Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:52:08 (2288303): wrapper (7.7.26015): starting
13:52:08 (2288303): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 13:52:08] Arguments: --nthreads 4
[2026-02-20 13:52:08] Threads: 4
[2026-02-20 13:52:08] Checking for CVMFS
[2026-02-20 13:52:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 13:52:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 13:52:09] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 13:52:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 13:52:09] 2.9.2.0 1046581 7953 101236 156448 3 50 27014404 36864001 0 130560 0 3176651 99.984 271703 17442 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 13:52:09] CVMFS is ok
[2026-02-20 13:52:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 13:52:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 13:52:09] Further information can be found at the LHC@home message board.
[2026-02-20 13:52:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 13:52:09] Checking for apptainer binary...
[2026-02-20 13:52:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 13:52:09] Running /usr/bin/apptainer --version
[2026-02-20 13:52:09] apptainer version 1.4.1-1.1
[2026-02-20 13:52:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 13:52:09] thA309
[2026-02-20 13:52:09] apptainer works
[2026-02-20 13:52:09] Set ATHENA_PROC_NUMBER=4
[2026-02-20 13:52:09] Set ATHENA_CORE_NUMBER=4
[2026-02-20 13:52:09] Starting ATLAS job with PandaID=7017964608
[2026-02-20 13:52:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 15:38:36]  *** The last 200 lines of the pilot log: ***
[2026-02-20 15:38:36] 2026-02-20 14:37:53,687 | INFO     | 
[2026-02-20 15:38:36] 2026-02-20 14:37:53,687 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,710 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,711 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 15:38:36] 2026-02-20 14:37:53,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,711 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 15:38:36] 2026-02-20 14:37:53,711 | INFO     | job 7017964608 has completed (purged errors)
[2026-02-20 15:38:36] 2026-02-20 14:37:53,711 | INFO     | overall cleanup function is called
[2026-02-20 15:38:36] 2026-02-20 14:37:54,715 | INFO     | --- collectZombieJob: --- 10, [2296922]
[2026-02-20 15:38:36] 2026-02-20 14:37:54,715 | INFO     | zombie collector waiting for pid 2296922
[2026-02-20 15:38:36] 2026-02-20 14:37:54,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 15:38:36] 2026-02-20 14:37:54,716 | INFO     | collected zombie processes
[2026-02-20 15:38:36] 2026-02-20 14:37:54,716 | INFO     | will attempt to kill all subprocesses of pid=2296922
[2026-02-20 15:38:36] 2026-02-20 14:37:54,766 | INFO     | process IDs to be killed: [2296922] (in reverse order)
[2026-02-20 15:38:36] 2026-02-20 14:37:54,802 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 15:38:36] 2026-02-20 14:37:54,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 15:38:36] 2026-02-20 14:37:54,804 | INFO     | did not find any defunct processes belonging to 2296922
[2026-02-20 15:38:36] 2026-02-20 14:37:54,806 | INFO     | did not find any defunct processes belonging to 2296922
[2026-02-20 15:38:36] 2026-02-20 14:37:54,806 | INFO     | ready for new job
[2026-02-20 15:38:36] 2026-02-20 14:37:54,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 15:38:36] 2026-02-20 14:37:54,807 | INFO     | **************************************
[2026-02-20 15:38:36] 2026-02-20 14:37:54,807 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 15:38:36] 2026-02-20 14:37:54,807 | INFO     | **************************************
[2026-02-20 15:38:36] 2026-02-20 14:37:54,807 | INFO     | 
[2026-02-20 15:38:36] 2026-02-20 14:37:54,807 | INFO     | architecture information:
[2026-02-20 15:38:36] 2026-02-20 14:37:54,807 | INFO     | executing command: cat /etc/os-release
[2026-02-20 15:38:36] 2026-02-20 14:37:54,822 | INFO     | cat /etc/os-release:
[2026-02-20 15:38:36] NAME="CentOS Linux"
[2026-02-20 15:38:36] VERSION="7 (Core)"
[2026-02-20 15:38:36] ID="centos"
[2026-02-20 15:38:36] ID_LIKE="rhel fedora"
[2026-02-20 15:38:36] VERSION_ID="7"
[2026-02-20 15:38:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 15:38:36] ANSI_COLOR="0;31"
[2026-02-20 15:38:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 15:38:36] HOME_URL="https://www.centos.org/"
[2026-02-20 15:38:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 15:38:36] 
[2026-02-20 15:38:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 15:38:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 15:38:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 15:38:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 15:38:36] 
[2026-02-20 15:38:36] 2026-02-20 14:37:54,823 | INFO     | **************************************
[2026-02-20 15:38:36] 2026-02-20 14:37:55,326 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 15:38:36] 2026-02-20 14:37:55,344 | INFO     | sufficient remaining disk space (230568230912 B)
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | INFO     | update_server=False
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 15:38:36] 2026-02-20 14:37:55,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 15:38:36] 2026-02-20 14:37:55,515 | INFO     | all data control threads have been joined
[2026-02-20 15:38:36] 2026-02-20 14:37:55,743 | INFO     | all payload control threads have been joined
[2026-02-20 15:38:36] 2026-02-20 14:37:56,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 15:38:36] 2026-02-20 14:37:56,104 | INFO     | aborting loop
[2026-02-20 15:38:36] 2026-02-20 14:37:56,350 | INFO     | [job] retrieve thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:56,351 | INFO     | [job] queue monitor thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:56,358 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:56,521 | INFO     | [data] control thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:56,554 | INFO     | [payload] validate_post thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:56,595 | INFO     | [data] copytool_in thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:56,719 | INFO     | all job control threads have been joined
[2026-02-20 15:38:36] 2026-02-20 14:37:56,749 | INFO     | [payload] control thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:57,110 | INFO     | [job] job monitor thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:57,202 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:57,351 | INFO     | [data] copytool_out thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:57,595 | INFO     | [payload] failed_post thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:57,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 15:38:36] 2026-02-20 14:37:57,724 | INFO     | [job] control thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:57,776 | INFO     | [job] validate thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:37:57,804 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:38:01,686 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:38:06,336 | INFO     | job.realtimelogging is not enabled
[2026-02-20 15:38:36] 2026-02-20 14:38:07,342 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 15:38:36] 2026-02-20 14:38:30,309 | INFO     | [monitor] cgroup control has ended
[2026-02-20 15:38:36] 2026-02-20 14:38:31,637 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848501606208)>', '<ExcThread(monitor, started 139847851288320)>']
[2026-02-20 15:38:36] 2026-02-20 14:38:32,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 15:38:36] 2026-02-20 14:38:32,542 | INFO     | [monitor] control thread has ended
[2026-02-20 15:38:36] 2026-02-20 14:38:36,662 | INFO     | all workflow threads have been joined
[2026-02-20 15:38:36] 2026-02-20 14:38:36,663 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 15:38:36] 2026-02-20 14:38:36,663 | INFO     | traces error code: 0
[2026-02-20 15:38:36] 2026-02-20 14:38:36,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 15:38:36] 2026-02-20 14:38:36,746 [wrapper] ==== pilot stdout END ====
[2026-02-20 15:38:36] 2026-02-20 14:38:36,750 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 15:38:36] 2026-02-20 14:38:36,754 [wrapper] pilotpid: 2292412
[2026-02-20 15:38:36] 2026-02-20 14:38:36,758 [wrapper] Pilot exit status: 0
[2026-02-20 15:38:36] 2026-02-20 14:38:36,769 [wrapper] pandaids: 7017964608
[2026-02-20 15:38:36] 2026-02-20 14:38:36,793 [wrapper] cleanup supervisor_pilot 2303230 2292413
[2026-02-20 15:38:36] 2026-02-20 14:38:36,797 [wrapper] Test setup, not cleaning
[2026-02-20 15:38:36] 2026-02-20 14:38:36,801 [wrapper] apfmon messages muted
[2026-02-20 15:38:36] 2026-02-20 14:38:36,805 [wrapper] ==== wrapper stdout END ====
[2026-02-20 15:38:36] 2026-02-20 14:38:36,809 [wrapper] ==== wrapper stderr END ====
[2026-02-20 15:38:36]  *** Error codes and diagnostics ***
[2026-02-20 15:38:36]     "exeErrorCode": 0,
[2026-02-20 15:38:36]     "exeErrorDiag": "",
[2026-02-20 15:38:36]     "pilotErrorCode": 0,
[2026-02-20 15:38:36]     "pilotErrorDiag": "",
[2026-02-20 15:38:36]  *** Listing of results directory ***
[2026-02-20 15:38:36] total 939992
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc    584627 Feb 15 21:13 pilot3.tar.gz
[2026-02-20 15:38:36] -rwx------ 1 boinc boinc     36322 Feb 15 21:14 runpilot2-wrapper.sh
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc      5111 Feb 15 21:16 queuedata.json
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc       100 Feb 20 13:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 15:38:36] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 13:52 run_atlas
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc       105 Feb 20 13:52 job.xml
[2026-02-20 15:38:36] -rw-r--r-- 2 boinc boinc 675410800 Feb 20 13:52 EVNT.48431094._000947.pool.root.1
[2026-02-20 15:38:36] -rw-r--r-- 2 boinc boinc    597961 Feb 20 13:52 input.tar.gz
[2026-02-20 15:38:36] drwxrwx--x 2 boinc boinc      4096 Feb 20 13:52 shared
[2026-02-20 15:38:36] -rw-r--r-- 2 boinc boinc     15845 Feb 20 13:52 start_atlas.sh
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc         0 Feb 20 13:52 boinc_setup_complete
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc      6377 Feb 20 13:52 init_data.xml
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc         0 Feb 20 13:52 boinc_lockfile
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc      2555 Feb 20 13:52 pandaJob.out
[2026-02-20 15:38:36] -rw------- 1 boinc boinc   1001572 Feb 20 13:52 agis_schedconf.cvmfs.json
[2026-02-20 15:38:36] -rw------- 1 boinc boinc   1513015 Feb 20 13:52 agis_ddmendpoints.agis.ALL.json
[2026-02-20 15:38:36] -rw------- 1 boinc boinc       427 Feb 20 13:52 workernode_map.json
[2026-02-20 15:38:36] drwx------ 5 boinc boinc      4096 Feb 20 13:52 pilot3
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc       530 Feb 20 15:37 boinc_task_state.xml
[2026-02-20 15:38:36] -rw------- 1 boinc boinc 280830453 Feb 20 15:37 HITS.48431096._057434.pool.root.1
[2026-02-20 15:38:36] -rw------- 1 boinc boinc      1021 Feb 20 15:37 memory_monitor_summary.json
[2026-02-20 15:38:36] -rw------- 1 boinc boinc    277244 Feb 20 15:37 log.48431096._057434.job.log.tgz.1
[2026-02-20 15:38:36] -rw------- 1 boinc boinc      6309 Feb 20 15:37 heartbeat.json
[2026-02-20 15:38:36] -rw------- 1 boinc boinc        95 Feb 20 15:37 pilot_heartbeat.json
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc        27 Feb 20 15:38 wrapper_checkpoint.txt
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc      8192 Feb 20 15:38 boinc_mmap_file
[2026-02-20 15:38:36] -rw------- 1 boinc boinc      4624 Feb 20 15:38 pilotlog.txt
[2026-02-20 15:38:36] -rw------- 1 boinc boinc    915349 Feb 20 15:38 log.48431096._057434.job.log.1
[2026-02-20 15:38:36] -rw------- 1 boinc boinc       357 Feb 20 15:38 output.list
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc       620 Feb 20 15:38 runtime_log
[2026-02-20 15:38:36] -rw------- 1 boinc boinc   1208320 Feb 20 15:38 result.tar.gz
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc      8896 Feb 20 15:38 runtime_log.err
[2026-02-20 15:38:36] -rw------- 1 boinc boinc       657 Feb 20 15:38 3kKMDmSgxB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmhopKDmJZnMim.diag
[2026-02-20 15:38:36] -rw-r--r-- 1 boinc boinc     13016 Feb 20 15:38 stderr.txt
[2026-02-20 15:38:36] HITS file was successfully produced:
[2026-02-20 15:38:36] -rw------- 1 boinc boinc 280830453 Feb 20 15:37 shared/HITS.pool.root.1
[2026-02-20 15:38:36]  *** Contents of shared directory: ***
[2026-02-20 15:38:36] total 935624
[2026-02-20 15:38:36] -rw-r--r-- 2 boinc boinc 675410800 Feb 20 13:52 ATLAS.root_0
[2026-02-20 15:38:36] -rw-r--r-- 2 boinc boinc    597961 Feb 20 13:52 input.tar.gz
[2026-02-20 15:38:36] -rw-r--r-- 2 boinc boinc     15845 Feb 20 13:52 start_atlas.sh
[2026-02-20 15:38:36] -rw------- 1 boinc boinc 280830453 Feb 20 15:37 HITS.pool.root.1
[2026-02-20 15:38:36] -rw------- 1 boinc boinc   1208320 Feb 20 15:38 result.tar.gz
15:38:37 (2288303): run_atlas exited; CPU time 24158.871938
15:38:37 (2288303): called boinc_finish(0)

</stderr_txt>
]]>

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