Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:46:41 (4103233): wrapper (7.7.26015): starting
09:46:41 (4103233): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 09:46:41] Arguments: --nthreads 4
[2026-02-20 09:46:41] Threads: 4
[2026-02-20 09:46:41] Checking for CVMFS
[2026-02-20 09:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 09:46:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 09:46:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 09:46:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 09:46:42] 2.9.2.0 2911421 7811 103116 156441 1 50 28501471 36864001 0 130560 0 3328466 99.986 268824 9895 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 09:46:42] CVMFS is ok
[2026-02-20 09:46:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 09:46:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 09:46:42] Further information can be found at the LHC@home message board.
[2026-02-20 09:46:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 09:46:42] Checking for apptainer binary...
[2026-02-20 09:46:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 09:46:42] Running /usr/bin/apptainer --version
[2026-02-20 09:46:42] apptainer version 1.4.1-1.1
[2026-02-20 09:46:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 09:46:42] thA314a
[2026-02-20 09:46:42] apptainer works
[2026-02-20 09:46:42] Set ATHENA_PROC_NUMBER=4
[2026-02-20 09:46:42] Set ATHENA_CORE_NUMBER=4
[2026-02-20 09:46:42] Starting ATLAS job with PandaID=7021121532
[2026-02-20 09:46:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 11:29:07]  *** The last 200 lines of the pilot log: ***
[2026-02-20 11:29:07] 2026-02-20 10:28:33,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 11:29:07] 2026-02-20 10:28:33,506 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 11:29:07] 2026-02-20 10:28:33,506 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 11:29:07] 2026-02-20 10:28:33,506 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 11:29:07] 2026-02-20 10:28:33,506 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 11:29:07] 2026-02-20 10:28:33,506 | INFO     | job 7021121532 has completed (purged errors)
[2026-02-20 11:29:07] 2026-02-20 10:28:33,506 | INFO     | overall cleanup function is called
[2026-02-20 11:29:07] 2026-02-20 10:28:34,513 | INFO     | --- collectZombieJob: --- 10, [4111866]
[2026-02-20 11:29:07] 2026-02-20 10:28:34,513 | INFO     | zombie collector waiting for pid 4111866
[2026-02-20 11:29:07] 2026-02-20 10:28:34,513 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 11:29:07] 2026-02-20 10:28:34,513 | INFO     | collected zombie processes
[2026-02-20 11:29:07] 2026-02-20 10:28:34,513 | INFO     | will attempt to kill all subprocesses of pid=4111866
[2026-02-20 11:29:07] 2026-02-20 10:28:34,554 | INFO     | process IDs to be killed: [4111866] (in reverse order)
[2026-02-20 11:29:07] 2026-02-20 10:28:34,585 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 11:29:07] 2026-02-20 10:28:34,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 11:29:07] 2026-02-20 10:28:34,587 | INFO     | did not find any defunct processes belonging to 4111866
[2026-02-20 11:29:07] 2026-02-20 10:28:34,588 | INFO     | did not find any defunct processes belonging to 4111866
[2026-02-20 11:29:07] 2026-02-20 10:28:34,588 | INFO     | ready for new job
[2026-02-20 11:29:07] 2026-02-20 10:28:34,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 11:29:07] 2026-02-20 10:28:34,589 | INFO     | **************************************
[2026-02-20 11:29:07] 2026-02-20 10:28:34,589 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 11:29:07] 2026-02-20 10:28:34,589 | INFO     | **************************************
[2026-02-20 11:29:07] 2026-02-20 10:28:34,589 | INFO     | 
[2026-02-20 11:29:07] 2026-02-20 10:28:34,589 | INFO     | architecture information:
[2026-02-20 11:29:07] 2026-02-20 10:28:34,589 | INFO     | executing command: cat /etc/os-release
[2026-02-20 11:29:07] 2026-02-20 10:28:34,602 | INFO     | cat /etc/os-release:
[2026-02-20 11:29:07] NAME="CentOS Linux"
[2026-02-20 11:29:07] VERSION="7 (Core)"
[2026-02-20 11:29:07] ID="centos"
[2026-02-20 11:29:07] ID_LIKE="rhel fedora"
[2026-02-20 11:29:07] VERSION_ID="7"
[2026-02-20 11:29:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 11:29:07] ANSI_COLOR="0;31"
[2026-02-20 11:29:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 11:29:07] HOME_URL="https://www.centos.org/"
[2026-02-20 11:29:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 11:29:07] 
[2026-02-20 11:29:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 11:29:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 11:29:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 11:29:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 11:29:07] 
[2026-02-20 11:29:07] 2026-02-20 10:28:34,602 | INFO     | **************************************
[2026-02-20 11:29:07] 2026-02-20 10:28:35,105 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 11:29:07] 2026-02-20 10:28:35,122 | INFO     | sufficient remaining disk space (226833203200 B)
[2026-02-20 11:29:07] 2026-02-20 10:28:35,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 11:29:07] 2026-02-20 10:28:35,123 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 11:29:07] 2026-02-20 10:28:35,123 | INFO     | update_server=False
[2026-02-20 11:29:07] 2026-02-20 10:28:35,123 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 11:29:07] 2026-02-20 10:28:35,123 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 11:29:07] 2026-02-20 10:28:35,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 11:29:07] 2026-02-20 10:28:35,188 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-20 11:29:07] 2026-02-20 10:28:35,188 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-20 11:29:07] 2026-02-20 10:28:35,188 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 11:29:07] 2026-02-20 10:28:35,188 | INFO     | will abort loop
[2026-02-20 11:29:07] 2026-02-20 10:28:35,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 11:29:07] 2026-02-20 10:28:35,341 | INFO     | all job control threads have been joined
[2026-02-20 11:29:07] 2026-02-20 10:28:35,904 | INFO     | all data control threads have been joined
[2026-02-20 11:29:07] 2026-02-20 10:28:36,128 | INFO     | [job] retrieve thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,129 | INFO     | [job] queue monitor thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,164 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,194 | INFO     | [job] job monitor thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,244 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,347 | INFO     | [job] control thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,355 | INFO     | [data] copytool_in thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,388 | INFO     | all payload control threads have been joined
[2026-02-20 11:29:07] 2026-02-20 10:28:36,410 | INFO     | [payload] failed_post thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,853 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:36,905 | INFO     | [data] control thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:37,182 | INFO     | [payload] validate_post thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:37,246 | INFO     | [data] copytool_out thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:37,394 | INFO     | [payload] control thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:37,476 | INFO     | [job] validate thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:39,130 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:28:46,057 | INFO     | job.realtimelogging is not enabled
[2026-02-20 11:29:07] 2026-02-20 10:28:47,063 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 11:29:07] 2026-02-20 10:29:01,338 | INFO     | [monitor] cgroup control has ended
[2026-02-20 11:29:07] 2026-02-20 10:29:02,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140332460504896)>', '<ExcThread(monitor, started 140331647481600)>']
[2026-02-20 11:29:07] 2026-02-20 10:29:05,415 | INFO     | PID=4107342 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 11:29:07] 2026-02-20 10:29:05,415 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 11:29:07] 2026-02-20 10:29:05,416 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 11:29:07] 2026-02-20 10:29:05,416 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 11:29:07] 2026-02-20 10:29:05,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 11:29:07] 2026-02-20 10:29:05,416 | INFO     | [monitor] control thread has ended
[2026-02-20 11:29:07] 2026-02-20 10:29:07,568 | INFO     | all workflow threads have been joined
[2026-02-20 11:29:07] 2026-02-20 10:29:07,568 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 11:29:07] 2026-02-20 10:29:07,568 | INFO     | traces error code: 0
[2026-02-20 11:29:07] 2026-02-20 10:29:07,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 11:29:07] 2026-02-20 10:29:07,637 [wrapper] ==== pilot stdout END ====
[2026-02-20 11:29:07] 2026-02-20 10:29:07,641 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 11:29:07] 2026-02-20 10:29:07,645 [wrapper] pilotpid: 4107342
[2026-02-20 11:29:07] 2026-02-20 10:29:07,649 [wrapper] Pilot exit status: 0
[2026-02-20 11:29:07] 2026-02-20 10:29:07,659 [wrapper] pandaids: 7021121532
[2026-02-20 11:29:07] 2026-02-20 10:29:07,679 [wrapper] cleanup supervisor_pilot 4117486 4107343
[2026-02-20 11:29:07] 2026-02-20 10:29:07,683 [wrapper] Test setup, not cleaning
[2026-02-20 11:29:07] 2026-02-20 10:29:07,687 [wrapper] apfmon messages muted
[2026-02-20 11:29:07] 2026-02-20 10:29:07,690 [wrapper] ==== wrapper stdout END ====
[2026-02-20 11:29:07] 2026-02-20 10:29:07,693 [wrapper] ==== wrapper stderr END ====
[2026-02-20 11:29:07]  *** Error codes and diagnostics ***
[2026-02-20 11:29:07]     "exeErrorCode": 0,
[2026-02-20 11:29:07]     "exeErrorDiag": "",
[2026-02-20 11:29:07]     "pilotErrorCode": 0,
[2026-02-20 11:29:07]     "pilotErrorDiag": "",
[2026-02-20 11:29:07]  *** Listing of results directory ***
[2026-02-20 11:29:07] total 942056
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc      5111 Feb 19 14:45 queuedata.json
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc    584627 Feb 19 14:45 pilot3.tar.gz
[2026-02-20 11:29:07] -rwx------ 1 boinc boinc     36322 Feb 19 14:46 runpilot2-wrapper.sh
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc       100 Feb 20 09:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 11:29:07] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 09:46 run_atlas
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc       105 Feb 20 09:46 job.xml
[2026-02-20 11:29:07] -rw-r--r-- 2 boinc boinc 676060593 Feb 20 09:46 EVNT.48508760._000907.pool.root.1
[2026-02-20 11:29:07] -rw-r--r-- 2 boinc boinc    597956 Feb 20 09:46 input.tar.gz
[2026-02-20 11:29:07] -rw-r--r-- 2 boinc boinc     15845 Feb 20 09:46 start_atlas.sh
[2026-02-20 11:29:07] drwxrwx--x 2 boinc boinc      4096 Feb 20 09:46 shared
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc         0 Feb 20 09:46 boinc_setup_complete
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc      6371 Feb 20 09:46 init_data.xml
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc         0 Feb 20 09:46 boinc_lockfile
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc      2551 Feb 20 09:46 pandaJob.out
[2026-02-20 11:29:07] -rw------- 1 boinc boinc   1001567 Feb 20 09:46 agis_schedconf.cvmfs.json
[2026-02-20 11:29:07] -rw------- 1 boinc boinc   1513015 Feb 20 09:46 agis_ddmendpoints.agis.ALL.json
[2026-02-20 11:29:07] -rw------- 1 boinc boinc       428 Feb 20 09:46 workernode_map.json
[2026-02-20 11:29:07] drwx------ 5 boinc boinc      4096 Feb 20 09:46 pilot3
[2026-02-20 11:29:07] -rw------- 1 boinc boinc 282287435 Feb 20 11:28 HITS.48508763._047090.pool.root.1
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc       530 Feb 20 11:28 boinc_task_state.xml
[2026-02-20 11:29:07] -rw------- 1 boinc boinc        95 Feb 20 11:28 pilot_heartbeat.json
[2026-02-20 11:29:07] -rw------- 1 boinc boinc      1018 Feb 20 11:28 memory_monitor_summary.json
[2026-02-20 11:29:07] -rw------- 1 boinc boinc    281490 Feb 20 11:28 log.48508763._047090.job.log.tgz.1
[2026-02-20 11:29:07] -rw------- 1 boinc boinc      6318 Feb 20 11:28 heartbeat.json
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc      8192 Feb 20 11:28 boinc_mmap_file
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc        27 Feb 20 11:28 wrapper_checkpoint.txt
[2026-02-20 11:29:07] -rw------- 1 boinc boinc      5006 Feb 20 11:29 pilotlog.txt
[2026-02-20 11:29:07] -rw------- 1 boinc boinc    916764 Feb 20 11:29 log.48508763._047090.job.log.1
[2026-02-20 11:29:07] -rw------- 1 boinc boinc       357 Feb 20 11:29 output.list
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc       620 Feb 20 11:29 runtime_log
[2026-02-20 11:29:07] -rw------- 1 boinc boinc   1218560 Feb 20 11:29 result.tar.gz
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc      8901 Feb 20 11:29 runtime_log.err
[2026-02-20 11:29:07] -rw------- 1 boinc boinc       658 Feb 20 11:29 IUbMDmYXJD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDms4xKDmnx1J0n.diag
[2026-02-20 11:29:07] -rw-r--r-- 1 boinc boinc     11638 Feb 20 11:29 stderr.txt
[2026-02-20 11:29:07] HITS file was successfully produced:
[2026-02-20 11:29:07] -rw------- 1 boinc boinc 282287435 Feb 20 11:28 shared/HITS.pool.root.1
[2026-02-20 11:29:07]  *** Contents of shared directory: ***
[2026-02-20 11:29:07] total 937688
[2026-02-20 11:29:07] -rw-r--r-- 2 boinc boinc 676060593 Feb 20 09:46 ATLAS.root_0
[2026-02-20 11:29:07] -rw-r--r-- 2 boinc boinc    597956 Feb 20 09:46 input.tar.gz
[2026-02-20 11:29:07] -rw-r--r-- 2 boinc boinc     15845 Feb 20 09:46 start_atlas.sh
[2026-02-20 11:29:07] -rw------- 1 boinc boinc 282287435 Feb 20 11:28 HITS.pool.root.1
[2026-02-20 11:29:07] -rw------- 1 boinc boinc   1218560 Feb 20 11:29 result.tar.gz
11:29:09 (4103233): run_atlas exited; CPU time 23271.031563
11:29:09 (4103233): called boinc_finish(0)

</stderr_txt>
]]>

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