Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:24:41 (2061376): wrapper (7.7.26015): starting
18:24:41 (2061376): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 18:24:41] Arguments: --nthreads 4
[2026-02-20 18:24:41] Threads: 4
[2026-02-20 18:24:41] Checking for CVMFS
[2026-02-20 18:24:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 18:24:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 18:24:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 18:24:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 18:24:42] 2.9.2.0 723037 8163 100228 156455 0 49 19953120 36864000 0 130560 0 3798336 99.987 280934 10388 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 18:24:42] CVMFS is ok
[2026-02-20 18:24:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 18:24:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 18:24:42] Further information can be found at the LHC@home message board.
[2026-02-20 18:24:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 18:24:42] Checking for apptainer binary...
[2026-02-20 18:24:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 18:24:42] Running /usr/bin/apptainer --version
[2026-02-20 18:24:42] apptainer version 1.4.1-1.1
[2026-02-20 18:24:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 18:24:42] thA315b
[2026-02-20 18:24:42] apptainer works
[2026-02-20 18:24:42] Set ATHENA_PROC_NUMBER=4
[2026-02-20 18:24:42] Set ATHENA_CORE_NUMBER=4
[2026-02-20 18:24:42] Starting ATLAS job with PandaID=7021230987
[2026-02-20 18:24:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 19:55:27]  *** The last 200 lines of the pilot log: ***
[2026-02-20 19:55:27] 2026-02-20 18:54:54,504 | INFO     | overall cleanup function is called
[2026-02-20 19:55:27] 2026-02-20 18:54:55,510 | INFO     | --- collectZombieJob: --- 10, [2070007]
[2026-02-20 19:55:27] 2026-02-20 18:54:55,511 | INFO     | zombie collector waiting for pid 2070007
[2026-02-20 19:55:27] 2026-02-20 18:54:55,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 19:55:27] 2026-02-20 18:54:55,511 | INFO     | collected zombie processes
[2026-02-20 19:55:27] 2026-02-20 18:54:55,511 | INFO     | will attempt to kill all subprocesses of pid=2070007
[2026-02-20 19:55:27] 2026-02-20 18:54:55,557 | INFO     | process IDs to be killed: [2070007] (in reverse order)
[2026-02-20 19:55:27] 2026-02-20 18:54:55,584 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 19:55:27] 2026-02-20 18:54:55,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 19:55:27] 2026-02-20 18:54:55,585 | INFO     | did not find any defunct processes belonging to 2070007
[2026-02-20 19:55:27] 2026-02-20 18:54:55,586 | INFO     | did not find any defunct processes belonging to 2070007
[2026-02-20 19:55:27] 2026-02-20 18:54:55,587 | INFO     | ready for new job
[2026-02-20 19:55:27] 2026-02-20 18:54:55,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 19:55:27] 2026-02-20 18:54:55,587 | INFO     | **************************************
[2026-02-20 19:55:27] 2026-02-20 18:54:55,587 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 19:55:27] 2026-02-20 18:54:55,587 | INFO     | **************************************
[2026-02-20 19:55:27] 2026-02-20 18:54:55,587 | INFO     | 
[2026-02-20 19:55:27] 2026-02-20 18:54:55,588 | INFO     | architecture information:
[2026-02-20 19:55:27] 2026-02-20 18:54:55,588 | INFO     | executing command: cat /etc/os-release
[2026-02-20 19:55:27] 2026-02-20 18:54:55,598 | INFO     | cat /etc/os-release:
[2026-02-20 19:55:27] NAME="CentOS Linux"
[2026-02-20 19:55:27] VERSION="7 (Core)"
[2026-02-20 19:55:27] ID="centos"
[2026-02-20 19:55:27] ID_LIKE="rhel fedora"
[2026-02-20 19:55:27] VERSION_ID="7"
[2026-02-20 19:55:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 19:55:27] ANSI_COLOR="0;31"
[2026-02-20 19:55:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 19:55:27] HOME_URL="https://www.centos.org/"
[2026-02-20 19:55:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 19:55:27] 
[2026-02-20 19:55:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 19:55:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 19:55:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 19:55:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 19:55:27] 
[2026-02-20 19:55:27] 2026-02-20 18:54:55,598 | INFO     | **************************************
[2026-02-20 19:55:27] 2026-02-20 18:54:56,101 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 19:55:27] 2026-02-20 18:54:56,114 | INFO     | sufficient remaining disk space (339494305792 B)
[2026-02-20 19:55:27] 2026-02-20 18:54:56,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 19:55:27] 2026-02-20 18:54:56,114 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 19:55:27] 2026-02-20 18:54:56,114 | INFO     | update_server=False
[2026-02-20 19:55:27] 2026-02-20 18:54:56,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 19:55:27] 2026-02-20 18:54:56,115 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 19:55:27] 2026-02-20 18:54:56,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 19:55:27] 2026-02-20 18:54:56,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 19:55:27] 2026-02-20 18:54:56,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 19:55:27] 2026-02-20 18:54:56,115 | INFO     | aborting loop
[2026-02-20 19:55:27] 2026-02-20 18:54:57,089 | INFO     | all data control threads have been joined
[2026-02-20 19:55:27] 2026-02-20 18:54:57,095 | INFO     | all job control threads have been joined
[2026-02-20 19:55:27] 2026-02-20 18:54:57,120 | INFO     | [job] retrieve thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:57,120 | INFO     | [job] queue monitor thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:57,121 | INFO     | [job] job monitor thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:57,443 | INFO     | all payload control threads have been joined
[2026-02-20 19:55:27] 2026-02-20 18:54:57,648 | INFO     | [job] validate thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:57,739 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:57,816 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:57,845 | INFO     | [payload] failed_post thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:57,948 | INFO     | [data] copytool_in thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:58,011 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:58,095 | INFO     | [data] control thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:58,100 | INFO     | [job] control thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:58,121 | INFO     | [data] copytool_out thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:58,393 | INFO     | [payload] validate_post thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:58,448 | INFO     | [payload] control thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:54:58,466 | INFO     | job.realtimelogging is not enabled
[2026-02-20 19:55:27] 2026-02-20 18:54:59,472 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:55:00,027 | INFO     | [monitor] cgroup control has ended
[2026-02-20 19:55:27] 2026-02-20 18:55:00,122 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 19:55:27] 2026-02-20 18:55:01,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140389645780800)>', '<ExcThread(monitor, started 140388622907136)>']
[2026-02-20 19:55:27] 2026-02-20 18:55:06,421 | INFO     | all workflow threads have been joined
[2026-02-20 19:55:27] 2026-02-20 18:55:06,422 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 19:55:27] 2026-02-20 18:55:06,422 | INFO     | traces error code: 0
[2026-02-20 19:55:27] 2026-02-20 18:55:06,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 19:55:27] 2026-02-20 18:55:27,096 | INFO     | PID=2065486 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 19:55:27] 2026-02-20 18:55:27,096 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 19:55:27] 2026-02-20 18:55:27,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 19:55:27] 2026-02-20 18:55:27,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 19:55:27] 2026-02-20 18:55:27,096 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 19:55:27] 2026-02-20 18:55:27,096 | INFO     | [monitor] control thread has ended
[2026-02-20 19:55:27] 2026-02-20 18:55:27,147 [wrapper] ==== pilot stdout END ====
[2026-02-20 19:55:27] 2026-02-20 18:55:27,149 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 19:55:27] 2026-02-20 18:55:27,152 [wrapper] pilotpid: 2065486
[2026-02-20 19:55:27] 2026-02-20 18:55:27,154 [wrapper] Pilot exit status: 0
[2026-02-20 19:55:27] 2026-02-20 18:55:27,162 [wrapper] pandaids: 7021230987
[2026-02-20 19:55:27] 2026-02-20 18:55:27,180 [wrapper] cleanup supervisor_pilot 2075292 2065487
[2026-02-20 19:55:27] 2026-02-20 18:55:27,182 [wrapper] Test setup, not cleaning
[2026-02-20 19:55:27] 2026-02-20 18:55:27,185 [wrapper] apfmon messages muted
[2026-02-20 19:55:27] 2026-02-20 18:55:27,187 [wrapper] ==== wrapper stdout END ====
[2026-02-20 19:55:27] 2026-02-20 18:55:27,190 [wrapper] ==== wrapper stderr END ====
[2026-02-20 19:55:27]  *** Error codes and diagnostics ***
[2026-02-20 19:55:27]     "exeErrorCode": 0,
[2026-02-20 19:55:27]     "exeErrorDiag": "",
[2026-02-20 19:55:27]     "pilotErrorCode": 0,
[2026-02-20 19:55:27]     "pilotErrorDiag": "",
[2026-02-20 19:55:27]  *** Listing of results directory ***
[2026-02-20 19:55:27] total 942444
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc    584627 Feb 19 22:53 pilot3.tar.gz
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc      5111 Feb 19 22:55 queuedata.json
[2026-02-20 19:55:27] -rwx------ 1 boinc boinc     36322 Feb 19 22:55 runpilot2-wrapper.sh
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc       100 Feb 20 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 19:55:27] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 18:24 run_atlas
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc       105 Feb 20 18:24 job.xml
[2026-02-20 19:55:27] -rw-r--r-- 2 boinc boinc 677321657 Feb 20 18:24 EVNT.48508760._000467.pool.root.1
[2026-02-20 19:55:27] -rw-r--r-- 2 boinc boinc    597959 Feb 20 18:24 input.tar.gz
[2026-02-20 19:55:27] -rw-r--r-- 2 boinc boinc     15845 Feb 20 18:24 start_atlas.sh
[2026-02-20 19:55:27] drwxrwx--x 2 boinc boinc      4096 Feb 20 18:24 shared
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc         0 Feb 20 18:24 boinc_setup_complete
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc      6443 Feb 20 18:24 init_data.xml
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc         0 Feb 20 18:24 boinc_lockfile
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc      2551 Feb 20 18:24 pandaJob.out
[2026-02-20 19:55:27] -rw------- 1 boinc boinc   1001572 Feb 20 18:24 agis_schedconf.cvmfs.json
[2026-02-20 19:55:27] -rw------- 1 boinc boinc   1513015 Feb 20 18:24 agis_ddmendpoints.agis.ALL.json
[2026-02-20 19:55:27] -rw------- 1 boinc boinc       418 Feb 20 18:24 workernode_map.json
[2026-02-20 19:55:27] drwx------ 5 boinc boinc      4096 Feb 20 18:24 pilot3
[2026-02-20 19:55:27] -rw------- 1 boinc boinc 281728833 Feb 20 19:54 HITS.48508763._051960.pool.root.1
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc       530 Feb 20 19:54 boinc_task_state.xml
[2026-02-20 19:55:27] -rw------- 1 boinc boinc      1013 Feb 20 19:54 memory_monitor_summary.json
[2026-02-20 19:55:27] -rw------- 1 boinc boinc    264049 Feb 20 19:54 log.48508763._051960.job.log.tgz.1
[2026-02-20 19:55:27] -rw------- 1 boinc boinc      6293 Feb 20 19:54 heartbeat.json
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc        27 Feb 20 19:55 wrapper_checkpoint.txt
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc      8192 Feb 20 19:55 boinc_mmap_file
[2026-02-20 19:55:27] -rw------- 1 boinc boinc       747 Feb 20 19:55 pilotlog.txt
[2026-02-20 19:55:27] -rw------- 1 boinc boinc        95 Feb 20 19:55 pilot_heartbeat.json
[2026-02-20 19:55:27] -rw------- 1 boinc boinc    786321 Feb 20 19:55 log.48508763._051960.job.log.1
[2026-02-20 19:55:27] -rw------- 1 boinc boinc       357 Feb 20 19:55 output.list
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc       620 Feb 20 19:55 runtime_log
[2026-02-20 19:55:27] -rw------- 1 boinc boinc   1064960 Feb 20 19:55 result.tar.gz
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc      8901 Feb 20 19:55 runtime_log.err
[2026-02-20 19:55:27] -rw------- 1 boinc boinc       658 Feb 20 19:55 GxKODmvARD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm8iyKDmju6Ojn.diag
[2026-02-20 19:55:27] -rw-r--r-- 1 boinc boinc     10800 Feb 20 19:55 stderr.txt
[2026-02-20 19:55:27] HITS file was successfully produced:
[2026-02-20 19:55:27] -rw------- 1 boinc boinc 281728833 Feb 20 19:54 shared/HITS.pool.root.1
[2026-02-20 19:55:27]  *** Contents of shared directory: ***
[2026-02-20 19:55:27] total 938224
[2026-02-20 19:55:27] -rw-r--r-- 2 boinc boinc 677321657 Feb 20 18:24 ATLAS.root_0
[2026-02-20 19:55:27] -rw-r--r-- 2 boinc boinc    597959 Feb 20 18:24 input.tar.gz
[2026-02-20 19:55:27] -rw-r--r-- 2 boinc boinc     15845 Feb 20 18:24 start_atlas.sh
[2026-02-20 19:55:27] -rw------- 1 boinc boinc 281728833 Feb 20 19:54 HITS.pool.root.1
[2026-02-20 19:55:27] -rw------- 1 boinc boinc   1064960 Feb 20 19:55 result.tar.gz
19:55:29 (2061376): run_atlas exited; CPU time 20592.557471
19:55:29 (2061376): called boinc_finish(0)

</stderr_txt>
]]>

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