Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:15:28 (2004539): wrapper (7.7.26015): starting
12:15:28 (2004539): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 12:15:28] Arguments: --nthreads 4
[2026-02-20 12:15:28] Threads: 4
[2026-02-20 12:15:28] Checking for CVMFS
[2026-02-20 12:15:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 12:15:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 12:15:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 12:15:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 12:15:29] 2.9.2.0 723037 7794 100132 156445 0 49 19891352 36864001 0 130560 0 3637972 99.987 267232 10294 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 12:15:29] CVMFS is ok
[2026-02-20 12:15:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 12:15:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 12:15:29] Further information can be found at the LHC@home message board.
[2026-02-20 12:15:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 12:15:29] Checking for apptainer binary...
[2026-02-20 12:15:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 12:15:29] Running /usr/bin/apptainer --version
[2026-02-20 12:15:29] apptainer version 1.4.1-1.1
[2026-02-20 12:15:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 12:15:29] thA315b
[2026-02-20 12:15:29] apptainer works
[2026-02-20 12:15:29] Set ATHENA_PROC_NUMBER=4
[2026-02-20 12:15:29] Set ATHENA_CORE_NUMBER=4
[2026-02-20 12:15:29] Starting ATLAS job with PandaID=7021123447
[2026-02-20 12:15:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 13:49:54]  *** The last 200 lines of the pilot log: ***
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | job 7021123447 has completed (purged errors)
[2026-02-20 13:49:54] 2026-02-20 12:49:15,001 | INFO     | overall cleanup function is called
[2026-02-20 13:49:54] 2026-02-20 12:49:16,007 | INFO     | --- collectZombieJob: --- 10, [2013156]
[2026-02-20 13:49:54] 2026-02-20 12:49:16,007 | INFO     | zombie collector waiting for pid 2013156
[2026-02-20 13:49:54] 2026-02-20 12:49:16,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 13:49:54] 2026-02-20 12:49:16,007 | INFO     | collected zombie processes
[2026-02-20 13:49:54] 2026-02-20 12:49:16,007 | INFO     | will attempt to kill all subprocesses of pid=2013156
[2026-02-20 13:49:54] 2026-02-20 12:49:16,052 | INFO     | process IDs to be killed: [2013156] (in reverse order)
[2026-02-20 13:49:54] 2026-02-20 12:49:16,079 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 13:49:54] 2026-02-20 12:49:16,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 13:49:54] 2026-02-20 12:49:16,080 | INFO     | did not find any defunct processes belonging to 2013156
[2026-02-20 13:49:54] 2026-02-20 12:49:16,082 | INFO     | did not find any defunct processes belonging to 2013156
[2026-02-20 13:49:54] 2026-02-20 12:49:16,082 | INFO     | ready for new job
[2026-02-20 13:49:54] 2026-02-20 12:49:16,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 13:49:54] 2026-02-20 12:49:16,082 | INFO     | **************************************
[2026-02-20 13:49:54] 2026-02-20 12:49:16,082 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 13:49:54] 2026-02-20 12:49:16,083 | INFO     | **************************************
[2026-02-20 13:49:54] 2026-02-20 12:49:16,083 | INFO     | 
[2026-02-20 13:49:54] 2026-02-20 12:49:16,083 | INFO     | architecture information:
[2026-02-20 13:49:54] 2026-02-20 12:49:16,083 | INFO     | executing command: cat /etc/os-release
[2026-02-20 13:49:54] 2026-02-20 12:49:16,093 | INFO     | cat /etc/os-release:
[2026-02-20 13:49:54] NAME="CentOS Linux"
[2026-02-20 13:49:54] VERSION="7 (Core)"
[2026-02-20 13:49:54] ID="centos"
[2026-02-20 13:49:54] ID_LIKE="rhel fedora"
[2026-02-20 13:49:54] VERSION_ID="7"
[2026-02-20 13:49:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 13:49:54] ANSI_COLOR="0;31"
[2026-02-20 13:49:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 13:49:54] HOME_URL="https://www.centos.org/"
[2026-02-20 13:49:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 13:49:54] 
[2026-02-20 13:49:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 13:49:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 13:49:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 13:49:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 13:49:54] 
[2026-02-20 13:49:54] 2026-02-20 12:49:16,093 | INFO     | **************************************
[2026-02-20 13:49:54] 2026-02-20 12:49:16,596 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 13:49:54] 2026-02-20 12:49:16,610 | INFO     | sufficient remaining disk space (336820436992 B)
[2026-02-20 13:49:54] 2026-02-20 12:49:16,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 13:49:54] 2026-02-20 12:49:16,610 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 13:49:54] 2026-02-20 12:49:16,610 | INFO     | update_server=False
[2026-02-20 13:49:54] 2026-02-20 12:49:16,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 13:49:54] 2026-02-20 12:49:16,610 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 13:49:54] 2026-02-20 12:49:16,610 | INFO     | aborting loop
[2026-02-20 13:49:54] 2026-02-20 12:49:16,678 | INFO     | all job control threads have been joined
[2026-02-20 13:49:54] 2026-02-20 12:49:16,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 13:49:54] 2026-02-20 12:49:17,074 | INFO     | all data control threads have been joined
[2026-02-20 13:49:54] 2026-02-20 12:49:17,419 | INFO     | job.realtimelogging is not enabled
[2026-02-20 13:49:54] 2026-02-20 12:49:17,606 | INFO     | all payload control threads have been joined
[2026-02-20 13:49:54] 2026-02-20 12:49:17,616 | INFO     | [job] retrieve thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:17,616 | INFO     | [job] job monitor thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:17,647 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:17,684 | INFO     | [job] control thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:17,783 | INFO     | [data] copytool_in thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:18,022 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:18,080 | INFO     | [data] control thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:18,425 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:18,451 | INFO     | [payload] validate_post thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:18,612 | INFO     | [payload] control thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:18,901 | INFO     | [data] copytool_out thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:19,013 | INFO     | [job] validate thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:19,045 | INFO     | [payload] failed_post thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:19,062 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:19,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 13:49:54] 2026-02-20 12:49:19,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 13:49:54] 2026-02-20 12:49:20,571 | INFO     | [job] queue monitor thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:23,835 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 13:49:54] 2026-02-20 12:49:46,365 | INFO     | PID=2008665 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 13:49:54] 2026-02-20 12:49:46,365 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 13:49:54] 2026-02-20 12:49:46,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 13:49:54] 2026-02-20 12:49:46,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 13:49:54] 2026-02-20 12:49:46,910 | INFO     | [monitor] cgroup control has ended
[2026-02-20 13:49:54] 2026-02-20 12:49:48,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139866631059264)>', '<ExcThread(monitor, started 139865828071168)>']
[2026-02-20 13:49:54] 2026-02-20 12:49:49,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 13:49:54] 2026-02-20 12:49:49,381 | INFO     | [monitor] control thread has ended
[2026-02-20 13:49:54] 2026-02-20 12:49:53,895 | INFO     | all workflow threads have been joined
[2026-02-20 13:49:54] 2026-02-20 12:49:53,896 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 13:49:54] 2026-02-20 12:49:53,896 | INFO     | traces error code: 0
[2026-02-20 13:49:54] 2026-02-20 12:49:53,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 13:49:54] 2026-02-20 12:49:53,950 [wrapper] ==== pilot stdout END ====
[2026-02-20 13:49:54] 2026-02-20 12:49:53,953 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 13:49:54] 2026-02-20 12:49:53,955 [wrapper] pilotpid: 2008665
[2026-02-20 13:49:54] 2026-02-20 12:49:53,958 [wrapper] Pilot exit status: 0
[2026-02-20 13:49:54] 2026-02-20 12:49:53,966 [wrapper] pandaids: 7021123447
[2026-02-20 13:49:54] 2026-02-20 12:49:53,984 [wrapper] cleanup supervisor_pilot 2018400 2008666
[2026-02-20 13:49:54] 2026-02-20 12:49:53,987 [wrapper] Test setup, not cleaning
[2026-02-20 13:49:54] 2026-02-20 12:49:53,989 [wrapper] apfmon messages muted
[2026-02-20 13:49:54] 2026-02-20 12:49:53,992 [wrapper] ==== wrapper stdout END ====
[2026-02-20 13:49:54] 2026-02-20 12:49:53,994 [wrapper] ==== wrapper stderr END ====
[2026-02-20 13:49:54]  *** Error codes and diagnostics ***
[2026-02-20 13:49:54]     "exeErrorCode": 0,
[2026-02-20 13:49:54]     "exeErrorDiag": "",
[2026-02-20 13:49:54]     "pilotErrorCode": 0,
[2026-02-20 13:49:54]     "pilotErrorDiag": "",
[2026-02-20 13:49:54]  *** Listing of results directory ***
[2026-02-20 13:49:54] total 943740
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc    584627 Feb 19 14:45 pilot3.tar.gz
[2026-02-20 13:49:54] -rwx------ 1 boinc boinc     36322 Feb 19 14:49 runpilot2-wrapper.sh
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc      5111 Feb 19 14:55 queuedata.json
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc       100 Feb 20 12:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 13:49:54] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 12:15 run_atlas
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc       105 Feb 20 12:15 job.xml
[2026-02-20 13:49:54] -rw-r--r-- 2 boinc boinc 678643009 Feb 20 12:15 EVNT.48508760._000930.pool.root.1
[2026-02-20 13:49:54] -rw-r--r-- 2 boinc boinc    597963 Feb 20 12:15 input.tar.gz
[2026-02-20 13:49:54] -rw-r--r-- 2 boinc boinc     15845 Feb 20 12:15 start_atlas.sh
[2026-02-20 13:49:54] drwxrwx--x 2 boinc boinc      4096 Feb 20 12:15 shared
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc         0 Feb 20 12:15 boinc_setup_complete
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc      6443 Feb 20 12:15 init_data.xml
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc         0 Feb 20 12:15 boinc_lockfile
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc      2551 Feb 20 12:15 pandaJob.out
[2026-02-20 13:49:54] -rw------- 1 boinc boinc   1001559 Feb 20 12:15 agis_schedconf.cvmfs.json
[2026-02-20 13:49:54] -rw------- 1 boinc boinc   1513015 Feb 20 12:15 agis_ddmendpoints.agis.ALL.json
[2026-02-20 13:49:54] -rw------- 1 boinc boinc       416 Feb 20 12:15 workernode_map.json
[2026-02-20 13:49:54] drwx------ 5 boinc boinc      4096 Feb 20 12:15 pilot3
[2026-02-20 13:49:54] -rw------- 1 boinc boinc 281605692 Feb 20 13:48 HITS.48508763._048254.pool.root.1
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc       530 Feb 20 13:48 boinc_task_state.xml
[2026-02-20 13:49:54] -rw------- 1 boinc boinc      1011 Feb 20 13:49 memory_monitor_summary.json
[2026-02-20 13:49:54] -rw------- 1 boinc boinc        95 Feb 20 13:49 pilot_heartbeat.json
[2026-02-20 13:49:54] -rw------- 1 boinc boinc    289340 Feb 20 13:49 log.48508763._048254.job.log.tgz.1
[2026-02-20 13:49:54] -rw------- 1 boinc boinc      6287 Feb 20 13:49 heartbeat.json
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc        27 Feb 20 13:49 wrapper_checkpoint.txt
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc      8192 Feb 20 13:49 boinc_mmap_file
[2026-02-20 13:49:54] -rw------- 1 boinc boinc      4820 Feb 20 13:49 pilotlog.txt
[2026-02-20 13:49:54] -rw------- 1 boinc boinc    817585 Feb 20 13:49 log.48508763._048254.job.log.1
[2026-02-20 13:49:54] -rw------- 1 boinc boinc       357 Feb 20 13:49 output.list
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc       620 Feb 20 13:49 runtime_log
[2026-02-20 13:49:54] -rw------- 1 boinc boinc   1126400 Feb 20 13:49 result.tar.gz
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc      8901 Feb 20 13:49 runtime_log.err
[2026-02-20 13:49:54] -rw------- 1 boinc boinc       658 Feb 20 13:49 9OyMDmTaJD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBKyKDmhgO0Om.diag
[2026-02-20 13:49:54] -rw-r--r-- 1 boinc boinc     12735 Feb 20 13:49 stderr.txt
[2026-02-20 13:49:54] HITS file was successfully produced:
[2026-02-20 13:49:54] -rw------- 1 boinc boinc 281605692 Feb 20 13:48 shared/HITS.pool.root.1
[2026-02-20 13:49:54]  *** Contents of shared directory: ***
[2026-02-20 13:49:54] total 939456
[2026-02-20 13:49:54] -rw-r--r-- 2 boinc boinc 678643009 Feb 20 12:15 ATLAS.root_0
[2026-02-20 13:49:54] -rw-r--r-- 2 boinc boinc    597963 Feb 20 12:15 input.tar.gz
[2026-02-20 13:49:54] -rw-r--r-- 2 boinc boinc     15845 Feb 20 12:15 start_atlas.sh
[2026-02-20 13:49:54] -rw------- 1 boinc boinc 281605692 Feb 20 13:48 HITS.pool.root.1
[2026-02-20 13:49:54] -rw------- 1 boinc boinc   1126400 Feb 20 13:49 result.tar.gz
13:49:56 (2004539): run_atlas exited; CPU time 21287.922946
13:49:56 (2004539): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN