Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:49:59 (2018772): wrapper (7.7.26015): starting
13:49:59 (2018772): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 13:49:59] Arguments: --nthreads 4
[2026-02-20 13:49:59] Threads: 4
[2026-02-20 13:49:59] Checking for CVMFS
[2026-02-20 13:49:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 13:50:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 13:50:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 13:50:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 13:50:00] 2.9.2.0 723037 7888 100428 156448 2 50 19916602 36864000 0 130560 0 3678110 99.987 271690 10340 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 13:50:00] CVMFS is ok
[2026-02-20 13:50:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 13:50:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 13:50:00] Further information can be found at the LHC@home message board.
[2026-02-20 13:50:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 13:50:00] Checking for apptainer binary...
[2026-02-20 13:50:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 13:50:00] Running /usr/bin/apptainer --version
[2026-02-20 13:50:00] apptainer version 1.4.1-1.1
[2026-02-20 13:50:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 13:50:00] thA315b
[2026-02-20 13:50:00] apptainer works
[2026-02-20 13:50:00] Set ATHENA_PROC_NUMBER=4
[2026-02-20 13:50:00] Set ATHENA_CORE_NUMBER=4
[2026-02-20 13:50:00] Starting ATLAS job with PandaID=7021127377
[2026-02-20 13:50:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 15:20:36]  *** The last 200 lines of the pilot log: ***
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | job 7021127377 has completed (purged errors)
[2026-02-20 15:20:36] 2026-02-20 14:20:03,909 | INFO     | overall cleanup function is called
[2026-02-20 15:20:36] 2026-02-20 14:20:04,916 | INFO     | --- collectZombieJob: --- 10, [2027393]
[2026-02-20 15:20:36] 2026-02-20 14:20:04,916 | INFO     | zombie collector waiting for pid 2027393
[2026-02-20 15:20:36] 2026-02-20 14:20:04,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 15:20:36] 2026-02-20 14:20:04,916 | INFO     | collected zombie processes
[2026-02-20 15:20:36] 2026-02-20 14:20:04,916 | INFO     | will attempt to kill all subprocesses of pid=2027393
[2026-02-20 15:20:36] 2026-02-20 14:20:04,961 | INFO     | process IDs to be killed: [2027393] (in reverse order)
[2026-02-20 15:20:36] 2026-02-20 14:20:04,988 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 15:20:36] 2026-02-20 14:20:04,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 15:20:36] 2026-02-20 14:20:04,990 | INFO     | did not find any defunct processes belonging to 2027393
[2026-02-20 15:20:36] 2026-02-20 14:20:04,991 | INFO     | did not find any defunct processes belonging to 2027393
[2026-02-20 15:20:36] 2026-02-20 14:20:04,991 | INFO     | ready for new job
[2026-02-20 15:20:36] 2026-02-20 14:20:04,991 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 15:20:36] 2026-02-20 14:20:04,992 | INFO     | **************************************
[2026-02-20 15:20:36] 2026-02-20 14:20:04,992 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 15:20:36] 2026-02-20 14:20:04,992 | INFO     | **************************************
[2026-02-20 15:20:36] 2026-02-20 14:20:04,992 | INFO     | 
[2026-02-20 15:20:36] 2026-02-20 14:20:04,992 | INFO     | architecture information:
[2026-02-20 15:20:36] 2026-02-20 14:20:04,992 | INFO     | executing command: cat /etc/os-release
[2026-02-20 15:20:36] 2026-02-20 14:20:05,002 | INFO     | cat /etc/os-release:
[2026-02-20 15:20:36] NAME="CentOS Linux"
[2026-02-20 15:20:36] VERSION="7 (Core)"
[2026-02-20 15:20:36] ID="centos"
[2026-02-20 15:20:36] ID_LIKE="rhel fedora"
[2026-02-20 15:20:36] VERSION_ID="7"
[2026-02-20 15:20:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 15:20:36] ANSI_COLOR="0;31"
[2026-02-20 15:20:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 15:20:36] HOME_URL="https://www.centos.org/"
[2026-02-20 15:20:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 15:20:36] 
[2026-02-20 15:20:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 15:20:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 15:20:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 15:20:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 15:20:36] 
[2026-02-20 15:20:36] 2026-02-20 14:20:05,002 | INFO     | **************************************
[2026-02-20 15:20:36] 2026-02-20 14:20:05,505 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 15:20:36] 2026-02-20 14:20:05,519 | INFO     | sufficient remaining disk space (337487331328 B)
[2026-02-20 15:20:36] 2026-02-20 14:20:05,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 15:20:36] 2026-02-20 14:20:05,519 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 15:20:36] 2026-02-20 14:20:05,519 | INFO     | update_server=False
[2026-02-20 15:20:36] 2026-02-20 14:20:05,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 15:20:36] 2026-02-20 14:20:05,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 15:20:36] 2026-02-20 14:20:05,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 15:20:36] 2026-02-20 14:20:05,627 | INFO     | all data control threads have been joined
[2026-02-20 15:20:36] 2026-02-20 14:20:05,722 | WARNING  | process 2027393 can no longer be monitored (due to stat problems) - aborting
[2026-02-20 15:20:36] 2026-02-20 14:20:05,753 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 15:20:36] 2026-02-20 14:20:05,792 | INFO     | number of running child processes to parent process 2027393: 1
[2026-02-20 15:20:36] 2026-02-20 14:20:05,792 | INFO     | maximum number of monitored processes: 6
[2026-02-20 15:20:36] 2026-02-20 14:20:05,792 | INFO     | aborting job monitoring since job object (job id=7021127377) has expired
[2026-02-20 15:20:36] 2026-02-20 14:20:05,792 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 15:20:36] 2026-02-20 14:20:05,792 | INFO     | will abort loop
[2026-02-20 15:20:36] 2026-02-20 14:20:05,892 | INFO     | all payload control threads have been joined
[2026-02-20 15:20:36] 2026-02-20 14:20:05,952 | INFO     | all job control threads have been joined
[2026-02-20 15:20:36] 2026-02-20 14:20:06,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 15:20:36] 2026-02-20 14:20:06,525 | INFO     | [job] retrieve thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:06,525 | INFO     | [job] queue monitor thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:06,549 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-02-20 15:20:36] 2026-02-20 14:20:06,633 | INFO     | [data] control thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:06,798 | INFO     | [job] job monitor thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:06,871 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:06,898 | INFO     | [payload] control thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:06,958 | INFO     | [job] control thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:07,097 | INFO     | [payload] validate_post thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:07,162 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:07,282 | INFO     | [payload] failed_post thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:07,591 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:07,591 | INFO     | [job] validate thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:07,731 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:07,823 | INFO     | [data] copytool_in thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:08,254 | INFO     | [data] copytool_out thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:09,526 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 15:20:36] 2026-02-20 14:20:18,178 | INFO     | [monitor] cgroup control has ended
[2026-02-20 15:20:36] 2026-02-20 14:20:19,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140097589798720)>', '<ExcThread(monitor, started 140096649025280)>']
[2026-02-20 15:20:36] 2026-02-20 14:20:24,640 | INFO     | all workflow threads have been joined
[2026-02-20 15:20:36] 2026-02-20 14:20:24,640 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 15:20:36] 2026-02-20 14:20:24,640 | INFO     | traces error code: 0
[2026-02-20 15:20:36] 2026-02-20 14:20:24,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 15:20:36] 2026-02-20 14:20:36,569 | INFO     | PID=2022886 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 15:20:36] 2026-02-20 14:20:36,569 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 15:20:36] 2026-02-20 14:20:36,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 15:20:36] 2026-02-20 14:20:36,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 15:20:36] 2026-02-20 14:20:36,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 15:20:36] 2026-02-20 14:20:36,570 | INFO     | [monitor] control thread has ended
[2026-02-20 15:20:36] 2026-02-20 14:20:36,620 [wrapper] ==== pilot stdout END ====
[2026-02-20 15:20:36] 2026-02-20 14:20:36,623 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 15:20:36] 2026-02-20 14:20:36,625 [wrapper] pilotpid: 2022886
[2026-02-20 15:20:36] 2026-02-20 14:20:36,628 [wrapper] Pilot exit status: 0
[2026-02-20 15:20:36] 2026-02-20 14:20:36,635 [wrapper] pandaids: 7021127377
[2026-02-20 15:20:36] 2026-02-20 14:20:36,654 [wrapper] cleanup supervisor_pilot 2033036 2022887
[2026-02-20 15:20:36] 2026-02-20 14:20:36,656 [wrapper] Test setup, not cleaning
[2026-02-20 15:20:36] 2026-02-20 14:20:36,659 [wrapper] apfmon messages muted
[2026-02-20 15:20:36] 2026-02-20 14:20:36,661 [wrapper] ==== wrapper stdout END ====
[2026-02-20 15:20:36] 2026-02-20 14:20:36,664 [wrapper] ==== wrapper stderr END ====
[2026-02-20 15:20:36]  *** Error codes and diagnostics ***
[2026-02-20 15:20:36]     "exeErrorCode": 0,
[2026-02-20 15:20:36]     "exeErrorDiag": "",
[2026-02-20 15:20:36]     "pilotErrorCode": 0,
[2026-02-20 15:20:36]     "pilotErrorDiag": "",
[2026-02-20 15:20:36]  *** Listing of results directory ***
[2026-02-20 15:20:36] total 936292
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc    584627 Feb 19 18:01 pilot3.tar.gz
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc      5111 Feb 19 18:01 queuedata.json
[2026-02-20 15:20:36] -rwx------ 1 boinc boinc     36322 Feb 19 18:03 runpilot2-wrapper.sh
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc       100 Feb 20 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 15:20:36] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 13:49 run_atlas
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc       105 Feb 20 13:49 job.xml
[2026-02-20 15:20:36] -rw-r--r-- 2 boinc boinc 674754626 Feb 20 13:49 EVNT.48508760._000963.pool.root.1
[2026-02-20 15:20:36] -rw-r--r-- 2 boinc boinc    597948 Feb 20 13:49 input.tar.gz
[2026-02-20 15:20:36] -rw-r--r-- 2 boinc boinc     15845 Feb 20 13:49 start_atlas.sh
[2026-02-20 15:20:36] drwxrwx--x 2 boinc boinc      4096 Feb 20 13:49 shared
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc         0 Feb 20 13:49 boinc_setup_complete
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc      6443 Feb 20 13:49 init_data.xml
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc         0 Feb 20 13:49 boinc_lockfile
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc      2551 Feb 20 13:50 pandaJob.out
[2026-02-20 15:20:36] -rw------- 1 boinc boinc   1001572 Feb 20 13:50 agis_schedconf.cvmfs.json
[2026-02-20 15:20:36] -rw------- 1 boinc boinc   1513015 Feb 20 13:50 agis_ddmendpoints.agis.ALL.json
[2026-02-20 15:20:36] -rw------- 1 boinc boinc       424 Feb 20 13:50 workernode_map.json
[2026-02-20 15:20:36] drwx------ 5 boinc boinc      4096 Feb 20 13:50 pilot3
[2026-02-20 15:20:36] -rw------- 1 boinc boinc 277969807 Feb 20 15:19 HITS.48508763._049899.pool.root.1
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc       530 Feb 20 15:19 boinc_task_state.xml
[2026-02-20 15:20:36] -rw------- 1 boinc boinc      1017 Feb 20 15:19 memory_monitor_summary.json
[2026-02-20 15:20:36] -rw------- 1 boinc boinc    274139 Feb 20 15:20 log.48508763._049899.job.log.tgz.1
[2026-02-20 15:20:36] -rw------- 1 boinc boinc      6301 Feb 20 15:20 heartbeat.json
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc      8192 Feb 20 15:20 boinc_mmap_file
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc        27 Feb 20 15:20 wrapper_checkpoint.txt
[2026-02-20 15:20:36] -rw------- 1 boinc boinc       747 Feb 20 15:20 pilotlog.txt
[2026-02-20 15:20:36] -rw------- 1 boinc boinc        95 Feb 20 15:20 pilot_heartbeat.json
[2026-02-20 15:20:36] -rw------- 1 boinc boinc    785307 Feb 20 15:20 log.48508763._049899.job.log.1
[2026-02-20 15:20:36] -rw------- 1 boinc boinc       357 Feb 20 15:20 output.list
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc       620 Feb 20 15:20 runtime_log
[2026-02-20 15:20:36] -rw------- 1 boinc boinc   1075200 Feb 20 15:20 result.tar.gz
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc      8901 Feb 20 15:20 runtime_log.err
[2026-02-20 15:20:36] -rw------- 1 boinc boinc       658 Feb 20 15:20 6lwKDmAcMD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwSyKDmo4mqPm.diag
[2026-02-20 15:20:36] -rw-r--r-- 1 boinc boinc     12352 Feb 20 15:20 stderr.txt
[2026-02-20 15:20:36] HITS file was successfully produced:
[2026-02-20 15:20:36] -rw------- 1 boinc boinc 277969807 Feb 20 15:19 shared/HITS.pool.root.1
[2026-02-20 15:20:36]  *** Contents of shared directory: ***
[2026-02-20 15:20:36] total 932060
[2026-02-20 15:20:36] -rw-r--r-- 2 boinc boinc 674754626 Feb 20 13:49 ATLAS.root_0
[2026-02-20 15:20:36] -rw-r--r-- 2 boinc boinc    597948 Feb 20 13:49 input.tar.gz
[2026-02-20 15:20:36] -rw-r--r-- 2 boinc boinc     15845 Feb 20 13:49 start_atlas.sh
[2026-02-20 15:20:36] -rw------- 1 boinc boinc 277969807 Feb 20 15:19 HITS.pool.root.1
[2026-02-20 15:20:36] -rw------- 1 boinc boinc   1075200 Feb 20 15:20 result.tar.gz
15:20:38 (2018772): run_atlas exited; CPU time 20517.492729
15:20:38 (2018772): called boinc_finish(0)

</stderr_txt>
]]>

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