Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:46 (1466476): wrapper (7.7.26015): starting
20:54:46 (1466476): wrapper: running run_atlas (--nthreads 2)
[2026-02-20 20:54:46] Arguments: --nthreads 2
[2026-02-20 20:54:46] Threads: 2
[2026-02-20 20:54:46] Checking for CVMFS
[2026-02-20 20:54:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 20:54:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 20:54:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 20:54:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 20:54:47] 2.9.2.0 904139 4448 61420 156458 1 50 24920805 36864000 0 130560 0 953440 99.969 166213 17386 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 20:54:47] CVMFS is ok
[2026-02-20 20:54:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 20:54:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 20:54:47] Further information can be found at the LHC@home message board.
[2026-02-20 20:54:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 20:54:47] Checking for apptainer binary...
[2026-02-20 20:54:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 20:54:47] Running /usr/bin/apptainer --version
[2026-02-20 20:54:47] apptainer version 1.4.1-1.1
[2026-02-20 20:54:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 20:54:47] thA369
[2026-02-20 20:54:47] apptainer works
[2026-02-20 20:54:47] Set ATHENA_PROC_NUMBER=2
[2026-02-20 20:54:47] Set ATHENA_CORE_NUMBER=2
[2026-02-20 20:54:47] Starting ATLAS job with PandaID=7021127885
[2026-02-20 20:54:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-21 00:11:31]  *** The last 200 lines of the pilot log: ***
[2026-02-21 00:11:31] 2026-02-20 23:10:59,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | job 7021127885 has completed (purged errors)
[2026-02-21 00:11:31] 2026-02-20 23:10:59,285 | INFO     | overall cleanup function is called
[2026-02-21 00:11:31] 2026-02-20 23:11:00,291 | INFO     | --- collectZombieJob: --- 10, [1474934]
[2026-02-21 00:11:31] 2026-02-20 23:11:00,291 | INFO     | zombie collector waiting for pid 1474934
[2026-02-21 00:11:31] 2026-02-20 23:11:00,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-21 00:11:31] 2026-02-20 23:11:00,291 | INFO     | collected zombie processes
[2026-02-21 00:11:31] 2026-02-20 23:11:00,292 | INFO     | will attempt to kill all subprocesses of pid=1474934
[2026-02-21 00:11:31] 2026-02-20 23:11:00,351 | INFO     | process IDs to be killed: [1474934] (in reverse order)
[2026-02-21 00:11:31] 2026-02-20 23:11:00,378 | WARNING  | found no corresponding commands to process id(s)
[2026-02-21 00:11:31] 2026-02-20 23:11:00,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-21 00:11:31] 2026-02-20 23:11:00,380 | INFO     | did not find any defunct processes belonging to 1474934
[2026-02-21 00:11:31] 2026-02-20 23:11:00,382 | INFO     | did not find any defunct processes belonging to 1474934
[2026-02-21 00:11:31] 2026-02-20 23:11:00,382 | INFO     | ready for new job
[2026-02-21 00:11:31] 2026-02-20 23:11:00,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-21 00:11:31] 2026-02-20 23:11:00,382 | INFO     | **************************************
[2026-02-21 00:11:31] 2026-02-20 23:11:00,382 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-21 00:11:31] 2026-02-20 23:11:00,382 | INFO     | **************************************
[2026-02-21 00:11:31] 2026-02-20 23:11:00,382 | INFO     | 
[2026-02-21 00:11:31] 2026-02-20 23:11:00,383 | INFO     | architecture information:
[2026-02-21 00:11:31] 2026-02-20 23:11:00,383 | INFO     | executing command: cat /etc/os-release
[2026-02-21 00:11:31] 2026-02-20 23:11:00,391 | INFO     | cat /etc/os-release:
[2026-02-21 00:11:31] NAME="CentOS Linux"
[2026-02-21 00:11:31] VERSION="7 (Core)"
[2026-02-21 00:11:31] ID="centos"
[2026-02-21 00:11:31] ID_LIKE="rhel fedora"
[2026-02-21 00:11:31] VERSION_ID="7"
[2026-02-21 00:11:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-21 00:11:31] ANSI_COLOR="0;31"
[2026-02-21 00:11:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-21 00:11:31] HOME_URL="https://www.centos.org/"
[2026-02-21 00:11:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-21 00:11:31] 
[2026-02-21 00:11:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-21 00:11:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-21 00:11:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-21 00:11:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-21 00:11:31] 
[2026-02-21 00:11:31] 2026-02-20 23:11:00,391 | INFO     | **************************************
[2026-02-21 00:11:31] 2026-02-20 23:11:00,894 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-21 00:11:31] 2026-02-20 23:11:00,902 | INFO     | sufficient remaining disk space (335236038656 B)
[2026-02-21 00:11:31] 2026-02-20 23:11:00,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-21 00:11:31] 2026-02-20 23:11:00,902 | INFO     | current server update state: UPDATING_FINAL
[2026-02-21 00:11:31] 2026-02-20 23:11:00,902 | INFO     | update_server=False
[2026-02-21 00:11:31] 2026-02-20 23:11:00,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-21 00:11:31] 2026-02-20 23:11:00,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-21 00:11:31] 2026-02-20 23:11:00,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-21 00:11:31] 2026-02-20 23:11:01,066 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-21 00:11:31] 2026-02-20 23:11:01,066 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-21 00:11:31] 2026-02-20 23:11:01,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-21 00:11:31] 2026-02-20 23:11:01,067 | INFO     | will abort loop
[2026-02-21 00:11:31] 2026-02-20 23:11:01,099 | INFO     | all payload control threads have been joined
[2026-02-21 00:11:31] 2026-02-20 23:11:01,422 | INFO     | all job control threads have been joined
[2026-02-21 00:11:31] 2026-02-20 23:11:01,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-21 00:11:31] 2026-02-20 23:11:01,546 | INFO     | all data control threads have been joined
[2026-02-21 00:11:31] 2026-02-20 23:11:01,907 | INFO     | [job] retrieve thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:01,908 | INFO     | [job] queue monitor thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,072 | INFO     | [job] job monitor thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,082 | INFO     | [payload] execute_payloads thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,105 | INFO     | [payload] control thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,233 | INFO     | [payload] failed_post thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,428 | INFO     | [job] control thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,551 | INFO     | [data] control thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,786 | INFO     | [payload] validate_post thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,816 | INFO     | [job] validate thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,972 | INFO     | [job] create_data_payload thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:02,996 | INFO     | [payload] validate_pre thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:03,039 | INFO     | [data] copytool_in thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:03,533 | INFO     | [data] copytool_out thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:04,908 | INFO     | [data] queue_monitor thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:11,565 | INFO     | job.realtimelogging is not enabled
[2026-02-21 00:11:31] 2026-02-20 23:11:12,570 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-21 00:11:31] 2026-02-20 23:11:23,591 | INFO     | [monitor] cgroup control has ended
[2026-02-21 00:11:31] 2026-02-20 23:11:24,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490156291904)>', '<ExcThread(monitor, started 140489437206272)>']
[2026-02-21 00:11:31] 2026-02-20 23:11:29,830 | INFO     | all workflow threads have been joined
[2026-02-21 00:11:31] 2026-02-20 23:11:29,831 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-21 00:11:31] 2026-02-20 23:11:29,831 | INFO     | traces error code: 0
[2026-02-21 00:11:31] 2026-02-20 23:11:29,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-21 00:11:31] 2026-02-20 23:11:31,863 | INFO     | PID=1470511 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-21 00:11:31] 2026-02-20 23:11:31,863 | INFO     | found 0 job(s) in 20 queues
[2026-02-21 00:11:31] 2026-02-20 23:11:31,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-21 00:11:31] 2026-02-20 23:11:31,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-21 00:11:31] 2026-02-20 23:11:31,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-21 00:11:31] 2026-02-20 23:11:31,863 | INFO     | [monitor] control thread has ended
[2026-02-21 00:11:31] 2026-02-20 23:11:31,904 [wrapper] ==== pilot stdout END ====
[2026-02-21 00:11:31] 2026-02-20 23:11:31,906 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-21 00:11:31] 2026-02-20 23:11:31,909 [wrapper] pilotpid: 1470511
[2026-02-21 00:11:31] 2026-02-20 23:11:31,911 [wrapper] Pilot exit status: 0
[2026-02-21 00:11:31] 2026-02-20 23:11:31,916 [wrapper] pandaids: 7021127885
[2026-02-21 00:11:31] 2026-02-20 23:11:31,931 [wrapper] cleanup supervisor_pilot 1489134 1470512
[2026-02-21 00:11:31] 2026-02-20 23:11:31,933 [wrapper] Test setup, not cleaning
[2026-02-21 00:11:31] 2026-02-20 23:11:31,936 [wrapper] apfmon messages muted
[2026-02-21 00:11:31] 2026-02-20 23:11:31,938 [wrapper] ==== wrapper stdout END ====
[2026-02-21 00:11:31] 2026-02-20 23:11:31,940 [wrapper] ==== wrapper stderr END ====
[2026-02-21 00:11:31]  *** Error codes and diagnostics ***
[2026-02-21 00:11:31]     "exeErrorCode": 0,
[2026-02-21 00:11:31]     "exeErrorDiag": "",
[2026-02-21 00:11:31]     "pilotErrorCode": 0,
[2026-02-21 00:11:31]     "pilotErrorDiag": "",
[2026-02-21 00:11:31]  *** Listing of results directory ***
[2026-02-21 00:11:31] total 950280
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc    584627 Feb 19 18:01 pilot3.tar.gz
[2026-02-21 00:11:31] -rwx------ 1 boinc boinc     36322 Feb 19 18:06 runpilot2-wrapper.sh
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc      5111 Feb 19 18:10 queuedata.json
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc       100 Feb 20 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-21 00:11:31] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 20:54 run_atlas
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc       105 Feb 20 20:54 job.xml
[2026-02-21 00:11:31] -rw-r--r-- 2 boinc boinc 684250906 Feb 20 20:54 EVNT.48508760._000970.pool.root.1
[2026-02-21 00:11:31] -rw-r--r-- 2 boinc boinc    597955 Feb 20 20:54 input.tar.gz
[2026-02-21 00:11:31] -rw-r--r-- 2 boinc boinc     15845 Feb 20 20:54 start_atlas.sh
[2026-02-21 00:11:31] drwxrwx--x 2 boinc boinc      4096 Feb 20 20:54 shared
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc         0 Feb 20 20:54 boinc_setup_complete
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc      6205 Feb 20 20:54 init_data.xml
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc         0 Feb 20 20:54 boinc_lockfile
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc      2552 Feb 20 20:54 pandaJob.out
[2026-02-21 00:11:31] -rw------- 1 boinc boinc   1001572 Feb 20 20:54 agis_schedconf.cvmfs.json
[2026-02-21 00:11:31] -rw------- 1 boinc boinc       419 Feb 20 20:55 workernode_map.json
[2026-02-21 00:11:31] drwx------ 5 boinc boinc      4096 Feb 20 20:55 pilot3
[2026-02-21 00:11:31] -rw------- 1 boinc boinc 280859952 Feb 21 00:10 HITS.48508763._050280.pool.root.1
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc       531 Feb 21 00:10 boinc_task_state.xml
[2026-02-21 00:11:31] -rw------- 1 boinc boinc      1016 Feb 21 00:10 memory_monitor_summary.json
[2026-02-21 00:11:31] -rw------- 1 boinc boinc   1513015 Feb 21 00:10 agis_ddmendpoints.agis.ALL.json
[2026-02-21 00:11:31] -rw------- 1 boinc boinc    366213 Feb 21 00:10 log.48508763._050280.job.log.tgz.1
[2026-02-21 00:11:31] -rw------- 1 boinc boinc      6301 Feb 21 00:10 heartbeat.json
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc        28 Feb 21 00:11 wrapper_checkpoint.txt
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc      8192 Feb 21 00:11 boinc_mmap_file
[2026-02-21 00:11:31] -rw------- 1 boinc boinc       747 Feb 21 00:11 pilotlog.txt
[2026-02-21 00:11:31] -rw------- 1 boinc boinc        95 Feb 21 00:11 pilot_heartbeat.json
[2026-02-21 00:11:31] -rw------- 1 boinc boinc   1661783 Feb 21 00:11 log.48508763._050280.job.log.1
[2026-02-21 00:11:31] -rw------- 1 boinc boinc       357 Feb 21 00:11 output.list
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc       620 Feb 21 00:11 runtime_log
[2026-02-21 00:11:31] -rw------- 1 boinc boinc   2048000 Feb 21 00:11 result.tar.gz
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc      8897 Feb 21 00:11 runtime_log.err
[2026-02-21 00:11:31] -rw------- 1 boinc boinc       660 Feb 21 00:11 PV5LDm3eMD9n9Rq4apOajLDm4fhM0noT9bVooX4SDme9wKDmhUNA4n.diag
[2026-02-21 00:11:31] -rw-r--r-- 1 boinc boinc     12253 Feb 21 00:11 stderr.txt
[2026-02-21 00:11:31] HITS file was successfully produced:
[2026-02-21 00:11:31] -rw------- 1 boinc boinc 280859952 Feb 21 00:10 shared/HITS.pool.root.1
[2026-02-21 00:11:31]  *** Contents of shared directory: ***
[2026-02-21 00:11:31] total 945104
[2026-02-21 00:11:31] -rw-r--r-- 2 boinc boinc 684250906 Feb 20 20:54 ATLAS.root_0
[2026-02-21 00:11:31] -rw-r--r-- 2 boinc boinc    597955 Feb 20 20:54 input.tar.gz
[2026-02-21 00:11:31] -rw-r--r-- 2 boinc boinc     15845 Feb 20 20:54 start_atlas.sh
[2026-02-21 00:11:31] -rw------- 1 boinc boinc 280859952 Feb 21 00:10 HITS.pool.root.1
[2026-02-21 00:11:31] -rw------- 1 boinc boinc   2048000 Feb 21 00:11 result.tar.gz
00:11:33 (1466476): run_atlas exited; CPU time 23153.493397
00:11:33 (1466476): called boinc_finish(0)

</stderr_txt>
]]>

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