Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:56:01 (458655): wrapper (7.7.26015): starting
09:56:01 (458655): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 09:56:01] Arguments: --nthreads 4
[2026-02-20 09:56:01] Threads: 4
[2026-02-20 09:56:01] Checking for CVMFS
[2026-02-20 09:56:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 09:56:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 09:56:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 09:56:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 09:56:01] 2.9.2.0 4299 2627 86744 156441 3 50 32054351 36864001 0 130560 0 1121236 99.984 99047 15245 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 09:56:01] CVMFS is ok
[2026-02-20 09:56:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 09:56:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 09:56:01] Further information can be found at the LHC@home message board.
[2026-02-20 09:56:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 09:56:01] Checking for apptainer binary...
[2026-02-20 09:56:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 09:56:01] Running /usr/bin/apptainer --version
[2026-02-20 09:56:01] apptainer version 1.4.1-1.1
[2026-02-20 09:56:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 09:56:01] thA373a
[2026-02-20 09:56:01] apptainer works
[2026-02-20 09:56:01] Set ATHENA_PROC_NUMBER=4
[2026-02-20 09:56:01] Set ATHENA_CORE_NUMBER=4
[2026-02-20 09:56:01] Starting ATLAS job with PandaID=7021120555
[2026-02-20 09:56:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 11:45:45]  *** The last 200 lines of the pilot log: ***
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | job 7021120555 has completed (purged errors)
[2026-02-20 11:45:45] 2026-02-20 10:45:13,224 | INFO     | overall cleanup function is called
[2026-02-20 11:45:45] 2026-02-20 10:45:14,231 | INFO     | --- collectZombieJob: --- 10, [467306]
[2026-02-20 11:45:45] 2026-02-20 10:45:14,232 | INFO     | zombie collector waiting for pid 467306
[2026-02-20 11:45:45] 2026-02-20 10:45:14,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 11:45:45] 2026-02-20 10:45:14,232 | INFO     | collected zombie processes
[2026-02-20 11:45:45] 2026-02-20 10:45:14,232 | INFO     | will attempt to kill all subprocesses of pid=467306
[2026-02-20 11:45:45] 2026-02-20 10:45:14,281 | INFO     | process IDs to be killed: [467306] (in reverse order)
[2026-02-20 11:45:45] 2026-02-20 10:45:14,315 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 11:45:45] 2026-02-20 10:45:14,315 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 11:45:45] 2026-02-20 10:45:14,317 | INFO     | did not find any defunct processes belonging to 467306
[2026-02-20 11:45:45] 2026-02-20 10:45:14,319 | INFO     | did not find any defunct processes belonging to 467306
[2026-02-20 11:45:45] 2026-02-20 10:45:14,319 | INFO     | ready for new job
[2026-02-20 11:45:45] 2026-02-20 10:45:14,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 11:45:45] 2026-02-20 10:45:14,320 | INFO     | **************************************
[2026-02-20 11:45:45] 2026-02-20 10:45:14,320 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 11:45:45] 2026-02-20 10:45:14,320 | INFO     | **************************************
[2026-02-20 11:45:45] 2026-02-20 10:45:14,320 | INFO     | 
[2026-02-20 11:45:45] 2026-02-20 10:45:14,320 | INFO     | architecture information:
[2026-02-20 11:45:45] 2026-02-20 10:45:14,321 | INFO     | executing command: cat /etc/os-release
[2026-02-20 11:45:45] 2026-02-20 10:45:14,334 | INFO     | cat /etc/os-release:
[2026-02-20 11:45:45] NAME="CentOS Linux"
[2026-02-20 11:45:45] VERSION="7 (Core)"
[2026-02-20 11:45:45] ID="centos"
[2026-02-20 11:45:45] ID_LIKE="rhel fedora"
[2026-02-20 11:45:45] VERSION_ID="7"
[2026-02-20 11:45:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 11:45:45] ANSI_COLOR="0;31"
[2026-02-20 11:45:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 11:45:45] HOME_URL="https://www.centos.org/"
[2026-02-20 11:45:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 11:45:45] 
[2026-02-20 11:45:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 11:45:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 11:45:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 11:45:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 11:45:45] 
[2026-02-20 11:45:45] 2026-02-20 10:45:14,334 | INFO     | **************************************
[2026-02-20 11:45:45] 2026-02-20 10:45:14,837 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 11:45:45] 2026-02-20 10:45:14,854 | INFO     | sufficient remaining disk space (324651712512 B)
[2026-02-20 11:45:45] 2026-02-20 10:45:14,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 11:45:45] 2026-02-20 10:45:14,855 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 11:45:45] 2026-02-20 10:45:14,855 | INFO     | update_server=False
[2026-02-20 11:45:45] 2026-02-20 10:45:14,855 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 11:45:45] 2026-02-20 10:45:14,855 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 11:45:45] 2026-02-20 10:45:14,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 11:45:45] 2026-02-20 10:45:14,855 | INFO     | aborting loop
[2026-02-20 11:45:45] 2026-02-20 10:45:15,027 | INFO     | all job control threads have been joined
[2026-02-20 11:45:45] 2026-02-20 10:45:15,143 | INFO     | all payload control threads have been joined
[2026-02-20 11:45:45] 2026-02-20 10:45:15,530 | INFO     | all data control threads have been joined
[2026-02-20 11:45:45] 2026-02-20 10:45:15,861 | INFO     | [job] retrieve thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:15,861 | INFO     | [job] queue monitor thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:15,861 | INFO     | [job] job monitor thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:15,873 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:15,895 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:16,033 | INFO     | [job] control thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:16,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 11:45:45] 2026-02-20 10:45:16,146 | INFO     | [data] copytool_in thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:16,148 | INFO     | [payload] control thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:16,238 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:16,527 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 11:45:45] 2026-02-20 10:45:16,536 | INFO     | [data] control thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:16,820 | INFO     | [payload] validate_post thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:17,058 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:17,268 | INFO     | [job] validate thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:17,333 | INFO     | [payload] failed_post thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:18,054 | INFO     | [data] copytool_out thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:20,534 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 11:45:45] 2026-02-20 10:45:21,587 | INFO     | [monitor] cgroup control has ended
[2026-02-20 11:45:45] 2026-02-20 10:45:23,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748167558976)>', '<ExcThread(monitor, started 139747657754368)>']
[2026-02-20 11:45:45] 2026-02-20 10:45:28,547 | INFO     | all workflow threads have been joined
[2026-02-20 11:45:45] 2026-02-20 10:45:28,547 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 11:45:45] 2026-02-20 10:45:28,547 | INFO     | traces error code: 0
[2026-02-20 11:45:45] 2026-02-20 10:45:28,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 11:45:45] 2026-02-20 10:45:45,161 | INFO     | PID=462763 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-20 11:45:45] 2026-02-20 10:45:45,161 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 11:45:45] 2026-02-20 10:45:45,161 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 11:45:45] 2026-02-20 10:45:45,161 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 11:45:45] 2026-02-20 10:45:45,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 11:45:45] 2026-02-20 10:45:45,161 | INFO     | [monitor] control thread has ended
[2026-02-20 11:45:45] 2026-02-20 10:45:45,241 [wrapper] ==== pilot stdout END ====
[2026-02-20 11:45:45] 2026-02-20 10:45:45,245 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 11:45:45] 2026-02-20 10:45:45,249 [wrapper] pilotpid: 462763
[2026-02-20 11:45:45] 2026-02-20 10:45:45,252 [wrapper] Pilot exit status: 0
[2026-02-20 11:45:45] 2026-02-20 10:45:45,263 [wrapper] pandaids: 7021120555
[2026-02-20 11:45:45] 2026-02-20 10:45:45,286 [wrapper] cleanup supervisor_pilot  476932 462764
[2026-02-20 11:45:45] 2026-02-20 10:45:45,289 [wrapper] Test setup, not cleaning
[2026-02-20 11:45:45] 2026-02-20 10:45:45,293 [wrapper] apfmon messages muted
[2026-02-20 11:45:45] 2026-02-20 10:45:45,297 [wrapper] ==== wrapper stdout END ====
[2026-02-20 11:45:45] 2026-02-20 10:45:45,301 [wrapper] ==== wrapper stderr END ====
[2026-02-20 11:45:45]  *** Error codes and diagnostics ***
[2026-02-20 11:45:45]     "exeErrorCode": 65,
[2026-02-20 11:45:45]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-02-20 11:45:45]     "pilotErrorCode": 1305,
[2026-02-20 11:45:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-02-20 11:45:45]  *** Listing of results directory ***
[2026-02-20 11:45:45] total 665880
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc      5111 Feb 19 14:45 queuedata.json
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc    584627 Feb 19 14:45 pilot3.tar.gz
[2026-02-20 11:45:45] -rwx------ 1 boinc boinc     36322 Feb 19 14:46 runpilot2-wrapper.sh
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc       100 Feb 20 09:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 11:45:45] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 09:56 run_atlas
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc       105 Feb 20 09:56 job.xml
[2026-02-20 11:45:45] -rw-r--r-- 2 boinc boinc 675480536 Feb 20 09:56 EVNT.48508760._000903.pool.root.1
[2026-02-20 11:45:45] -rw-r--r-- 2 boinc boinc    597959 Feb 20 09:56 input.tar.gz
[2026-02-20 11:45:45] -rw-r--r-- 2 boinc boinc     15845 Feb 20 09:56 start_atlas.sh
[2026-02-20 11:45:45] drwxrwx--x 2 boinc boinc      4096 Feb 20 09:56 shared
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc         0 Feb 20 09:56 boinc_setup_complete
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc      6377 Feb 20 09:56 init_data.xml
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc         0 Feb 20 09:56 boinc_lockfile
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc      2552 Feb 20 09:56 pandaJob.out
[2026-02-20 11:45:45] -rw------- 1 boinc boinc   1001567 Feb 20 09:56 agis_schedconf.cvmfs.json
[2026-02-20 11:45:45] -rw------- 1 boinc boinc   1513015 Feb 20 09:56 agis_ddmendpoints.agis.ALL.json
[2026-02-20 11:45:45] -rw------- 1 boinc boinc       428 Feb 20 09:56 workernode_map.json
[2026-02-20 11:45:45] drwx------ 5 boinc boinc      4096 Feb 20 09:56 pilot3
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc       531 Feb 20 11:42 boinc_task_state.xml
[2026-02-20 11:45:45] -rw------- 1 boinc boinc      1015 Feb 20 11:43 memory_monitor_summary.json
[2026-02-20 11:45:45] -rw------- 1 boinc boinc    283751 Feb 20 11:43 log.48508763._046888.job.log.tgz.1
[2026-02-20 11:45:45] -rw------- 1 boinc boinc      8079 Feb 20 11:45 heartbeat.json
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc      8192 Feb 20 11:45 boinc_mmap_file
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc        27 Feb 20 11:45 wrapper_checkpoint.txt
[2026-02-20 11:45:45] -rw------- 1 boinc boinc       746 Feb 20 11:45 pilotlog.txt
[2026-02-20 11:45:45] -rw------- 1 boinc boinc        95 Feb 20 11:45 pilot_heartbeat.json
[2026-02-20 11:45:45] -rw------- 1 boinc boinc    948740 Feb 20 11:45 log.48508763._046888.job.log.1
[2026-02-20 11:45:45] -rw------- 1 boinc boinc       188 Feb 20 11:45 output.list
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc       620 Feb 20 11:45 runtime_log
[2026-02-20 11:45:45] -rw------- 1 boinc boinc   1249280 Feb 20 11:45 result.tar.gz
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc      8749 Feb 20 11:45 runtime_log.err
[2026-02-20 11:45:45] -rw------- 1 boinc boinc       658 Feb 20 11:45 ULsLDmLXJD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm73xKDmVlWsfn.diag
[2026-02-20 11:45:45] -rw-r--r-- 1 boinc boinc     13063 Feb 20 11:45 stderr.txt
[2026-02-20 11:45:45] No HITS result produced
[2026-02-20 11:45:45]  *** Contents of shared directory: ***
[2026-02-20 11:45:45] total 661476
[2026-02-20 11:45:45] -rw-r--r-- 2 boinc boinc 675480536 Feb 20 09:56 ATLAS.root_0
[2026-02-20 11:45:45] -rw-r--r-- 2 boinc boinc    597959 Feb 20 09:56 input.tar.gz
[2026-02-20 11:45:45] -rw-r--r-- 2 boinc boinc     15845 Feb 20 09:56 start_atlas.sh
[2026-02-20 11:45:45] -rw------- 1 boinc boinc   1249280 Feb 20 11:45 result.tar.gz
11:45:46 (458655): run_atlas exited; CPU time 24573.039901
11:45:46 (458655): called boinc_finish(0)

</stderr_txt>
]]>

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