Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:48:23 (2227100): wrapper (7.7.26015): starting
06:48:23 (2227100): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 06:48:23] Arguments: --nthreads 4
[2026-02-20 06:48:23] Threads: 4
[2026-02-20 06:48:23] Checking for CVMFS
[2026-02-20 06:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 06:48:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 06:48:23] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 06:48:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 06:48:23] 2.9.2.0 1046581 7530 100316 156437 2 49 26954090 36864000 0 130560 0 3015474 99.985 257727 17179 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 06:48:23] CVMFS is ok
[2026-02-20 06:48:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 06:48:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 06:48:23] Further information can be found at the LHC@home message board.
[2026-02-20 06:48:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 06:48:23] Checking for apptainer binary...
[2026-02-20 06:48:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 06:48:23] Running /usr/bin/apptainer --version
[2026-02-20 06:48:23] apptainer version 1.4.1-1.1
[2026-02-20 06:48:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 06:48:23] thA309
[2026-02-20 06:48:23] apptainer works
[2026-02-20 06:48:23] Set ATHENA_PROC_NUMBER=4
[2026-02-20 06:48:23] Set ATHENA_CORE_NUMBER=4
[2026-02-20 06:48:23] Starting ATLAS job with PandaID=7021110806
[2026-02-20 06:48:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 08:35:49]  *** The last 200 lines of the pilot log: ***
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | job 7021110806 has completed (purged errors)
[2026-02-20 08:35:49] 2026-02-20 07:35:11,514 | INFO     | overall cleanup function is called
[2026-02-20 08:35:49] 2026-02-20 07:35:12,521 | INFO     | --- collectZombieJob: --- 10, [2235736]
[2026-02-20 08:35:49] 2026-02-20 07:35:12,521 | INFO     | zombie collector waiting for pid 2235736
[2026-02-20 08:35:49] 2026-02-20 07:35:12,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 08:35:49] 2026-02-20 07:35:12,521 | INFO     | collected zombie processes
[2026-02-20 08:35:49] 2026-02-20 07:35:12,521 | INFO     | will attempt to kill all subprocesses of pid=2235736
[2026-02-20 08:35:49] 2026-02-20 07:35:12,572 | INFO     | process IDs to be killed: [2235736] (in reverse order)
[2026-02-20 08:35:49] 2026-02-20 07:35:12,607 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 08:35:49] 2026-02-20 07:35:12,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 08:35:49] 2026-02-20 07:35:12,609 | INFO     | did not find any defunct processes belonging to 2235736
[2026-02-20 08:35:49] 2026-02-20 07:35:12,611 | INFO     | did not find any defunct processes belonging to 2235736
[2026-02-20 08:35:49] 2026-02-20 07:35:12,611 | INFO     | ready for new job
[2026-02-20 08:35:49] 2026-02-20 07:35:12,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 08:35:49] 2026-02-20 07:35:12,612 | INFO     | **************************************
[2026-02-20 08:35:49] 2026-02-20 07:35:12,612 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 08:35:49] 2026-02-20 07:35:12,612 | INFO     | **************************************
[2026-02-20 08:35:49] 2026-02-20 07:35:12,612 | INFO     | 
[2026-02-20 08:35:49] 2026-02-20 07:35:12,612 | INFO     | architecture information:
[2026-02-20 08:35:49] 2026-02-20 07:35:12,612 | INFO     | executing command: cat /etc/os-release
[2026-02-20 08:35:49] 2026-02-20 07:35:12,626 | INFO     | cat /etc/os-release:
[2026-02-20 08:35:49] NAME="CentOS Linux"
[2026-02-20 08:35:49] VERSION="7 (Core)"
[2026-02-20 08:35:49] ID="centos"
[2026-02-20 08:35:49] ID_LIKE="rhel fedora"
[2026-02-20 08:35:49] VERSION_ID="7"
[2026-02-20 08:35:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 08:35:49] ANSI_COLOR="0;31"
[2026-02-20 08:35:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 08:35:49] HOME_URL="https://www.centos.org/"
[2026-02-20 08:35:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 08:35:49] 
[2026-02-20 08:35:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 08:35:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 08:35:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 08:35:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 08:35:49] 
[2026-02-20 08:35:49] 2026-02-20 07:35:12,626 | INFO     | **************************************
[2026-02-20 08:35:49] 2026-02-20 07:35:13,130 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 08:35:49] 2026-02-20 07:35:13,148 | INFO     | sufficient remaining disk space (228587470848 B)
[2026-02-20 08:35:49] 2026-02-20 07:35:13,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 08:35:49] 2026-02-20 07:35:13,148 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 08:35:49] 2026-02-20 07:35:13,148 | INFO     | update_server=False
[2026-02-20 08:35:49] 2026-02-20 07:35:13,148 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 08:35:49] 2026-02-20 07:35:13,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 08:35:49] 2026-02-20 07:35:13,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 08:35:49] 2026-02-20 07:35:13,149 | INFO     | aborting loop
[2026-02-20 08:35:49] 2026-02-20 07:35:13,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 08:35:49] 2026-02-20 07:35:13,416 | INFO     | all data control threads have been joined
[2026-02-20 08:35:49] 2026-02-20 07:35:13,618 | INFO     | all job control threads have been joined
[2026-02-20 08:35:49] 2026-02-20 07:35:14,154 | INFO     | [job] queue monitor thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,154 | INFO     | [job] retrieve thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,155 | INFO     | [job] job monitor thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,161 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,422 | INFO     | [data] control thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,485 | INFO     | all payload control threads have been joined
[2026-02-20 08:35:49] 2026-02-20 07:35:14,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 08:35:49] 2026-02-20 07:35:14,597 | INFO     | [job] validate thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,600 | INFO     | [payload] validate_post thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,624 | INFO     | [job] control thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,732 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,881 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:14,999 | INFO     | [data] copytool_in thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:15,242 | INFO     | [data] copytool_out thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:15,491 | INFO     | [payload] control thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:15,634 | INFO     | [payload] failed_post thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:18,499 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:23,976 | INFO     | job.realtimelogging is not enabled
[2026-02-20 08:35:49] 2026-02-20 07:35:24,982 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 08:35:49] 2026-02-20 07:35:42,907 | INFO     | PID=2231235 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 08:35:49] 2026-02-20 07:35:42,907 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 08:35:49] 2026-02-20 07:35:42,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 08:35:49] 2026-02-20 07:35:42,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 08:35:49] 2026-02-20 07:35:43,620 | INFO     | [monitor] cgroup control has ended
[2026-02-20 08:35:49] 2026-02-20 07:35:43,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528825911104)>', '<ExcThread(monitor, started 140528008017664)>']
[2026-02-20 08:35:49] 2026-02-20 07:35:44,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 08:35:49] 2026-02-20 07:35:44,918 | INFO     | [monitor] control thread has ended
[2026-02-20 08:35:49] 2026-02-20 07:35:48,978 | INFO     | all workflow threads have been joined
[2026-02-20 08:35:49] 2026-02-20 07:35:48,978 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 08:35:49] 2026-02-20 07:35:48,978 | INFO     | traces error code: 0
[2026-02-20 08:35:49] 2026-02-20 07:35:48,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 08:35:49] 2026-02-20 07:35:49,061 [wrapper] ==== pilot stdout END ====
[2026-02-20 08:35:49] 2026-02-20 07:35:49,065 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 08:35:49] 2026-02-20 07:35:49,069 [wrapper] pilotpid: 2231235
[2026-02-20 08:35:49] 2026-02-20 07:35:49,072 [wrapper] Pilot exit status: 0
[2026-02-20 08:35:49] 2026-02-20 07:35:49,084 [wrapper] pandaids: 7021110806
[2026-02-20 08:35:49] 2026-02-20 07:35:49,108 [wrapper] cleanup supervisor_pilot 2242208 2231236
[2026-02-20 08:35:49] 2026-02-20 07:35:49,112 [wrapper] Test setup, not cleaning
[2026-02-20 08:35:49] 2026-02-20 07:35:49,117 [wrapper] apfmon messages muted
[2026-02-20 08:35:49] 2026-02-20 07:35:49,121 [wrapper] ==== wrapper stdout END ====
[2026-02-20 08:35:49] 2026-02-20 07:35:49,125 [wrapper] ==== wrapper stderr END ====
[2026-02-20 08:35:49]  *** Error codes and diagnostics ***
[2026-02-20 08:35:49]     "exeErrorCode": 0,
[2026-02-20 08:35:49]     "exeErrorDiag": "",
[2026-02-20 08:35:49]     "pilotErrorCode": 0,
[2026-02-20 08:35:49]     "pilotErrorDiag": "",
[2026-02-20 08:35:49]  *** Listing of results directory ***
[2026-02-20 08:35:49] total 949824
[2026-02-20 08:35:49] -rwx------ 1 boinc boinc     36322 Feb 19 11:27 runpilot2-wrapper.sh
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc    584627 Feb 19 11:29 pilot3.tar.gz
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc      5111 Feb 19 11:30 queuedata.json
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc       100 Feb 20 06:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 08:35:49] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 06:48 run_atlas
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc       105 Feb 20 06:48 job.xml
[2026-02-20 08:35:49] -rw-r--r-- 2 boinc boinc 683748359 Feb 20 06:48 EVNT.48508760._000836.pool.root.1
[2026-02-20 08:35:49] -rw-r--r-- 2 boinc boinc    597957 Feb 20 06:48 input.tar.gz
[2026-02-20 08:35:49] -rw-r--r-- 2 boinc boinc     15845 Feb 20 06:48 start_atlas.sh
[2026-02-20 08:35:49] drwxrwx--x 2 boinc boinc      4096 Feb 20 06:48 shared
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc         0 Feb 20 06:48 boinc_setup_complete
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc      6377 Feb 20 06:48 init_data.xml
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc         0 Feb 20 06:48 boinc_lockfile
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc      2553 Feb 20 06:48 pandaJob.out
[2026-02-20 08:35:49] -rw------- 1 boinc boinc   1001567 Feb 20 06:48 agis_schedconf.cvmfs.json
[2026-02-20 08:35:49] -rw------- 1 boinc boinc   1513015 Feb 20 06:48 agis_ddmendpoints.agis.ALL.json
[2026-02-20 08:35:49] -rw------- 1 boinc boinc       427 Feb 20 06:48 workernode_map.json
[2026-02-20 08:35:49] drwx------ 5 boinc boinc      4096 Feb 20 06:48 pilot3
[2026-02-20 08:35:49] -rw------- 1 boinc boinc 282457607 Feb 20 08:34 HITS.48508763._043567.pool.root.1
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc       530 Feb 20 08:34 boinc_task_state.xml
[2026-02-20 08:35:49] -rw------- 1 boinc boinc      1022 Feb 20 08:35 memory_monitor_summary.json
[2026-02-20 08:35:49] -rw------- 1 boinc boinc    321080 Feb 20 08:35 log.48508763._043567.job.log.tgz.1
[2026-02-20 08:35:49] -rw------- 1 boinc boinc        95 Feb 20 08:35 pilot_heartbeat.json
[2026-02-20 08:35:49] -rw------- 1 boinc boinc      6319 Feb 20 08:35 heartbeat.json
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc      8192 Feb 20 08:35 boinc_mmap_file
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc        27 Feb 20 08:35 wrapper_checkpoint.txt
[2026-02-20 08:35:49] -rw------- 1 boinc boinc      4820 Feb 20 08:35 pilotlog.txt
[2026-02-20 08:35:49] -rw------- 1 boinc boinc    924072 Feb 20 08:35 log.48508763._043567.job.log.1
[2026-02-20 08:35:49] -rw------- 1 boinc boinc       357 Feb 20 08:35 output.list
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc       620 Feb 20 08:35 runtime_log
[2026-02-20 08:35:49] -rw------- 1 boinc boinc   1259520 Feb 20 08:35 result.tar.gz
[2026-02-20 08:35:49] -rw------- 1 boinc boinc       657 Feb 20 08:35 sP8KDmnQGD9n9Rq4apOajLDm4fhM0noT9bVooX4SDm7MwKDmQ3KEXn.diag
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc      8896 Feb 20 08:35 runtime_log.err
[2026-02-20 08:35:49] -rw-r--r-- 1 boinc boinc     12735 Feb 20 08:35 stderr.txt
[2026-02-20 08:35:49] HITS file was successfully produced:
[2026-02-20 08:35:49] -rw------- 1 boinc boinc 282457607 Feb 20 08:34 shared/HITS.pool.root.1
[2026-02-20 08:35:49]  *** Contents of shared directory: ***
[2026-02-20 08:35:49] total 945404
[2026-02-20 08:35:49] -rw-r--r-- 2 boinc boinc 683748359 Feb 20 06:48 ATLAS.root_0
[2026-02-20 08:35:49] -rw-r--r-- 2 boinc boinc    597957 Feb 20 06:48 input.tar.gz
[2026-02-20 08:35:49] -rw-r--r-- 2 boinc boinc     15845 Feb 20 06:48 start_atlas.sh
[2026-02-20 08:35:49] -rw------- 1 boinc boinc 282457607 Feb 20 08:34 HITS.pool.root.1
[2026-02-20 08:35:49] -rw------- 1 boinc boinc   1259520 Feb 20 08:35 result.tar.gz
08:35:50 (2227100): run_atlas exited; CPU time 24431.087503
08:35:50 (2227100): called boinc_finish(0)

</stderr_txt>
]]>

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