Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:01:04 (1253939): wrapper (7.7.26015): starting
08:01:04 (1253939): wrapper: running run_atlas (--nthreads 3)
[2026-02-20 08:01:04] Arguments: --nthreads 3
[2026-02-20 08:01:04] Threads: 3
[2026-02-20 08:01:04] Checking for CVMFS
[2026-02-20 08:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 08:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 08:01:05] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 08:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 08:01:05] 2.9.2.0 1196108 470 58696 156438 1 50 28953546 36864001 0 130560 0 161915 99.981 17736 19597 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 08:01:05] CVMFS is ok
[2026-02-20 08:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 08:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 08:01:05] Further information can be found at the LHC@home message board.
[2026-02-20 08:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 08:01:05] Checking for apptainer binary...
[2026-02-20 08:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 08:01:05] Running /usr/bin/apptainer --version
[2026-02-20 08:01:05] apptainer version 1.4.1-1.1
[2026-02-20 08:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 08:01:05] magicA161a
[2026-02-20 08:01:05] apptainer works
[2026-02-20 08:01:05] Set ATHENA_PROC_NUMBER=3
[2026-02-20 08:01:05] Set ATHENA_CORE_NUMBER=3
[2026-02-20 08:01:05] Starting ATLAS job with PandaID=7021112872
[2026-02-20 08:01:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 09:57:29]  *** The last 200 lines of the pilot log: ***
[2026-02-20 09:57:29] 2026-02-20 08:56:47,518 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 09:57:29] 2026-02-20 08:56:47,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 09:57:29] 2026-02-20 08:56:47,518 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 09:57:29] 2026-02-20 08:56:47,518 | INFO     | job 7021112872 has completed (purged errors)
[2026-02-20 09:57:29] 2026-02-20 08:56:47,518 | INFO     | overall cleanup function is called
[2026-02-20 09:57:29] 2026-02-20 08:56:48,520 | INFO     | --- collectZombieJob: --- 10, [1262403]
[2026-02-20 09:57:29] 2026-02-20 08:56:48,521 | INFO     | zombie collector waiting for pid 1262403
[2026-02-20 09:57:29] 2026-02-20 08:56:48,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 09:57:29] 2026-02-20 08:56:48,521 | INFO     | collected zombie processes
[2026-02-20 09:57:29] 2026-02-20 08:56:48,521 | INFO     | will attempt to kill all subprocesses of pid=1262403
[2026-02-20 09:57:29] 2026-02-20 08:56:48,562 | INFO     | process IDs to be killed: [1262403] (in reverse order)
[2026-02-20 09:57:29] 2026-02-20 08:56:48,586 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 09:57:29] 2026-02-20 08:56:48,586 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 09:57:29] 2026-02-20 08:56:48,587 | INFO     | did not find any defunct processes belonging to 1262403
[2026-02-20 09:57:29] 2026-02-20 08:56:48,588 | INFO     | did not find any defunct processes belonging to 1262403
[2026-02-20 09:57:29] 2026-02-20 08:56:48,588 | INFO     | ready for new job
[2026-02-20 09:57:29] 2026-02-20 08:56:48,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 09:57:29] 2026-02-20 08:56:48,589 | INFO     | **************************************
[2026-02-20 09:57:29] 2026-02-20 08:56:48,589 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 09:57:29] 2026-02-20 08:56:48,589 | INFO     | **************************************
[2026-02-20 09:57:29] 2026-02-20 08:56:48,589 | INFO     | 
[2026-02-20 09:57:29] 2026-02-20 08:56:48,590 | INFO     | architecture information:
[2026-02-20 09:57:29] 2026-02-20 08:56:48,590 | INFO     | executing command: cat /etc/os-release
[2026-02-20 09:57:29] 2026-02-20 08:56:48,598 | INFO     | cat /etc/os-release:
[2026-02-20 09:57:29] NAME="CentOS Linux"
[2026-02-20 09:57:29] VERSION="7 (Core)"
[2026-02-20 09:57:29] ID="centos"
[2026-02-20 09:57:29] ID_LIKE="rhel fedora"
[2026-02-20 09:57:29] VERSION_ID="7"
[2026-02-20 09:57:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 09:57:29] ANSI_COLOR="0;31"
[2026-02-20 09:57:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 09:57:29] HOME_URL="https://www.centos.org/"
[2026-02-20 09:57:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 09:57:29] 
[2026-02-20 09:57:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 09:57:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 09:57:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 09:57:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 09:57:29] 
[2026-02-20 09:57:29] 2026-02-20 08:56:48,599 | INFO     | **************************************
[2026-02-20 09:57:29] 2026-02-20 08:56:49,100 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 09:57:29] 2026-02-20 08:56:49,112 | INFO     | sufficient remaining disk space (372014841856 B)
[2026-02-20 09:57:29] 2026-02-20 08:56:49,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 09:57:29] 2026-02-20 08:56:49,113 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 09:57:29] 2026-02-20 08:56:49,113 | INFO     | update_server=False
[2026-02-20 09:57:29] 2026-02-20 08:56:49,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 09:57:29] 2026-02-20 08:56:49,113 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 09:57:29] 2026-02-20 08:56:49,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 09:57:29] 2026-02-20 08:56:49,224 | INFO     | all data control threads have been joined
[2026-02-20 09:57:29] 2026-02-20 08:56:49,239 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-20 09:57:29] 2026-02-20 08:56:49,239 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-20 09:57:29] 2026-02-20 08:56:49,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 09:57:29] 2026-02-20 08:56:49,240 | INFO     | will abort loop
[2026-02-20 09:57:29] 2026-02-20 08:56:49,936 | INFO     | all job control threads have been joined
[2026-02-20 09:57:29] 2026-02-20 08:56:50,118 | INFO     | [job] queue monitor thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:50,118 | INFO     | [job] retrieve thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:50,230 | INFO     | [data] control thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:50,245 | INFO     | [job] job monitor thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:50,296 | INFO     | [data] copytool_in thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:50,334 | INFO     | all payload control threads have been joined
[2026-02-20 09:57:29] 2026-02-20 08:56:50,573 | INFO     | [payload] validate_post thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:50,653 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:50,941 | INFO     | [job] control thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:51,119 | INFO     | [data] copytool_out thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:51,206 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:51,339 | INFO     | [payload] control thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:51,526 | INFO     | [job] validate thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:51,567 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:51,576 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:51,579 | INFO     | [payload] failed_post thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:56:52,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 09:57:29] 2026-02-20 08:56:56,528 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 09:57:29] 2026-02-20 08:57:19,369 | INFO     | PID=1257981 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 09:57:29] 2026-02-20 08:57:19,369 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 09:57:29] 2026-02-20 08:57:19,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 09:57:29] 2026-02-20 08:57:19,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 09:57:29] 2026-02-20 08:57:22,597 | INFO     | [monitor] cgroup control has ended
[2026-02-20 09:57:29] 2026-02-20 08:57:24,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517275285312)>', '<ExcThread(monitor, started 140516918269696)>']
[2026-02-20 09:57:29] 2026-02-20 08:57:24,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 09:57:29] 2026-02-20 08:57:24,394 | INFO     | [monitor] control thread has ended
[2026-02-20 09:57:29] 2026-02-20 08:57:29,392 | INFO     | all workflow threads have been joined
[2026-02-20 09:57:29] 2026-02-20 08:57:29,392 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 09:57:29] 2026-02-20 08:57:29,392 | INFO     | traces error code: 0
[2026-02-20 09:57:29] 2026-02-20 08:57:29,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 09:57:29] 2026-02-20 08:57:29,442 [wrapper] ==== pilot stdout END ====
[2026-02-20 09:57:29] 2026-02-20 08:57:29,444 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 09:57:29] 2026-02-20 08:57:29,447 [wrapper] pilotpid: 1257981
[2026-02-20 09:57:29] 2026-02-20 08:57:29,449 [wrapper] Pilot exit status: 0
[2026-02-20 09:57:29] 2026-02-20 08:57:29,456 [wrapper] pandaids: 7021112872
[2026-02-20 09:57:29] 2026-02-20 08:57:29,472 [wrapper] cleanup supervisor_pilot 1267914 1257982
[2026-02-20 09:57:29] 2026-02-20 08:57:29,474 [wrapper] Test setup, not cleaning
[2026-02-20 09:57:29] 2026-02-20 08:57:29,476 [wrapper] apfmon messages muted
[2026-02-20 09:57:29] 2026-02-20 08:57:29,479 [wrapper] ==== wrapper stdout END ====
[2026-02-20 09:57:29] 2026-02-20 08:57:29,481 [wrapper] ==== wrapper stderr END ====
[2026-02-20 09:57:29]  *** Error codes and diagnostics ***
[2026-02-20 09:57:29]     "exeErrorCode": 0,
[2026-02-20 09:57:29]     "exeErrorDiag": "",
[2026-02-20 09:57:29]     "pilotErrorCode": 0,
[2026-02-20 09:57:29]     "pilotErrorDiag": "",
[2026-02-20 09:57:29]  *** Listing of results directory ***
[2026-02-20 09:57:29] total 945424
[2026-02-20 09:57:29] -rwx------ 1 boinc boinc     36322 Feb 19 11:28 runpilot2-wrapper.sh
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc    584627 Feb 19 11:29 pilot3.tar.gz
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc      5111 Feb 19 11:32 queuedata.json
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc       100 Feb 20 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 09:57:29] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 08:01 run_atlas
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc       105 Feb 20 08:01 job.xml
[2026-02-20 09:57:29] -rw-r--r-- 2 boinc boinc 681632825 Feb 20 08:01 EVNT.48508760._000863.pool.root.1
[2026-02-20 09:57:29] drwxrwx--x 2 boinc boinc      4096 Feb 20 08:01 shared
[2026-02-20 09:57:29] -rw-r--r-- 2 boinc boinc    597955 Feb 20 08:01 input.tar.gz
[2026-02-20 09:57:29] -rw-r--r-- 2 boinc boinc     15845 Feb 20 08:01 start_atlas.sh
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc         0 Feb 20 08:01 boinc_setup_complete
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc      6448 Feb 20 08:01 init_data.xml
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc         0 Feb 20 08:01 boinc_lockfile
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc      2551 Feb 20 08:01 pandaJob.out
[2026-02-20 09:57:29] -rw------- 1 boinc boinc   1001567 Feb 20 08:01 agis_schedconf.cvmfs.json
[2026-02-20 09:57:29] -rw------- 1 boinc boinc   1513015 Feb 20 08:01 agis_ddmendpoints.agis.ALL.json
[2026-02-20 09:57:29] -rw------- 1 boinc boinc       427 Feb 20 08:01 workernode_map.json
[2026-02-20 09:57:29] drwx------ 5 boinc boinc      4096 Feb 20 08:01 pilot3
[2026-02-20 09:57:29] -rw------- 1 boinc boinc 279992160 Feb 20 09:56 HITS.48508763._044892.pool.root.1
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc       530 Feb 20 09:56 boinc_task_state.xml
[2026-02-20 09:57:29] -rw------- 1 boinc boinc      1018 Feb 20 09:56 memory_monitor_summary.json
[2026-02-20 09:57:29] -rw------- 1 boinc boinc    285047 Feb 20 09:56 log.48508763._044892.job.log.tgz.1
[2026-02-20 09:57:29] -rw------- 1 boinc boinc        95 Feb 20 09:56 pilot_heartbeat.json
[2026-02-20 09:57:29] -rw------- 1 boinc boinc      6313 Feb 20 09:56 heartbeat.json
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc        27 Feb 20 09:57 wrapper_checkpoint.txt
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc      8192 Feb 20 09:57 boinc_mmap_file
[2026-02-20 09:57:29] -rw------- 1 boinc boinc      4934 Feb 20 09:57 pilotlog.txt
[2026-02-20 09:57:29] -rw------- 1 boinc boinc    998990 Feb 20 09:57 log.48508763._044892.job.log.1
[2026-02-20 09:57:29] -rw------- 1 boinc boinc       357 Feb 20 09:57 output.list
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc       620 Feb 20 09:57 runtime_log
[2026-02-20 09:57:29] -rw------- 1 boinc boinc   1300480 Feb 20 09:57 result.tar.gz
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc      8916 Feb 20 09:57 runtime_log.err
[2026-02-20 09:57:29] -rw------- 1 boinc boinc       661 Feb 20 09:57 JcTKDmURGD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1rxKDmot7NKn.diag
[2026-02-20 09:57:29] -rw-r--r-- 1 boinc boinc     11339 Feb 20 09:57 stderr.txt
[2026-02-20 09:57:29] HITS file was successfully produced:
[2026-02-20 09:57:29] -rw------- 1 boinc boinc 279992160 Feb 20 09:56 shared/HITS.pool.root.1
[2026-02-20 09:57:29]  *** Contents of shared directory: ***
[2026-02-20 09:57:29] total 940972
[2026-02-20 09:57:29] -rw-r--r-- 2 boinc boinc 681632825 Feb 20 08:01 ATLAS.root_0
[2026-02-20 09:57:29] -rw-r--r-- 2 boinc boinc    597955 Feb 20 08:01 input.tar.gz
[2026-02-20 09:57:29] -rw-r--r-- 2 boinc boinc     15845 Feb 20 08:01 start_atlas.sh
[2026-02-20 09:57:29] -rw------- 1 boinc boinc 279992160 Feb 20 09:56 HITS.pool.root.1
[2026-02-20 09:57:29] -rw------- 1 boinc boinc   1300480 Feb 20 09:57 result.tar.gz
09:57:31 (1253939): run_atlas exited; CPU time 20140.596130
09:57:31 (1253939): called boinc_finish(0)

</stderr_txt>
]]>

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