Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:35:54 (403748): wrapper (7.7.26015): starting
04:35:54 (403748): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 04:35:54] Arguments: --nthreads 4
[2026-02-20 04:35:54] Threads: 4
[2026-02-20 04:35:54] Checking for CVMFS
[2026-02-20 04:35:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 04:35:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 04:35:55] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 04:35:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 04:35:55] 2.9.2.0 4299 2307 85560 156433 2 49 32013100 36864000 0 130560 0 1000315 99.984 88162 15109 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 04:35:55] CVMFS is ok
[2026-02-20 04:35:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 04:35:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 04:35:55] Further information can be found at the LHC@home message board.
[2026-02-20 04:35:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 04:35:55] Checking for apptainer binary...
[2026-02-20 04:35:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 04:35:55] Running /usr/bin/apptainer --version
[2026-02-20 04:35:55] apptainer version 1.4.1-1.1
[2026-02-20 04:35:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 04:35:55] thA373a
[2026-02-20 04:35:55] apptainer works
[2026-02-20 04:35:55] Set ATHENA_PROC_NUMBER=4
[2026-02-20 04:35:55] Set ATHENA_CORE_NUMBER=4
[2026-02-20 04:35:55] Starting ATLAS job with PandaID=7021112824
[2026-02-20 04:35:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 06:21:34]  *** The last 200 lines of the pilot log: ***
[2026-02-20 06:21:34] 2026-02-20 05:21:02,514 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 06:21:34] 2026-02-20 05:21:02,514 | INFO     | job 7021112824 has completed (purged errors)
[2026-02-20 06:21:34] 2026-02-20 05:21:02,514 | INFO     | overall cleanup function is called
[2026-02-20 06:21:34] 2026-02-20 05:21:02,865 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-02-20 06:21:34] 2026-02-20 05:21:02,885 | WARNING  | process 412379 can no longer be monitored (due to stat problems) - aborting
[2026-02-20 06:21:34] 2026-02-20 05:21:02,921 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 06:21:34] 2026-02-20 05:21:02,966 | INFO     | number of running child processes to parent process 412379: 1
[2026-02-20 06:21:34] 2026-02-20 05:21:02,966 | INFO     | maximum number of monitored processes: 6
[2026-02-20 06:21:34] 2026-02-20 05:21:02,966 | INFO     | aborting job monitoring since job object (job id=7021112824) has expired
[2026-02-20 06:21:34] 2026-02-20 05:21:03,521 | INFO     | --- collectZombieJob: --- 10, [412379]
[2026-02-20 06:21:34] 2026-02-20 05:21:03,521 | INFO     | zombie collector waiting for pid 412379
[2026-02-20 06:21:34] 2026-02-20 05:21:03,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 06:21:34] 2026-02-20 05:21:03,521 | INFO     | collected zombie processes
[2026-02-20 06:21:34] 2026-02-20 05:21:03,521 | INFO     | will attempt to kill all subprocesses of pid=412379
[2026-02-20 06:21:34] 2026-02-20 05:21:03,569 | INFO     | process IDs to be killed: [412379] (in reverse order)
[2026-02-20 06:21:34] 2026-02-20 05:21:03,602 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 06:21:34] 2026-02-20 05:21:03,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 06:21:34] 2026-02-20 05:21:03,604 | INFO     | did not find any defunct processes belonging to 412379
[2026-02-20 06:21:34] 2026-02-20 05:21:03,606 | INFO     | did not find any defunct processes belonging to 412379
[2026-02-20 06:21:34] 2026-02-20 05:21:03,606 | INFO     | ready for new job
[2026-02-20 06:21:34] 2026-02-20 05:21:03,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 06:21:34] 2026-02-20 05:21:03,606 | INFO     | **************************************
[2026-02-20 06:21:34] 2026-02-20 05:21:03,607 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 06:21:34] 2026-02-20 05:21:03,607 | INFO     | **************************************
[2026-02-20 06:21:34] 2026-02-20 05:21:03,607 | INFO     | 
[2026-02-20 06:21:34] 2026-02-20 05:21:03,607 | INFO     | architecture information:
[2026-02-20 06:21:34] 2026-02-20 05:21:03,607 | INFO     | executing command: cat /etc/os-release
[2026-02-20 06:21:34] 2026-02-20 05:21:03,621 | INFO     | cat /etc/os-release:
[2026-02-20 06:21:34] NAME="CentOS Linux"
[2026-02-20 06:21:34] VERSION="7 (Core)"
[2026-02-20 06:21:34] ID="centos"
[2026-02-20 06:21:34] ID_LIKE="rhel fedora"
[2026-02-20 06:21:34] VERSION_ID="7"
[2026-02-20 06:21:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 06:21:34] ANSI_COLOR="0;31"
[2026-02-20 06:21:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 06:21:34] HOME_URL="https://www.centos.org/"
[2026-02-20 06:21:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 06:21:34] 
[2026-02-20 06:21:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 06:21:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 06:21:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 06:21:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 06:21:34] 
[2026-02-20 06:21:34] 2026-02-20 05:21:03,621 | INFO     | **************************************
[2026-02-20 06:21:34] 2026-02-20 05:21:04,124 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 06:21:34] 2026-02-20 05:21:04,141 | INFO     | sufficient remaining disk space (323705896960 B)
[2026-02-20 06:21:34] 2026-02-20 05:21:04,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 06:21:34] 2026-02-20 05:21:04,141 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 06:21:34] 2026-02-20 05:21:04,141 | INFO     | update_server=False
[2026-02-20 06:21:34] 2026-02-20 05:21:04,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 06:21:34] 2026-02-20 05:21:04,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 06:21:34] 2026-02-20 05:21:04,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 06:21:34] 2026-02-20 05:21:04,142 | INFO     | aborting loop
[2026-02-20 06:21:34] 2026-02-20 05:21:04,142 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 06:21:34] 2026-02-20 05:21:04,389 | INFO     | all data control threads have been joined
[2026-02-20 06:21:34] 2026-02-20 05:21:04,918 | INFO     | all job control threads have been joined
[2026-02-20 06:21:34] 2026-02-20 05:21:05,147 | INFO     | [job] queue monitor thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,147 | INFO     | [job] retrieve thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,147 | INFO     | [job] job monitor thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,180 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,209 | INFO     | [data] copytool_in thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,228 | INFO     | all payload control threads have been joined
[2026-02-20 06:21:34] 2026-02-20 05:21:05,394 | INFO     | [data] control thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,473 | INFO     | [payload] failed_post thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,579 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:05,924 | INFO     | [job] control thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:06,000 | INFO     | [payload] validate_post thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:06,148 | INFO     | [data] copytool_out thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:06,234 | INFO     | [payload] control thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:06,410 | INFO     | [job] validate thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:06,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 06:21:34] 2026-02-20 05:21:06,496 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:06,529 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:10,476 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 06:21:34] 2026-02-20 05:21:15,143 | INFO     | [monitor] cgroup control has ended
[2026-02-20 06:21:34] 2026-02-20 05:21:16,149 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799862855488)>', '<ExcThread(monitor, started 139799222540032)>']
[2026-02-20 06:21:34] 2026-02-20 05:21:21,152 | INFO     | all workflow threads have been joined
[2026-02-20 06:21:34] 2026-02-20 05:21:21,152 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 06:21:34] 2026-02-20 05:21:21,153 | INFO     | traces error code: 0
[2026-02-20 06:21:34] 2026-02-20 05:21:21,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 06:21:34] 2026-02-20 05:21:34,148 | INFO     | PID=407867 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-20 06:21:34] 2026-02-20 05:21:34,148 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 06:21:34] 2026-02-20 05:21:34,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 06:21:34] 2026-02-20 05:21:34,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 06:21:34] 2026-02-20 05:21:34,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 06:21:34] 2026-02-20 05:21:34,148 | INFO     | [monitor] control thread has ended
[2026-02-20 06:21:34] 2026-02-20 05:21:34,224 [wrapper] ==== pilot stdout END ====
[2026-02-20 06:21:34] 2026-02-20 05:21:34,227 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 06:21:34] 2026-02-20 05:21:34,231 [wrapper] pilotpid: 407867
[2026-02-20 06:21:34] 2026-02-20 05:21:34,235 [wrapper] Pilot exit status: 0
[2026-02-20 06:21:34] 2026-02-20 05:21:34,246 [wrapper] pandaids: 7021112824
[2026-02-20 06:21:34] 2026-02-20 05:21:34,267 [wrapper] cleanup supervisor_pilot  422013 407868
[2026-02-20 06:21:34] 2026-02-20 05:21:34,271 [wrapper] Test setup, not cleaning
[2026-02-20 06:21:34] 2026-02-20 05:21:34,275 [wrapper] apfmon messages muted
[2026-02-20 06:21:34] 2026-02-20 05:21:34,278 [wrapper] ==== wrapper stdout END ====
[2026-02-20 06:21:34] 2026-02-20 05:21:34,282 [wrapper] ==== wrapper stderr END ====
[2026-02-20 06:21:34]  *** Error codes and diagnostics ***
[2026-02-20 06:21:34]     "exeErrorCode": 0,
[2026-02-20 06:21:34]     "exeErrorDiag": "",
[2026-02-20 06:21:34]     "pilotErrorCode": 0,
[2026-02-20 06:21:34]     "pilotErrorDiag": "",
[2026-02-20 06:21:34]  *** Listing of results directory ***
[2026-02-20 06:21:34] total 954676
[2026-02-20 06:21:34] -rwx------ 1 boinc boinc     36322 Feb 19 11:28 runpilot2-wrapper.sh
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc    584627 Feb 19 11:29 pilot3.tar.gz
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc      5111 Feb 19 11:32 queuedata.json
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc       100 Feb 20 04:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 06:21:34] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 04:35 run_atlas
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc       105 Feb 20 04:35 job.xml
[2026-02-20 06:21:34] -rw-r--r-- 2 boinc boinc 688811887 Feb 20 04:35 EVNT.48508760._000862.pool.root.1
[2026-02-20 06:21:34] -rw-r--r-- 2 boinc boinc    597955 Feb 20 04:35 input.tar.gz
[2026-02-20 06:21:34] -rw-r--r-- 2 boinc boinc     15845 Feb 20 04:35 start_atlas.sh
[2026-02-20 06:21:34] drwxrwx--x 2 boinc boinc      4096 Feb 20 04:35 shared
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc         0 Feb 20 04:35 boinc_setup_complete
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc      6377 Feb 20 04:35 init_data.xml
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc         0 Feb 20 04:35 boinc_lockfile
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc      2551 Feb 20 04:35 pandaJob.out
[2026-02-20 06:21:34] -rw------- 1 boinc boinc   1001567 Feb 20 04:36 agis_schedconf.cvmfs.json
[2026-02-20 06:21:34] -rw------- 1 boinc boinc   1513015 Feb 20 04:36 agis_ddmendpoints.agis.ALL.json
[2026-02-20 06:21:34] -rw------- 1 boinc boinc       428 Feb 20 04:36 workernode_map.json
[2026-02-20 06:21:34] drwx------ 5 boinc boinc      4096 Feb 20 04:36 pilot3
[2026-02-20 06:21:34] -rw------- 1 boinc boinc 282456171 Feb 20 06:20 HITS.48508763._044844.pool.root.1
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc       530 Feb 20 06:20 boinc_task_state.xml
[2026-02-20 06:21:34] -rw------- 1 boinc boinc        95 Feb 20 06:20 pilot_heartbeat.json
[2026-02-20 06:21:34] -rw------- 1 boinc boinc      1022 Feb 20 06:20 memory_monitor_summary.json
[2026-02-20 06:21:34] -rw------- 1 boinc boinc    294016 Feb 20 06:20 log.48508763._044844.job.log.tgz.1
[2026-02-20 06:21:34] -rw------- 1 boinc boinc      6318 Feb 20 06:21 heartbeat.json
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc      8192 Feb 20 06:21 boinc_mmap_file
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc        27 Feb 20 06:21 wrapper_checkpoint.txt
[2026-02-20 06:21:34] -rw------- 1 boinc boinc       746 Feb 20 06:21 pilotlog.txt
[2026-02-20 06:21:34] -rw------- 1 boinc boinc    908773 Feb 20 06:21 log.48508763._044844.job.log.1
[2026-02-20 06:21:34] -rw------- 1 boinc boinc       357 Feb 20 06:21 output.list
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc       620 Feb 20 06:21 runtime_log
[2026-02-20 06:21:34] -rw------- 1 boinc boinc   1218560 Feb 20 06:21 result.tar.gz
[2026-02-20 06:21:34] -rw------- 1 boinc boinc       658 Feb 20 06:21 ySJNDmTRGD9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKSwKDmUILJCo.diag
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc      8901 Feb 20 06:21 runtime_log.err
[2026-02-20 06:21:34] -rw-r--r-- 1 boinc boinc     11622 Feb 20 06:21 stderr.txt
[2026-02-20 06:21:34] HITS file was successfully produced:
[2026-02-20 06:21:34] -rw------- 1 boinc boinc 282456171 Feb 20 06:20 shared/HITS.pool.root.1
[2026-02-20 06:21:34]  *** Contents of shared directory: ***
[2026-02-20 06:21:34] total 950308
[2026-02-20 06:21:34] -rw-r--r-- 2 boinc boinc 688811887 Feb 20 04:35 ATLAS.root_0
[2026-02-20 06:21:34] -rw-r--r-- 2 boinc boinc    597955 Feb 20 04:35 input.tar.gz
[2026-02-20 06:21:34] -rw-r--r-- 2 boinc boinc     15845 Feb 20 04:35 start_atlas.sh
[2026-02-20 06:21:34] -rw------- 1 boinc boinc 282456171 Feb 20 06:20 HITS.pool.root.1
[2026-02-20 06:21:34] -rw------- 1 boinc boinc   1218560 Feb 20 06:21 result.tar.gz
06:21:35 (403748): run_atlas exited; CPU time 24064.756345
06:21:35 (403748): called boinc_finish(0)

</stderr_txt>
]]>

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