Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:28:09 (65949): wrapper (7.7.26015): starting
18:28:09 (65949): wrapper: running run_atlas (--nthreads 12)
[2026-02-19 18:28:09] Arguments: --nthreads 12
[2026-02-19 18:28:09] Threads: 12
[2026-02-19 18:28:09] Checking for CVMFS
[2026-02-19 18:28:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 18:28:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 18:28:11] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 18:28:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 18:28:12] 2.13.3.0 9428 151414 217992 156428 1 163 17094410 18491392 22158 16776704 0 686909788 99.375 1061673062 32951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-19 18:28:12] CVMFS is ok
[2026-02-19 18:28:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 18:28:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 18:28:12] Further information can be found at the LHC@home message board.
[2026-02-19 18:28:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 18:28:12] Checking for apptainer binary...
[2026-02-19 18:28:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 18:28:12] Running /usr/bin/apptainer --version
[2026-02-19 18:28:12] apptainer version 1.4.5-2.el9
[2026-02-19 18:28:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 18:28:13] c-8-38.aglt2.org
[2026-02-19 18:28:13] apptainer works
[2026-02-19 18:28:13] Set ATHENA_PROC_NUMBER=12
[2026-02-19 18:28:13] Set ATHENA_CORE_NUMBER=12
[2026-02-19 18:28:13] Starting ATLAS job with PandaID=7021123314
[2026-02-19 18:28:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 08:40:39]  *** The last 200 lines of the pilot log: ***
[2026-02-20 08:40:39] 2026-02-20 12:15:50,837 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7021123314/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 08:40:39] 2026-02-20 12:15:50,842 | INFO     | extracted standard info from prmon json
[2026-02-20 08:40:39] 2026-02-20 12:15:50,843 | INFO     | extracted standard memory fields from prmon json
[2026-02-20 08:40:39] 2026-02-20 12:15:50,843 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-20 08:40:39] 2026-02-20 12:15:50,848 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-20 08:40:39] 2026-02-20 12:15:50,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-20 08:40:39] 2026-02-20 12:15:50,907 | INFO     | fitting pss+swap vs Time
[2026-02-20 08:40:39] 2026-02-20 12:15:50,909 | INFO     | sum of square deviations: 132394810578.15413
[2026-02-20 08:40:39] 2026-02-20 12:15:51,124 | INFO     | sum of deviations: -192490899385.3652
[2026-02-20 08:40:39] 2026-02-20 12:15:51,124 | INFO     | mean x: 1771566788.822045
[2026-02-20 08:40:39] 2026-02-20 12:15:51,124 | INFO     | mean y: 2761442.0942895086
[2026-02-20 08:40:39] 2026-02-20 12:15:51,195 | INFO     | intersect: 2578470286.0621314
[2026-02-20 08:40:39] 2026-02-20 12:15:51,196 | INFO     | chi2: 6.315737075866326
[2026-02-20 08:40:39] 2026-02-20 12:15:51,197 | INFO     | sum of square deviations: 129775127694.40642
[2026-02-20 08:40:39] 2026-02-20 12:15:51,580 | INFO     | monitor loop #2228: job 0:7021123314 is in state 'finished'
[2026-02-20 08:40:39] 2026-02-20 12:15:51,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-20 08:40:39] 2026-02-20 12:15:52,066 | INFO     | sum of deviations: 79930001909.3423
[2026-02-20 08:40:39] 2026-02-20 12:15:52,066 | INFO     | mean x: 1771566636.326203
[2026-02-20 08:40:39] 2026-02-20 12:15:52,066 | INFO     | mean y: 2777301.814171123
[2026-02-20 08:40:39] 2026-02-20 12:15:52,066 | INFO     | intersect: -1088351076.4797218
[2026-02-20 08:40:39] 2026-02-20 12:15:52,067 | INFO     | chi2: 2.593603606862098
[2026-02-20 08:40:39] 2026-02-20 12:15:52,067 | INFO     | current chi2=2.593603606862098 (change=58.9342688635224 %)
[2026-02-20 08:40:39] 2026-02-20 12:15:52,068 | INFO     | sum of square deviations: 127190236038.6328
[2026-02-20 08:40:39] 2026-02-20 12:15:52,660 | INFO     | sum of deviations: 78656971671.11298
[2026-02-20 08:40:39] 2026-02-20 12:15:52,661 | INFO     | mean x: 1771566483.8304172
[2026-02-20 08:40:39] 2026-02-20 12:15:52,661 | INFO     | mean y: 2777226.66756393
[2026-02-20 08:40:39] 2026-02-20 12:15:52,661 | INFO     | intersect: -1092794721.8727102
[2026-02-20 08:40:39] 2026-02-20 12:15:52,712 | INFO     | chi2: 2.593663578857734
[2026-02-20 08:40:39] 2026-02-20 12:15:52,717 | INFO     | current chi2=2.593663578857734 (change=-0.00231230383384568 %)
[2026-02-20 08:40:39] 2026-02-20 12:15:52,717 | INFO     | right removable region: 742
[2026-02-20 08:40:39] 2026-02-20 12:15:52,718 | INFO     | sum of square deviations: 129774795914.75266
[2026-02-20 08:40:39] 2026-02-20 12:15:53,034 | INFO     | sum of deviations: -373492088337.2396
[2026-02-20 08:40:39] 2026-02-20 12:15:53,034 | INFO     | mean x: 1771566941.3275402
[2026-02-20 08:40:39] 2026-02-20 12:15:53,034 | INFO     | mean y: 2771958.560160428
[2026-02-20 08:40:39] 2026-02-20 12:15:53,034 | INFO     | intersect: 5101344696.677035
[2026-02-20 08:40:39] 2026-02-20 12:15:53,062 | INFO     | chi2: 4.2713873405014535
[2026-02-20 08:40:39] 2026-02-20 12:15:53,062 | INFO     | current chi2=4.2713873405014535 (change=32.36913935471974 %)
[2026-02-20 08:40:39] 2026-02-20 12:15:53,063 | INFO     | sum of square deviations: 127189663736.63266
[2026-02-20 08:40:39] 2026-02-20 12:15:53,237 | INFO     | sum of deviations: -402741806004.22076
[2026-02-20 08:40:39] 2026-02-20 12:15:53,237 | INFO     | mean x: 1771567093.8304172
[2026-02-20 08:40:39] 2026-02-20 12:15:53,238 | INFO     | mean y: 2773681.744279946
[2026-02-20 08:40:39] 2026-02-20 12:15:53,238 | INFO     | intersect: 5612381490.003751
[2026-02-20 08:40:39] 2026-02-20 12:15:53,260 | INFO     | chi2: 4.208228803502403
[2026-02-20 08:40:39] 2026-02-20 12:15:53,260 | INFO     | current chi2=4.208228803502403 (change=1.4786422294269257 %)
[2026-02-20 08:40:39] 2026-02-20 12:15:53,260 | INFO     | left removable region: 20
[2026-02-20 08:40:39] 2026-02-20 12:15:53,261 | INFO     | sum of square deviations: 116707097030.50015
[2026-02-20 08:40:39] 2026-02-20 12:15:53,441 | INFO     | sum of deviations: -114710401939.23692
[2026-02-20 08:40:39] 2026-02-20 12:15:53,441 | INFO     | mean x: 1771567063.3421052
[2026-02-20 08:40:39] 2026-02-20 12:15:53,441 | INFO     | mean y: 2788730.4584487537
[2026-02-20 08:40:39] 2026-02-20 12:15:53,441 | INFO     | intersect: 1744046760.76639
[2026-02-20 08:40:39] 2026-02-20 12:15:53,481 | INFO     | chi2: 0.38011736444160327
[2026-02-20 08:40:39] 2026-02-20 12:15:53,481 | INFO     | current memory leak: -0.98 B/s (using 722 data points, chi2=0.38)
[2026-02-20 08:40:39] 2026-02-20 12:15:53,482 | INFO     | could have reported an average CPU frequency of 2600 MHz (29 samples)
[2026-02-20 08:40:39] 2026-02-20 12:15:53,482 | INFO     | ..............................
[2026-02-20 08:40:39] 2026-02-20 12:15:53,482 | INFO     | . Timing measurements:
[2026-02-20 08:40:39] 2026-02-20 12:15:53,482 | INFO     | . get job = 0 s
[2026-02-20 08:40:39] 2026-02-20 12:15:53,483 | INFO     | . initial setup = 33 s
[2026-02-20 08:40:39] 2026-02-20 12:15:53,483 | INFO     | . payload setup = 30 s
[2026-02-20 08:40:39] 2026-02-20 12:15:53,483 | INFO     | . stage-in = 0 s
[2026-02-20 08:40:39] 2026-02-20 12:15:53,483 | INFO     | . payload execution = 45907 s
[2026-02-20 08:40:39] 2026-02-20 12:15:53,483 | INFO     | . stage-out = 14 s
[2026-02-20 08:40:39] 2026-02-20 12:15:53,483 | INFO     | . log creation = 2 s
[2026-02-20 08:40:39] 2026-02-20 12:15:53,483 | INFO     | ..............................
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | 
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | job summary report
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | --------------------------------------------------
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | PanDA job id: 7021123314
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | task id: 48508763
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | errors: (none)
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-20 08:40:39] 2026-02-20 12:15:54,670 | INFO     | pilot state: finished 
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | transexitcode: 0
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | exeerrorcode: 0
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | exeerrordiag: 
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | exitcode: 0
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | exitmsg: OK
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | cpuconsumptiontime: 71714 s
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | nevents: 400
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | neventsw: 0
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | pid: 76571
[2026-02-20 08:40:39] 2026-02-20 12:15:54,671 | INFO     | pgrp: 76571
[2026-02-20 08:40:39] 2026-02-20 12:15:54,672 | INFO     | corecount: 12
[2026-02-20 08:40:39] 2026-02-20 12:15:54,672 | INFO     | event service: False
[2026-02-20 08:40:39] 2026-02-20 12:15:54,672 | INFO     | sizes: {0: 2281829, 1: 2281829, 2: 2282318, 45943: 2326747, 45945: 2326746, 45960: 2335800, 45961: 2335984, 45964: 2336178}
[2026-02-20 08:40:39] 2026-02-20 12:15:54,672 | INFO     | --------------------------------------------------
[2026-02-20 08:40:39] 2026-02-20 12:15:54,672 | INFO     | 
[2026-02-20 08:40:39] 2026-02-20 12:15:54,672 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-20 08:40:39] 2026-02-20 12:15:54,732 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,732 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,732 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,732 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,733 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,734 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 08:40:39] 2026-02-20 12:15:54,735 | INFO     | job 7021123314 has completed (purged errors)
[2026-02-20 08:40:39] 2026-02-20 12:15:54,735 | INFO     | overall cleanup function is called
[2026-02-20 08:40:39] 2026-02-20 12:15:55,827 | INFO     | --- collectZombieJob: --- 10, [76571]
[2026-02-20 08:40:39] 2026-02-20 12:15:55,827 | INFO     | zombie collector waiting for pid 76571
[2026-02-20 08:40:39] 2026-02-20 12:15:55,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 08:40:39] 2026-02-20 12:15:55,827 | INFO     | collected zombie processes
[2026-02-20 08:40:39] 2026-02-20 12:15:55,827 | INFO     | will attempt to kill all subprocesses of pid=76571
[2026-02-20 08:40:39] 2026-02-20 12:16:03,352 | INFO     | PID=69931 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-20 08:40:39] 2026-02-20 12:16:03,352 | INFO     | .. there are 37 such processes running
[2026-02-20 08:40:39] 2026-02-20 12:16:04,972 | INFO     | process IDs to be killed: [76571] (in reverse order)
[2026-02-20 08:40:39] 2026-02-20 12:16:07,147 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 08:40:39] 2026-02-20 12:16:07,147 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 08:40:39] 2026-02-20 12:16:07,166 | INFO     | did not find any defunct processes belonging to 76571
[2026-02-20 08:40:39] 2026-02-20 12:16:07,238 | INFO     | did not find any defunct processes belonging to 76571
[2026-02-20 08:40:39] 2026-02-20 12:16:07,337 | INFO     | ready for new job
[2026-02-20 08:40:39] 2026-02-20 12:16:07,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 08:40:39] 2026-02-20 12:16:07,344 | INFO     | **************************************
[2026-02-20 08:40:39] 2026-02-20 12:16:07,345 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 08:40:39] 2026-02-20 12:16:07,345 | INFO     | **************************************
[2026-02-20 08:40:39] 2026-02-20 12:16:07,345 | INFO     | 
[2026-02-20 08:40:39] 2026-02-20 12:16:07,347 | INFO     | architecture information:
[2026-02-20 08:40:39] 2026-02-20 12:16:07,370 | INFO     | executing command: cat /etc/os-release
[2026-02-20 08:40:39] 2026-02-20 12:16:07,406 | INFO     | cat /etc/os-release:
[2026-02-20 08:40:39] NAME="CentOS Linux"
[2026-02-20 08:40:39] VERSION="7 (Core)"
[2026-02-20 08:40:39] ID="centos"
[2026-02-20 08:40:39] ID_LIKE="rhel fedora"
[2026-02-20 08:40:39] VERSION_ID="7"
[2026-02-20 08:40:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 08:40:39] ANSI_COLOR="0;31"
[2026-02-20 08:40:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 08:40:39] HOME_URL="https://www.centos.org/"
[2026-02-20 08:40:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 08:40:39] 
[2026-02-20 08:40:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 08:40:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 08:40:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 08:40:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 08:40:39] 
[2026-02-20 08:40:39] 2026-02-20 12:16:07,406 | INFO     | **************************************
[2026-02-20 08:40:39] 2026-02-20 12:16:07,910 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-20 08:40:39] 2026-02-20 12:16:08,109 | INFO     | sufficient remaining disk space (89552584704 B)
[2026-02-20 08:40:39] 2026-02-20 12:16:08,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 08:40:39] 2026-02-20 12:16:08,111 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 08:40:39] 2026-02-20 12:16:08,111 | INFO     | update_server=False
[2026-02-20 08:40:39] 2026-02-20 12:16:08,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 08:40:39] 2026-02-20 12:16:08,240 | INFO     | all job control threads have been joined
[2026-02-20 08:40:39] 2026-02-20 12:16:08,240 | INFO     | all data control threads have been joined
[2026-02-20 08:40:39] 2026-02-20 12:16:08,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 08:40:39] 2026-02-20 12:16:08,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 08:40:39] 2026-02-20 12:16:08,483 | INFO     | aborting loop
[2026-02-20 08:40:39] 2026-02-20 12:16:09,133 | INFO     | [job] retrieve thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 08:40:39] 2026-02-20 12:16:09,238 | INFO     | [job] validate thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,246 | INFO     | all payload control threads have been joined
[2026-02-20 08:40:39] 2026-02-20 12:16:09,257 | INFO     | [job] control thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,265 | INFO     | [data] control thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,427 | INFO     | [job] queue monitor thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,498 | INFO     | [job] job monitor thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,634 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,641 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,648 | INFO     | [data] copytool_in thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,654 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:09,665 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:10,259 | INFO     | [payload] control thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:10,542 | INFO     | [payload] failed_post thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:10,778 | INFO     | [payload] validate_post thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:11,090 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 08:40:39] 2026-02-20 12:16:11,155 | INFO     | [data] copytool_out thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:15,100 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 08:40:39] 2026-02-20 12:16:28,530 | INFO     | [monitor] cgroup control has ended
[2026-02-20 08:40:39] 2026-02-20 12:16:29,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967446005568)>', '<ExcThread(monitor, started 139966726264576)>']
[2026-02-20 08:40:39] 2026-02-20 12:16:34,183 | INFO     | all workflow threads have been joined
[2026-02-20 08:40:39] 2026-02-20 12:16:34,183 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 08:40:39] 2026-02-20 12:16:34,184 | INFO     | traces error code: 0
[2026-02-20 08:40:39] 2026-02-20 12:16:34,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 08:40:39] 2026-02-20 12:16:39,553 | INFO     | PID=69931 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-20 08:40:39] 2026-02-20 12:16:39,554 | INFO     | .. there are 37 such processes running
[2026-02-20 08:40:39] 2026-02-20 12:16:39,559 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 08:40:39] 2026-02-20 12:16:39,559 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 08:40:39] 2026-02-20 12:16:39,559 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 08:40:39] 2026-02-20 12:16:39,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 08:40:39] 2026-02-20 12:16:39,559 | INFO     | [monitor] control thread has ended
[2026-02-20 08:40:39] 2026-02-20 12:16:39,839 [wrapper] ==== pilot stdout END ====
[2026-02-20 08:40:39] 2026-02-20 12:16:39,936 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 08:40:39] 2026-02-20 12:16:39,946 [wrapper] pilotpid: 69931
[2026-02-20 08:40:39] 2026-02-20 12:16:39,971 [wrapper] Pilot exit status: 0
[2026-02-20 08:40:39] 2026-02-20 12:16:40,168 [wrapper] pandaids: 7021123314
[2026-02-20 08:40:39] 2026-02-20 12:16:41,286 [wrapper] cleanup supervisor_pilot 1714087 69932
[2026-02-20 08:40:39] 2026-02-20 12:16:41,331 [wrapper] Test setup, not cleaning
[2026-02-20 08:40:39] 2026-02-20 12:16:41,381 [wrapper] apfmon messages muted
[2026-02-20 08:40:39] 2026-02-20 12:16:41,425 [wrapper] ==== wrapper stdout END ====
[2026-02-20 08:40:39] 2026-02-20 12:16:41,489 [wrapper] ==== wrapper stderr END ====
[2026-02-20 08:40:39]  *** Error codes and diagnostics ***
[2026-02-20 08:40:39]     "exeErrorCode": 0,
[2026-02-20 08:40:39]     "exeErrorDiag": "",
[2026-02-20 08:40:39]     "pilotErrorCode": 0,
[2026-02-20 08:40:39]     "pilotErrorDiag": "",
[2026-02-20 08:40:39]  *** Listing of results directory ***
[2026-02-20 08:40:39] total 953492
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas      5111 Feb 19 08:45 queuedata.json
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas    584627 Feb 19 08:45 pilot3.tar.gz
[2026-02-20 08:40:39] -rwx------. 1 boincer umatlas     36322 Feb 19 08:47 runpilot2-wrapper.sh
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas       100 Feb 19 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 08:40:39] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 19 18:28 run_atlas
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas       105 Feb 19 18:28 job.xml
[2026-02-20 08:40:39] -rw-r--r--. 2 boincer umatlas 678254738 Feb 19 18:28 EVNT.48508760._000927.pool.root.1
[2026-02-20 08:40:39] -rw-r--r--. 2 boincer umatlas     15845 Feb 19 18:28 start_atlas.sh
[2026-02-20 08:40:39] drwxrwx--x. 2 boincer umatlas      4096 Feb 19 18:28 shared
[2026-02-20 08:40:39] -rw-r--r--. 2 boincer umatlas    597959 Feb 19 18:28 input.tar.gz
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas         0 Feb 19 18:28 boinc_lockfile
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas      2552 Feb 19 18:28 pandaJob.out
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas        57 Feb 19 18:28 setup.sh.local
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas   1001559 Feb 19 18:29 agis_schedconf.cvmfs.json
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas       433 Feb 19 18:29 workernode_map.json
[2026-02-20 08:40:39] drwx------. 5 boincer umatlas      4096 Feb 19 18:29 pilot3
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas 282527952 Feb 20 07:10 HITS.48508763._048121.pool.root.1
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas       531 Feb 20 07:11 boinc_task_state.xml
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas      1053 Feb 20 07:15 memory_monitor_summary.json
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas   1513015 Feb 20 07:15 agis_ddmendpoints.agis.ALL.json
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas    887060 Feb 20 07:15 log.48508763._048121.job.log.tgz.1
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas      6409 Feb 20 07:15 heartbeat.json
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas        95 Feb 20 07:16 pilot_heartbeat.json
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas       821 Feb 20 07:16 pilotlog.txt
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas   4941127 Feb 20 07:16 log.48508763._048121.job.log.1
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas       357 Feb 20 07:16 output.list
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas       620 Feb 20 07:16 runtime_log
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas   5847040 Feb 20 07:16 result.tar.gz
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas      9334 Feb 20 07:16 runtime_log.err
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas       658 Feb 20 07:16 G5rKDmFYJD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmdAyKDmQqumjm.diag
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas      6661 Feb 20 08:40 init_data.xml
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas      8192 Feb 20 08:40 boinc_mmap_file
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas        28 Feb 20 08:40 wrapper_checkpoint.txt
[2026-02-20 08:40:39] -rw-r--r--. 1 boincer umatlas     21268 Feb 20 08:40 stderr.txt
[2026-02-20 08:40:39] HITS file was successfully produced:
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas 282527952 Feb 20 07:10 shared/HITS.pool.root.1
[2026-02-20 08:40:39]  *** Contents of shared directory: ***
[2026-02-20 08:40:39] total 944588
[2026-02-20 08:40:39] -rw-r--r--. 2 boincer umatlas 678254738 Feb 19 18:28 ATLAS.root_0
[2026-02-20 08:40:39] -rw-r--r--. 2 boincer umatlas     15845 Feb 19 18:28 start_atlas.sh
[2026-02-20 08:40:39] -rw-r--r--. 2 boincer umatlas    597959 Feb 19 18:28 input.tar.gz
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas 282527952 Feb 20 07:10 HITS.pool.root.1
[2026-02-20 08:40:39] -rw-------. 1 boincer umatlas   5847040 Feb 20 07:16 result.tar.gz
08:40:41 (65949): run_atlas exited; CPU time 73491.320784
08:40:41 (65949): called boinc_finish(0)

</stderr_txt>
]]>

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