Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:03:10 (1383114): wrapper (7.7.26015): starting
00:03:10 (1383114): wrapper: running run_atlas (--nthreads 3)
[2026-02-21 00:03:10] Arguments: --nthreads 3
[2026-02-21 00:03:10] Threads: 3
[2026-02-21 00:03:10] Checking for CVMFS
[2026-02-21 00:03:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-21 00:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-21 00:03:11] Running cvmfs_config stat atlas.cern.ch
[2026-02-21 00:03:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-21 00:03:11] 2.9.2.0 1196108 1433 73368 156462 1 50 29081731 36864001 0 130560 0 524691 99.984 51437 14042 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-21 00:03:11] CVMFS is ok
[2026-02-21 00:03:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-21 00:03:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-21 00:03:11] Further information can be found at the LHC@home message board.
[2026-02-21 00:03:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-21 00:03:11] Checking for apptainer binary...
[2026-02-21 00:03:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-21 00:03:11] Running /usr/bin/apptainer --version
[2026-02-21 00:03:11] apptainer version 1.4.1-1.1
[2026-02-21 00:03:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-21 00:03:11] magicA161a
[2026-02-21 00:03:11] apptainer works
[2026-02-21 00:03:11] Set ATHENA_PROC_NUMBER=3
[2026-02-21 00:03:11] Set ATHENA_CORE_NUMBER=3
[2026-02-21 00:03:11] Starting ATLAS job with PandaID=7023086619
[2026-02-21 00:03:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-21 02:01:35]  *** The last 200 lines of the pilot log: ***
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,874 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-21 02:01:35] 2026-02-21 01:00:32,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,875 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-21 02:01:35] 2026-02-21 01:00:32,875 | INFO     | job 7023086619 has completed (purged errors)
[2026-02-21 02:01:35] 2026-02-21 01:00:32,875 | INFO     | overall cleanup function is called
[2026-02-21 02:01:35] 2026-02-21 01:00:33,881 | INFO     | --- collectZombieJob: --- 10, [1391574]
[2026-02-21 02:01:35] 2026-02-21 01:00:33,882 | INFO     | zombie collector waiting for pid 1391574
[2026-02-21 02:01:35] 2026-02-21 01:00:33,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-21 02:01:35] 2026-02-21 01:00:33,882 | INFO     | collected zombie processes
[2026-02-21 02:01:35] 2026-02-21 01:00:33,882 | INFO     | will attempt to kill all subprocesses of pid=1391574
[2026-02-21 02:01:35] 2026-02-21 01:00:33,923 | INFO     | process IDs to be killed: [1391574] (in reverse order)
[2026-02-21 02:01:35] 2026-02-21 01:00:33,947 | WARNING  | found no corresponding commands to process id(s)
[2026-02-21 02:01:35] 2026-02-21 01:00:33,948 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-21 02:01:35] 2026-02-21 01:00:33,949 | INFO     | did not find any defunct processes belonging to 1391574
[2026-02-21 02:01:35] 2026-02-21 01:00:33,950 | INFO     | did not find any defunct processes belonging to 1391574
[2026-02-21 02:01:35] 2026-02-21 01:00:33,950 | INFO     | ready for new job
[2026-02-21 02:01:35] 2026-02-21 01:00:33,950 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-21 02:01:35] 2026-02-21 01:00:33,951 | INFO     | **************************************
[2026-02-21 02:01:35] 2026-02-21 01:00:33,951 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-21 02:01:35] 2026-02-21 01:00:33,951 | INFO     | **************************************
[2026-02-21 02:01:35] 2026-02-21 01:00:33,951 | INFO     | 
[2026-02-21 02:01:35] 2026-02-21 01:00:33,951 | INFO     | architecture information:
[2026-02-21 02:01:35] 2026-02-21 01:00:33,951 | INFO     | executing command: cat /etc/os-release
[2026-02-21 02:01:35] 2026-02-21 01:00:33,959 | INFO     | cat /etc/os-release:
[2026-02-21 02:01:35] NAME="CentOS Linux"
[2026-02-21 02:01:35] VERSION="7 (Core)"
[2026-02-21 02:01:35] ID="centos"
[2026-02-21 02:01:35] ID_LIKE="rhel fedora"
[2026-02-21 02:01:35] VERSION_ID="7"
[2026-02-21 02:01:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-21 02:01:35] ANSI_COLOR="0;31"
[2026-02-21 02:01:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-21 02:01:35] HOME_URL="https://www.centos.org/"
[2026-02-21 02:01:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-21 02:01:35] 
[2026-02-21 02:01:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-21 02:01:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-21 02:01:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-21 02:01:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-21 02:01:35] 
[2026-02-21 02:01:35] 2026-02-21 01:00:33,960 | INFO     | **************************************
[2026-02-21 02:01:35] 2026-02-21 01:00:34,463 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-21 02:01:35] 2026-02-21 01:00:34,474 | INFO     | sufficient remaining disk space (376336023552 B)
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | INFO     | current server update state: UPDATING_FINAL
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | INFO     | update_server=False
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | INFO     | found 0 job(s) in 20 queues
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-21 02:01:35] 2026-02-21 01:00:34,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-21 02:01:35] 2026-02-21 01:00:34,674 | INFO     | all data control threads have been joined
[2026-02-21 02:01:35] 2026-02-21 01:00:35,009 | INFO     | all job control threads have been joined
[2026-02-21 02:01:35] 2026-02-21 01:00:35,165 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-21 02:01:35] 2026-02-21 01:00:35,165 | INFO     | aborting loop
[2026-02-21 02:01:35] 2026-02-21 01:00:35,404 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-21 02:01:35] 2026-02-21 01:00:35,480 | INFO     | [job] retrieve thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:35,609 | INFO     | [data] copytool_in thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:35,680 | INFO     | [data] control thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:35,758 | INFO     | all payload control threads have been joined
[2026-02-21 02:01:35] 2026-02-21 01:00:36,015 | INFO     | [job] control thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:36,062 | INFO     | [payload] execute_payloads thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:36,171 | INFO     | [job] job monitor thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:36,289 | INFO     | [payload] validate_post thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:36,764 | INFO     | [payload] control thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:36,817 | INFO     | [job] validate thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:36,946 | INFO     | [payload] validate_pre thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:36,959 | INFO     | [job] create_data_payload thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:37,079 | INFO     | [payload] failed_post thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:37,410 | INFO     | [data] copytool_out thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:37,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-21 02:01:35] 2026-02-21 01:00:38,475 | INFO     | [job] queue monitor thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:38,481 | INFO     | [data] queue_monitor thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:00:45,382 | INFO     | job.realtimelogging is not enabled
[2026-02-21 02:01:35] 2026-02-21 01:00:46,387 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-21 02:01:35] 2026-02-21 01:01:29,294 | INFO     | [monitor] cgroup control has ended
[2026-02-21 02:01:35] 2026-02-21 01:01:30,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139807108568896)>', '<ExcThread(monitor, started 139806327686912)>']
[2026-02-21 02:01:35] 2026-02-21 01:01:30,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-21 02:01:35] 2026-02-21 01:01:30,772 | INFO     | [monitor] control thread has ended
[2026-02-21 02:01:35] 2026-02-21 01:01:35,696 | INFO     | all workflow threads have been joined
[2026-02-21 02:01:35] 2026-02-21 01:01:35,696 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-21 02:01:35] 2026-02-21 01:01:35,697 | INFO     | traces error code: 0
[2026-02-21 02:01:35] 2026-02-21 01:01:35,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-21 02:01:35] 2026-02-21 01:01:35,746 [wrapper] ==== pilot stdout END ====
[2026-02-21 02:01:35] 2026-02-21 01:01:35,748 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-21 02:01:35] 2026-02-21 01:01:35,751 [wrapper] pilotpid: 1387154
[2026-02-21 02:01:35] 2026-02-21 01:01:35,753 [wrapper] Pilot exit status: 0
[2026-02-21 02:01:35] 2026-02-21 01:01:35,760 [wrapper] pandaids: 7023086619
[2026-02-21 02:01:35] 2026-02-21 01:01:35,777 [wrapper] cleanup supervisor_pilot 1397369 1387155
[2026-02-21 02:01:35] 2026-02-21 01:01:35,779 [wrapper] Test setup, not cleaning
[2026-02-21 02:01:35] 2026-02-21 01:01:35,781 [wrapper] apfmon messages muted
[2026-02-21 02:01:35] 2026-02-21 01:01:35,784 [wrapper] ==== wrapper stdout END ====
[2026-02-21 02:01:35] 2026-02-21 01:01:35,786 [wrapper] ==== wrapper stderr END ====
[2026-02-21 02:01:35]  *** Error codes and diagnostics ***
[2026-02-21 02:01:35]     "exeErrorCode": 0,
[2026-02-21 02:01:35]     "exeErrorDiag": "",
[2026-02-21 02:01:35]     "pilotErrorCode": 0,
[2026-02-21 02:01:35]     "pilotErrorDiag": "",
[2026-02-21 02:01:35]  *** Listing of results directory ***
[2026-02-21 02:01:35] total 941648
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc    584627 Feb 20 09:44 pilot3.tar.gz
[2026-02-21 02:01:35] -rwx------ 1 boinc boinc     36322 Feb 20 09:47 runpilot2-wrapper.sh
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc      5111 Feb 20 09:47 queuedata.json
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc       100 Feb 21 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-21 02:01:35] -rwxr-xr-x 1 boinc boinc      7986 Feb 21 00:03 run_atlas
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc       105 Feb 21 00:03 job.xml
[2026-02-21 02:01:35] -rw-r--r-- 2 boinc boinc 679423063 Feb 21 00:03 EVNT.48508760._000844.pool.root.1
[2026-02-21 02:01:35] -rw-r--r-- 2 boinc boinc    597948 Feb 21 00:03 input.tar.gz
[2026-02-21 02:01:35] drwxrwx--x 2 boinc boinc      4096 Feb 21 00:03 shared
[2026-02-21 02:01:35] -rw-r--r-- 2 boinc boinc     15845 Feb 21 00:03 start_atlas.sh
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc         0 Feb 21 00:03 boinc_setup_complete
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc      6448 Feb 21 00:03 init_data.xml
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc         0 Feb 21 00:03 boinc_lockfile
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc      2548 Feb 21 00:03 pandaJob.out
[2026-02-21 02:01:35] -rw------- 1 boinc boinc   1001572 Feb 21 00:03 agis_schedconf.cvmfs.json
[2026-02-21 02:01:35] -rw------- 1 boinc boinc   1513015 Feb 21 00:03 agis_ddmendpoints.agis.ALL.json
[2026-02-21 02:01:35] -rw------- 1 boinc boinc       427 Feb 21 00:03 workernode_map.json
[2026-02-21 02:01:35] drwx------ 5 boinc boinc      4096 Feb 21 00:03 pilot3
[2026-02-21 02:01:35] -rw------- 1 boinc boinc        95 Feb 21 01:59 pilot_heartbeat.json
[2026-02-21 02:01:35] -rw------- 1 boinc boinc 278331053 Feb 21 02:00 HITS.48508763._053238.pool.root.1
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc       531 Feb 21 02:00 boinc_task_state.xml
[2026-02-21 02:01:35] -rw------- 1 boinc boinc      1012 Feb 21 02:00 memory_monitor_summary.json
[2026-02-21 02:01:35] -rw------- 1 boinc boinc    272716 Feb 21 02:00 log.48508763._053238.job.log.tgz.1
[2026-02-21 02:01:35] -rw------- 1 boinc boinc      6296 Feb 21 02:00 heartbeat.json
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc      8192 Feb 21 02:01 boinc_mmap_file
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc        27 Feb 21 02:01 wrapper_checkpoint.txt
[2026-02-21 02:01:35] -rw------- 1 boinc boinc      4624 Feb 21 02:01 pilotlog.txt
[2026-02-21 02:01:35] -rw------- 1 boinc boinc   1013856 Feb 21 02:01 log.48508763._053238.job.log.1
[2026-02-21 02:01:35] -rw------- 1 boinc boinc       357 Feb 21 02:01 output.list
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc       620 Feb 21 02:01 runtime_log
[2026-02-21 02:01:35] -rw------- 1 boinc boinc   1300480 Feb 21 02:01 result.tar.gz
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc      8916 Feb 21 02:01 runtime_log.err
[2026-02-21 02:01:35] -rw------- 1 boinc boinc       661 Feb 21 02:01 HX1MDm3LbD9n9Rq4apOajLDm4fhM0noT9bVooX4SDmncxKDmR0Iqzn.diag
[2026-02-21 02:01:35] -rw-r--r-- 1 boinc boinc     12846 Feb 21 02:01 stderr.txt
[2026-02-21 02:01:35] HITS file was successfully produced:
[2026-02-21 02:01:35] -rw------- 1 boinc boinc 278331053 Feb 21 02:00 shared/HITS.pool.root.1
[2026-02-21 02:01:35]  *** Contents of shared directory: ***
[2026-02-21 02:01:35] total 937188
[2026-02-21 02:01:35] -rw-r--r-- 2 boinc boinc 679423063 Feb 21 00:03 ATLAS.root_0
[2026-02-21 02:01:35] -rw-r--r-- 2 boinc boinc    597948 Feb 21 00:03 input.tar.gz
[2026-02-21 02:01:35] -rw-r--r-- 2 boinc boinc     15845 Feb 21 00:03 start_atlas.sh
[2026-02-21 02:01:35] -rw------- 1 boinc boinc 278331053 Feb 21 02:00 HITS.pool.root.1
[2026-02-21 02:01:35] -rw------- 1 boinc boinc   1300480 Feb 21 02:01 result.tar.gz
02:01:37 (1383114): run_atlas exited; CPU time 20326.362892
02:01:37 (1383114): called boinc_finish(0)

</stderr_txt>
]]>

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