [monitor] control thread has ended
[2026-02-22 19:15:12] 2026-02-22 18:15:12,817 | INFO     | all workflow threads have been joined
[2026-02-22 19:15:12] 2026-02-22 18:15:12,818 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-22 19:15:12] 2026-02-22 18:15:12,818 | INFO     | traces error code: 0
[2026-02-22 19:15:12] 2026-02-22 18:15:12,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-22 19:15:12] 2026-02-22 18:15:12,866 [wrapper] ==== pilot stdout END ====
[2026-02-22 19:15:12] 2026-02-22 18:15:12,869 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-22 19:15:12] 2026-02-22 18:15:12,871 [wrapper] pilotpid: 8210
[2026-02-22 19:15:12] 2026-02-22 18:15:12,874 [wrapper] Pilot exit status: 0
[2026-02-22 19:15:12] 2026-02-22 18:15:12,882 [wrapper] pandaids: 7026263442
[2026-02-22 19:15:12] 2026-02-22 18:15:12,899 [wrapper] cleanup supervisor_pilot   18801 8211
[2026-02-22 19:15:12] 2026-02-22 18:15:12,901 [wrapper] Test setup, not cleaning
[2026-02-22 19:15:12] 2026-02-22 18:15:12,904 [wrapper] apfmon messages muted
[2026-02-22 19:15:12] 2026-02-22 18:15:12,907 [wrapper] ==== wrapper stdout END ====
[2026-02-22 19:15:12] 2026-02-22 18:15:12,909 [wrapper] ==== wrapper stderr END ====
[2026-02-22 19:15:12]  *** Error codes and diagnostics ***
[2026-02-22 19:15:12]     "exeErrorCode": 0,
[2026-02-22 19:15:12]     "exeErrorDiag": "",
[2026-02-22 19:15:12]     "pilotErrorCode": 0,
[2026-02-22 19:15:12]     "pilotErrorDiag": "",
[2026-02-22 19:15:12]  *** Listing of results directory ***
[2026-02-22 19:15:12] total 460912
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc    584627 Feb 22 16:53 pilot3.tar.gz
[2026-02-22 19:15:12] -rwx------ 1 boinc boinc     36322 Feb 22 17:23 runpilot2-wrapper.sh
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc      5111 Feb 22 17:23 queuedata.json
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc       100 Feb 22 17:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-22 19:15:12] -rwxr-xr-x 1 boinc boinc      7986 Feb 22 17:23 run_atlas
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc       105 Feb 22 17:23 job.xml
[2026-02-22 19:15:12] -rw-r--r-- 2 boinc boinc 280726550 Feb 22 17:23 EVNT.48753940._000010.pool.root.1
[2026-02-22 19:15:12] -rw-r--r-- 2 boinc boinc    597935 Feb 22 17:23 input.tar.gz
[2026-02-22 19:15:12] -rw-r--r-- 2 boinc boinc     15845 Feb 22 17:23 start_atlas.sh
[2026-02-22 19:15:12] drwxrwx--x 2 boinc boinc      4096 Feb 22 17:23 shared
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc         0 Feb 22 17:23 boinc_setup_complete
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc      6449 Feb 22 17:23 init_data.xml
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc         0 Feb 22 17:23 boinc_lockfile
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc      2546 Feb 22 17:23 pandaJob.out
[2026-02-22 19:15:12] -rw------- 1 boinc boinc    998148 Feb 22 17:23 agis_schedconf.cvmfs.json
[2026-02-22 19:15:12] -rw------- 1 boinc boinc   1513015 Feb 22 17:23 agis_ddmendpoints.agis.ALL.json
[2026-02-22 19:15:12] -rw------- 1 boinc boinc       426 Feb 22 17:23 workernode_map.json
[2026-02-22 19:15:12] drwx------ 5 boinc boinc      4096 Feb 22 17:23 pilot3
[2026-02-22 19:15:12] -rw------- 1 boinc boinc        95 Feb 22 19:14 pilot_heartbeat.json
[2026-02-22 19:15:12] -rw------- 1 boinc boinc 184846008 Feb 22 19:14 HITS.48753942._000141.pool.root.1
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc       529 Feb 22 19:14 boinc_task_state.xml
[2026-02-22 19:15:12] -rw------- 1 boinc boinc      1012 Feb 22 19:14 memory_monitor_summary.json
[2026-02-22 19:15:12] -rw------- 1 boinc boinc    284473 Feb 22 19:14 log.48753942._000141.job.log.tgz.1
[2026-02-22 19:15:12] -rw------- 1 boinc boinc      6299 Feb 22 19:14 heartbeat.json
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc      8192 Feb 22 19:15 boinc_mmap_file
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc        27 Feb 22 19:15 wrapper_checkpoint.txt
[2026-02-22 19:15:12] -rw------- 1 boinc boinc      4552 Feb 22 19:15 pilotlog.txt
[2026-02-22 19:15:12] -rw------- 1 boinc boinc    957407 Feb 22 19:15 log.48753942._000141.job.log.1
[2026-02-22 19:15:12] -rw------- 1 boinc boinc       357 Feb 22 19:15 output.list
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc       620 Feb 22 19:15 runtime_log
[2026-02-22 19:15:12] -rw------- 1 boinc boinc   1259520 Feb 22 19:15 result.tar.gz
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc      8916 Feb 22 19:15 runtime_log.err
[2026-02-22 19:15:12] -rw------- 1 boinc boinc       661 Feb 22 19:15 W8pLDmjPRE9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKDzKDmr1nFXm.diag
[2026-02-22 19:15:12] -rw-r--r-- 1 boinc boinc     11607 Feb 22 19:15 stderr.txt
[2026-02-22 19:15:12] HITS file was successfully produced:
[2026-02-22 19:15:12] -rw------- 1 boinc boinc 184846008 Feb 22 19:14 shared/HITS.pool.root.1
[2026-02-22 19:15:12]  *** Contents of shared directory: ***
[2026-02-22 19:15:12] total 456504
[2026-02-22 19:15:12] -rw-r--r-- 2 boinc boinc 280726550 Feb 22 17:23 ATLAS.root_0
[2026-02-22 19:15:12] -rw-r--r-- 2 boinc boinc    597935 Feb 22 17:23 input.tar.gz
[2026-02-22 19:15:12] -rw-r--r-- 2 boinc boinc     15845 Feb 22 17:23 start_atlas.sh
[2026-02-22 19:15:12] -rw------- 1 boinc boinc 184846008 Feb 22 19:14 HITS.pool.root.1
[2026-02-22 19:15:12] -rw------- 1 boinc boinc   1259520 Feb 22 19:15 result.tar.gz
19:15:14 (3928): run_atlas exited; CPU time 19108.983341
19:15:14 (3928): called boinc_finish(0)

</stderr_txt>
]]>

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