Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:43:14 (3413361): wrapper (7.7.26015): starting
11:43:14 (3413361): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 11:43:14] Arguments: --nthreads 4
[2026-02-20 11:43:14] Threads: 4
[2026-02-20 11:43:14] Checking for CVMFS
[2026-02-20 11:43:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 11:43:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 11:43:14] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 11:43:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 11:43:14] 2.9.2.0 532808 7961 99740 156444 3 50 33402335 36864001 0 130560 0 3138242 99.984 269860 13411 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 11:43:14] CVMFS is ok
[2026-02-20 11:43:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 11:43:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 11:43:14] Further information can be found at the LHC@home message board.
[2026-02-20 11:43:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 11:43:14] Checking for apptainer binary...
[2026-02-20 11:43:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 11:43:14] Running /usr/bin/apptainer --version
[2026-02-20 11:43:14] apptainer version 1.4.1-1.1
[2026-02-20 11:43:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 11:43:14] atlasA237
[2026-02-20 11:43:14] apptainer works
[2026-02-20 11:43:14] Set ATHENA_PROC_NUMBER=4
[2026-02-20 11:43:14] Set ATHENA_CORE_NUMBER=4
[2026-02-20 11:43:14] Starting ATLAS job with PandaID=7021112043
[2026-02-20 11:43:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 13:35:07]  *** The last 200 lines of the pilot log: ***
[2026-02-20 13:35:07] 2026-02-20 12:34:36,374 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 13:35:07] 2026-02-20 12:34:36,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 13:35:07] 2026-02-20 12:34:36,384 | INFO     | did not find any defunct processes belonging to 3422163
[2026-02-20 13:35:07] 2026-02-20 12:34:36,394 | INFO     | did not find any defunct processes belonging to 3422163
[2026-02-20 13:35:07] 2026-02-20 12:34:36,394 | INFO     | ready for new job
[2026-02-20 13:35:07] 2026-02-20 12:34:36,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 13:35:07] 2026-02-20 12:34:36,395 | INFO     | **************************************
[2026-02-20 13:35:07] 2026-02-20 12:34:36,395 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 13:35:07] 2026-02-20 12:34:36,395 | INFO     | **************************************
[2026-02-20 13:35:07] 2026-02-20 12:34:36,395 | INFO     | 
[2026-02-20 13:35:07] 2026-02-20 12:34:36,395 | INFO     | architecture information:
[2026-02-20 13:35:07] 2026-02-20 12:34:36,396 | INFO     | executing command: cat /etc/os-release
[2026-02-20 13:35:07] 2026-02-20 12:34:36,409 | INFO     | cat /etc/os-release:
[2026-02-20 13:35:07] NAME="CentOS Linux"
[2026-02-20 13:35:07] VERSION="7 (Core)"
[2026-02-20 13:35:07] ID="centos"
[2026-02-20 13:35:07] ID_LIKE="rhel fedora"
[2026-02-20 13:35:07] VERSION_ID="7"
[2026-02-20 13:35:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 13:35:07] ANSI_COLOR="0;31"
[2026-02-20 13:35:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 13:35:07] HOME_URL="https://www.centos.org/"
[2026-02-20 13:35:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 13:35:07] 
[2026-02-20 13:35:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 13:35:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 13:35:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 13:35:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 13:35:07] 
[2026-02-20 13:35:07] 2026-02-20 12:34:36,410 | INFO     | **************************************
[2026-02-20 13:35:07] 2026-02-20 12:34:36,442 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 13:35:07] 2026-02-20 12:34:36,508 | INFO     | number of running child processes to parent process 3422163: 1
[2026-02-20 13:35:07] 2026-02-20 12:34:36,508 | INFO     | maximum number of monitored processes: 6
[2026-02-20 13:35:07] 2026-02-20 12:34:36,508 | INFO     | aborting job monitoring since job object (job id=7021112043) has expired
[2026-02-20 13:35:07] 2026-02-20 12:34:36,913 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 13:35:07] 2026-02-20 12:34:36,930 | INFO     | sufficient remaining disk space (321416855552 B)
[2026-02-20 13:35:07] 2026-02-20 12:34:36,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 13:35:07] 2026-02-20 12:34:36,930 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 13:35:07] 2026-02-20 12:34:36,930 | INFO     | update_server=False
[2026-02-20 13:35:07] 2026-02-20 12:34:36,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 13:35:07] 2026-02-20 12:34:36,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 13:35:07] 2026-02-20 12:34:36,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 13:35:07] 2026-02-20 12:34:36,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 13:35:07] 2026-02-20 12:34:36,931 | INFO     | will abort loop
[2026-02-20 13:35:07] 2026-02-20 12:34:37,115 | INFO     | all payload control threads have been joined
[2026-02-20 13:35:07] 2026-02-20 12:34:37,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 13:35:07] 2026-02-20 12:34:37,187 | INFO     | all job control threads have been joined
[2026-02-20 13:35:07] 2026-02-20 12:34:37,376 | INFO     | all data control threads have been joined
[2026-02-20 13:35:07] 2026-02-20 12:34:37,734 | INFO     | [monitor] cgroup control has ended
[2026-02-20 13:35:07] 2026-02-20 12:34:37,935 | INFO     | [job] job monitor thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:37,936 | INFO     | [job] retrieve thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:37,936 | INFO     | [job] queue monitor thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:38,078 | INFO     | [payload] validate_post thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:38,119 | INFO     | [payload] control thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:38,192 | INFO     | [job] control thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:38,381 | INFO     | [data] control thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:38,584 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:38,715 | INFO     | [job] validate thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:38,927 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:39,008 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:39,080 | INFO     | [payload] failed_post thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:39,135 | INFO     | [data] copytool_in thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:39,142 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:39,168 | INFO     | [data] copytool_out thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:40,937 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 13:35:07] 2026-02-20 12:34:42,501 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140363873843008)>', '<ExcThread(monitor, started 140363507406592)>']
[2026-02-20 13:35:07] 2026-02-20 12:34:47,526 | INFO     | all workflow threads have been joined
[2026-02-20 13:35:07] 2026-02-20 12:34:47,526 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 13:35:07] 2026-02-20 12:34:47,526 | INFO     | traces error code: 0
[2026-02-20 13:35:07] 2026-02-20 12:34:47,526 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 13:35:07] 2026-02-20 12:35:07,568 | INFO     | PID=3417521 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 13:35:07] 2026-02-20 12:35:07,568 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 13:35:07] 2026-02-20 12:35:07,568 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 13:35:07] 2026-02-20 12:35:07,568 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 13:35:07] 2026-02-20 12:35:07,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 13:35:07] 2026-02-20 12:35:07,569 | INFO     | [monitor] control thread has ended
[2026-02-20 13:35:07] 2026-02-20 12:35:07,638 [wrapper] ==== pilot stdout END ====
[2026-02-20 13:35:07] 2026-02-20 12:35:07,642 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 13:35:07] 2026-02-20 12:35:07,646 [wrapper] pilotpid: 3417521
[2026-02-20 13:35:07] 2026-02-20 12:35:07,649 [wrapper] Pilot exit status: 0
[2026-02-20 13:35:07] 2026-02-20 12:35:07,660 [wrapper] pandaids: 7021112043
[2026-02-20 13:35:07] 2026-02-20 12:35:07,687 [wrapper] cleanup supervisor_pilot 3491453 3417522
[2026-02-20 13:35:07] 2026-02-20 12:35:07,691 [wrapper] Test setup, not cleaning
[2026-02-20 13:35:07] 2026-02-20 12:35:07,695 [wrapper] apfmon messages muted
[2026-02-20 13:35:07] 2026-02-20 12:35:07,699 [wrapper] ==== wrapper stdout END ====
[2026-02-20 13:35:07] 2026-02-20 12:35:07,703 [wrapper] ==== wrapper stderr END ====
[2026-02-20 13:35:07]  *** Error codes and diagnostics ***
[2026-02-20 13:35:07]     "exeErrorCode": 0,
[2026-02-20 13:35:07]     "exeErrorDiag": "",
[2026-02-20 13:35:07]     "pilotErrorCode": 0,
[2026-02-20 13:35:07]     "pilotErrorDiag": "",
[2026-02-20 13:35:07]  *** Listing of results directory ***
[2026-02-20 13:35:07] total 948156
[2026-02-20 13:35:07] -rwx------ 1 boinc boinc     36322 Feb 19 11:27 runpilot2-wrapper.sh
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc    584627 Feb 19 11:29 pilot3.tar.gz
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc      5111 Feb 19 11:30 queuedata.json
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc       100 Feb 20 11:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 13:35:07] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 11:43 run_atlas
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc       105 Feb 20 11:43 job.xml
[2026-02-20 13:35:07] -rw-r--r-- 2 boinc boinc 675896593 Feb 20 11:43 EVNT.48508760._000849.pool.root.1
[2026-02-20 13:35:07] drwxrwx--x 2 boinc boinc      4096 Feb 20 11:43 shared
[2026-02-20 13:35:07] -rw-r--r-- 2 boinc boinc    597963 Feb 20 11:43 input.tar.gz
[2026-02-20 13:35:07] -rw-r--r-- 2 boinc boinc     15845 Feb 20 11:43 start_atlas.sh
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc         0 Feb 20 11:43 boinc_setup_complete
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc      6371 Feb 20 11:43 init_data.xml
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc         0 Feb 20 11:43 boinc_lockfile
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc      2553 Feb 20 11:43 pandaJob.out
[2026-02-20 13:35:07] -rw------- 1 boinc boinc   1001559 Feb 20 11:43 agis_schedconf.cvmfs.json
[2026-02-20 13:35:07] -rw------- 1 boinc boinc   1513015 Feb 20 11:43 agis_ddmendpoints.agis.ALL.json
[2026-02-20 13:35:07] -rw------- 1 boinc boinc       430 Feb 20 11:43 workernode_map.json
[2026-02-20 13:35:07] drwx------ 5 boinc boinc      4096 Feb 20 11:43 pilot3
[2026-02-20 13:35:07] -rw------- 1 boinc boinc 288526728 Feb 20 13:34 HITS.48508763._044215.pool.root.1
[2026-02-20 13:35:07] -rw------- 1 boinc boinc        95 Feb 20 13:34 pilot_heartbeat.json
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc       530 Feb 20 13:34 boinc_task_state.xml
[2026-02-20 13:35:07] -rw------- 1 boinc boinc      1028 Feb 20 13:34 memory_monitor_summary.json
[2026-02-20 13:35:07] -rw------- 1 boinc boinc    324475 Feb 20 13:34 log.48508763._044215.job.log.tgz.1
[2026-02-20 13:35:07] -rw------- 1 boinc boinc      6336 Feb 20 13:34 heartbeat.json
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc      8192 Feb 20 13:34 boinc_mmap_file
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc        27 Feb 20 13:34 wrapper_checkpoint.txt
[2026-02-20 13:35:07] -rw------- 1 boinc boinc       747 Feb 20 13:35 pilotlog.txt
[2026-02-20 13:35:07] -rw------- 1 boinc boinc    958705 Feb 20 13:35 log.48508763._044215.job.log.1
[2026-02-20 13:35:07] -rw------- 1 boinc boinc       357 Feb 20 13:35 output.list
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc       620 Feb 20 13:35 runtime_log
[2026-02-20 13:35:07] -rw------- 1 boinc boinc   1300480 Feb 20 13:35 result.tar.gz
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc      8911 Feb 20 13:35 runtime_log.err
[2026-02-20 13:35:07] -rw------- 1 boinc boinc       661 Feb 20 13:35 kFmLDm3QGD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhpxKDmcVdhNm.diag
[2026-02-20 13:35:07] -rw-r--r-- 1 boinc boinc     10467 Feb 20 13:35 stderr.txt
[2026-02-20 13:35:07] HITS file was successfully produced:
[2026-02-20 13:35:07] -rw------- 1 boinc boinc 288526728 Feb 20 13:34 shared/HITS.pool.root.1
[2026-02-20 13:35:07]  *** Contents of shared directory: ***
[2026-02-20 13:35:07] total 943704
[2026-02-20 13:35:07] -rw-r--r-- 2 boinc boinc 675896593 Feb 20 11:43 ATLAS.root_0
[2026-02-20 13:35:07] -rw-r--r-- 2 boinc boinc    597963 Feb 20 11:43 input.tar.gz
[2026-02-20 13:35:07] -rw-r--r-- 2 boinc boinc     15845 Feb 20 11:43 start_atlas.sh
[2026-02-20 13:35:07] -rw------- 1 boinc boinc 288526728 Feb 20 13:34 HITS.pool.root.1
[2026-02-20 13:35:07] -rw------- 1 boinc boinc   1300480 Feb 20 13:35 result.tar.gz
13:35:08 (3413361): run_atlas exited; CPU time 25522.387982
13:35:08 (3413361): called boinc_finish(0)

</stderr_txt>
]]>

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