Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:00:46 (6433): wrapper (7.7.26015): starting
07:00:46 (6433): wrapper: running run_atlas (--nthreads 8)
[2026-02-20 07:00:46] Arguments: --nthreads 8
[2026-02-20 07:00:46] Threads: 8
[2026-02-20 07:00:46] Checking for CVMFS
[2026-02-20 07:00:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 07:00:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 07:00:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 07:00:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 07:00:47] 2.11.2.0 23922 95490 138516 156437 2 199 21718057 25165825 3509 130560 0 26796950 99.766 26270071 2554 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-20 07:00:47] CVMFS is ok
[2026-02-20 07:00:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 07:00:47] Checking for apptainer binary...
[2026-02-20 07:00:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 07:00:47] Running /usr/bin/apptainer --version
[2026-02-20 07:00:47] apptainer version 1.3.2-1.el7
[2026-02-20 07:00:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 07:00:48] cg-vwn468.simple-grid.lan
[2026-02-20 07:00:48] apptainer works
[2026-02-20 07:00:48] Set ATHENA_PROC_NUMBER=8
[2026-02-20 07:00:48] Set ATHENA_CORE_NUMBER=8
[2026-02-20 07:00:49] Starting ATLAS job with PandaID=7021114803
[2026-02-20 07:00:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 12:51:03]  *** The last 200 lines of the pilot log: ***
[2026-02-20 12:51:03] 2026-02-20 11:50:17,805 | INFO     | job 7021114803 has finished - writing final server update
[2026-02-20 12:51:03] 2026-02-20 11:50:17,805 | INFO     | total number of processed events: 400 (read)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,808 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7021114803/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,808 | INFO     | extracted standard info from prmon json
[2026-02-20 12:51:03] 2026-02-20 11:50:17,808 | INFO     | extracted standard memory fields from prmon json
[2026-02-20 12:51:03] 2026-02-20 11:50:17,808 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-20 12:51:03] 2026-02-20 11:50:17,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-20 12:51:03] 2026-02-20 11:50:17,809 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-20 12:51:03] 2026-02-20 11:50:17,816 | INFO     | fitting pss+swap vs Time
[2026-02-20 12:51:03] 2026-02-20 11:50:17,816 | INFO     | sum of square deviations: 12512874978.997065
[2026-02-20 12:51:03] 2026-02-20 11:50:17,820 | INFO     | sum of deviations: 55925904144.50729
[2026-02-20 12:51:03] 2026-02-20 11:50:17,820 | INFO     | mean x: 1771577745.0029154
[2026-02-20 12:51:03] 2026-02-20 11:50:17,820 | INFO     | mean y: 2544967.4927113703
[2026-02-20 12:51:03] 2026-02-20 11:50:17,820 | INFO     | intersect: -7915466466.160778
[2026-02-20 12:51:03] 2026-02-20 11:50:17,825 | INFO     | chi2: 2.291615345130656
[2026-02-20 12:51:03] 2026-02-20 11:50:17,826 | INFO     | sum of square deviations: 11973600056.496998
[2026-02-20 12:51:03] 2026-02-20 11:50:17,829 | INFO     | sum of deviations: 78222614196.5444
[2026-02-20 12:51:03] 2026-02-20 11:50:17,829 | INFO     | mean x: 1771577592.5029585
[2026-02-20 12:51:03] 2026-02-20 11:50:17,830 | INFO     | mean y: 2551194.4556213017
[2026-02-20 12:51:03] 2026-02-20 11:50:17,830 | INFO     | intersect: -11571029840.799381
[2026-02-20 12:51:03] 2026-02-20 11:50:17,830 | INFO     | chi2: 1.5149151651140111
[2026-02-20 12:51:03] 2026-02-20 11:50:17,830 | INFO     | current chi2=1.5149151651140111 (change=33.893130523279915 %)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,831 | INFO     | sum of square deviations: 11450046358.996914
[2026-02-20 12:51:03] 2026-02-20 11:50:17,834 | INFO     | sum of deviations: 76729315660.54047
[2026-02-20 12:51:03] 2026-02-20 11:50:17,834 | INFO     | mean x: 1771577440.0030031
[2026-02-20 12:51:03] 2026-02-20 11:50:17,835 | INFO     | mean y: 2550759.4594594594
[2026-02-20 12:51:03] 2026-02-20 11:50:17,835 | INFO     | intersect: -11869184982.839403
[2026-02-20 12:51:03] 2026-02-20 11:50:17,835 | INFO     | chi2: 1.515079208176717
[2026-02-20 12:51:03] 2026-02-20 11:50:17,835 | INFO     | current chi2=1.515079208176717 (change=-0.01082853129228216 %)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,836 | INFO     | right removable region: 332
[2026-02-20 12:51:03] 2026-02-20 11:50:17,841 | INFO     | sum of square deviations: 11973599446.496996
[2026-02-20 12:51:03] 2026-02-20 11:50:17,845 | INFO     | sum of deviations: 629744359.4852104
[2026-02-20 12:51:03] 2026-02-20 11:50:17,845 | INFO     | mean x: 1771577897.5029585
[2026-02-20 12:51:03] 2026-02-20 11:50:17,845 | INFO     | mean y: 2560504.5147928996
[2026-02-20 12:51:03] 2026-02-20 11:50:17,845 | INFO     | intersect: -90614584.00610706
[2026-02-20 12:51:03] 2026-02-20 11:50:17,846 | INFO     | chi2: 0.8324703487947889
[2026-02-20 12:51:03] 2026-02-20 11:50:17,846 | INFO     | current chi2=0.8324703487947889 (change=63.673207610358105 %)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,847 | INFO     | sum of square deviations: 11450045138.996914
[2026-02-20 12:51:03] 2026-02-20 11:50:17,850 | INFO     | sum of deviations: -3181187820.021023
[2026-02-20 12:51:03] 2026-02-20 11:50:17,850 | INFO     | mean x: 1771578050.0030031
[2026-02-20 12:51:03] 2026-02-20 11:50:17,850 | INFO     | mean y: 2561604.021021021
[2026-02-20 12:51:03] 2026-02-20 11:50:17,850 | INFO     | intersect: 494762503.35999674
[2026-02-20 12:51:03] 2026-02-20 11:50:17,851 | INFO     | chi2: 0.8189750419054902
[2026-02-20 12:51:03] 2026-02-20 11:50:17,851 | INFO     | current chi2=0.8189750419054902 (change=1.6211156239782643 %)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,851 | INFO     | left removable region: 20
[2026-02-20 12:51:03] 2026-02-20 11:50:17,852 | INFO     | sum of square deviations: 9417545695.996843
[2026-02-20 12:51:03] 2026-02-20 11:50:17,855 | INFO     | sum of deviations: 22155260990.913464
[2026-02-20 12:51:03] 2026-02-20 11:50:17,855 | INFO     | mean x: 1771578019.503205
[2026-02-20 12:51:03] 2026-02-20 11:50:17,855 | INFO     | mean y: 2566950.5865384615
[2026-02-20 12:51:03] 2026-02-20 11:50:17,855 | INFO     | intersect: -4165161527.1784444
[2026-02-20 12:51:03] 2026-02-20 11:50:17,856 | INFO     | chi2: 0.0016118891437768086
[2026-02-20 12:51:03] 2026-02-20 11:50:17,856 | INFO     | current memory leak: 2.35 B/s (using 312 data points, chi2=0.00)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,857 | INFO     | could have reported an average CPU frequency of 2250 MHz (15 samples)
[2026-02-20 12:51:03] 2026-02-20 11:50:17,857 | INFO     | ..............................
[2026-02-20 12:51:03] 2026-02-20 11:50:17,857 | INFO     | . Timing measurements:
[2026-02-20 12:51:03] 2026-02-20 11:50:17,857 | INFO     | . get job = 0 s
[2026-02-20 12:51:03] 2026-02-20 11:50:17,857 | INFO     | . initial setup = 7 s
[2026-02-20 12:51:03] 2026-02-20 11:50:17,857 | INFO     | . payload setup = 10 s
[2026-02-20 12:51:03] 2026-02-20 11:50:17,858 | INFO     | . stage-in = 0 s
[2026-02-20 12:51:03] 2026-02-20 11:50:17,858 | INFO     | . payload execution = 20904 s
[2026-02-20 12:51:03] 2026-02-20 11:50:17,858 | INFO     | . stage-out = 7 s
[2026-02-20 12:51:03] 2026-02-20 11:50:17,858 | INFO     | . log creation = 1 s
[2026-02-20 12:51:03] 2026-02-20 11:50:17,858 | INFO     | ..............................
[2026-02-20 12:51:03] 2026-02-20 11:50:18,166 | INFO     | 
[2026-02-20 12:51:03] 2026-02-20 11:50:18,166 | INFO     | job summary report
[2026-02-20 12:51:03] 2026-02-20 11:50:18,167 | INFO     | --------------------------------------------------
[2026-02-20 12:51:03] 2026-02-20 11:50:18,171 | INFO     | PanDA job id: 7021114803
[2026-02-20 12:51:03] 2026-02-20 11:50:18,171 | INFO     | task id: 48508763
[2026-02-20 12:51:03] 2026-02-20 11:50:18,171 | INFO     | errors: (none)
[2026-02-20 12:51:03] 2026-02-20 11:50:18,171 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-20 12:51:03] 2026-02-20 11:50:18,171 | INFO     | pilot state: finished 
[2026-02-20 12:51:03] 2026-02-20 11:50:18,171 | INFO     | transexitcode: 0
[2026-02-20 12:51:03] 2026-02-20 11:50:18,171 | INFO     | exeerrorcode: 0
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | exeerrordiag: 
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | exitcode: 0
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | exitmsg: OK
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | cpuconsumptiontime: 81409 s
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | nevents: 400
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | neventsw: 0
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | pid: 15012
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | pgrp: 15012
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | corecount: 8
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | event service: False
[2026-02-20 12:51:03] 2026-02-20 11:50:18,172 | INFO     | sizes: {0: 2281828, 1: 2282289, 11: 2282289, 20919: 2315847, 20920: 2315846, 20928: 2325084, 20931: 2325222}
[2026-02-20 12:51:03] 2026-02-20 11:50:18,173 | INFO     | --------------------------------------------------
[2026-02-20 12:51:03] 2026-02-20 11:50:18,173 | INFO     | 
[2026-02-20 12:51:03] 2026-02-20 11:50:18,173 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-02-20 12:51:03] 2026-02-20 11:50:18,312 | INFO     | time since job start (20943s) is within the limit (349056.0s)
[2026-02-20 12:51:03] 2026-02-20 11:50:18,938 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,938 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | job 7021114803 has completed (purged errors)
[2026-02-20 12:51:03] 2026-02-20 11:50:18,940 | INFO     | overall cleanup function is called
[2026-02-20 12:51:03] 2026-02-20 11:50:19,949 | INFO     | --- collectZombieJob: --- 10, [15012]
[2026-02-20 12:51:03] 2026-02-20 11:50:19,949 | INFO     | zombie collector waiting for pid 15012
[2026-02-20 12:51:03] 2026-02-20 11:50:19,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 12:51:03] 2026-02-20 11:50:19,949 | INFO     | collected zombie processes
[2026-02-20 12:51:03] 2026-02-20 11:50:19,949 | INFO     | will attempt to kill all subprocesses of pid=15012
[2026-02-20 12:51:03] 2026-02-20 11:50:20,060 | INFO     | process IDs to be killed: [15012] (in reverse order)
[2026-02-20 12:51:03] 2026-02-20 11:50:20,717 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 12:51:03] 2026-02-20 11:50:20,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 12:51:03] 2026-02-20 11:50:20,720 | INFO     | did not find any defunct processes belonging to 15012
[2026-02-20 12:51:03] 2026-02-20 11:50:20,723 | INFO     | did not find any defunct processes belonging to 15012
[2026-02-20 12:51:03] 2026-02-20 11:50:20,723 | INFO     | ready for new job
[2026-02-20 12:51:03] 2026-02-20 11:50:20,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 12:51:03] 2026-02-20 11:50:20,725 | INFO     | **************************************
[2026-02-20 12:51:03] 2026-02-20 11:50:20,725 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 12:51:03] 2026-02-20 11:50:20,725 | INFO     | **************************************
[2026-02-20 12:51:03] 2026-02-20 11:50:20,725 | INFO     | 
[2026-02-20 12:51:03] 2026-02-20 11:50:20,726 | INFO     | pilot is running in a VM
[2026-02-20 12:51:03] 2026-02-20 11:50:20,726 | INFO     | architecture information:
[2026-02-20 12:51:03] 2026-02-20 11:50:20,726 | INFO     | executing command: cat /etc/os-release
[2026-02-20 12:51:03] 2026-02-20 11:50:20,741 | INFO     | cat /etc/os-release:
[2026-02-20 12:51:03] NAME="CentOS Linux"
[2026-02-20 12:51:03] VERSION="7 (Core)"
[2026-02-20 12:51:03] ID="centos"
[2026-02-20 12:51:03] ID_LIKE="rhel fedora"
[2026-02-20 12:51:03] VERSION_ID="7"
[2026-02-20 12:51:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 12:51:03] ANSI_COLOR="0;31"
[2026-02-20 12:51:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 12:51:03] HOME_URL="https://www.centos.org/"
[2026-02-20 12:51:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 12:51:03] 
[2026-02-20 12:51:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 12:51:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 12:51:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 12:51:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 12:51:03] 
[2026-02-20 12:51:03] 2026-02-20 11:50:20,741 | INFO     | **************************************
[2026-02-20 12:51:03] 2026-02-20 11:50:21,244 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-02-20 12:51:03] 2026-02-20 11:50:21,347 | INFO     | sufficient remaining disk space (495305359360 B)
[2026-02-20 12:51:03] 2026-02-20 11:50:21,347 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 12:51:03] 2026-02-20 11:50:21,347 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 12:51:03] 2026-02-20 11:50:21,347 | INFO     | update_server=False
[2026-02-20 12:51:03] 2026-02-20 11:50:21,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 12:51:03] 2026-02-20 11:50:21,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 12:51:03] 2026-02-20 11:50:21,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 12:51:03] 2026-02-20 11:50:21,457 | INFO     | aborting loop
[2026-02-20 12:51:03] 2026-02-20 11:50:21,589 | INFO     | all data control threads have been joined
[2026-02-20 12:51:03] 2026-02-20 11:50:22,099 | INFO     | all job control threads have been joined
[2026-02-20 12:51:03] 2026-02-20 11:50:22,353 | INFO     | [job] retrieve thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:22,466 | INFO     | [job] job monitor thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:22,507 | INFO     | [payload] validate_post thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:22,535 | INFO     | [payload] failed_post thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:22,595 | INFO     | [data] control thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:22,668 | INFO     | all payload control threads have been joined
[2026-02-20 12:51:03] 2026-02-20 11:50:22,774 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:22,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 12:51:03] 2026-02-20 11:50:22,811 | INFO     | [data] copytool_in thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:22,941 | INFO     | [job] validate thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:23,105 | INFO     | [job] control thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:23,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 12:51:03] 2026-02-20 11:50:23,246 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:23,246 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:23,262 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:23,674 | INFO     | [payload] control thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:24,188 | INFO     | [job] queue monitor thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:24,803 | INFO     | [data] copytool_out thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:25,357 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 12:51:03] 2026-02-20 11:50:51,568 | INFO     | PID=10500 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-20 12:51:03] 2026-02-20 11:50:51,568 | INFO     | .. there are 9 such processes running
[2026-02-20 12:51:03] 2026-02-20 11:50:51,569 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 12:51:03] 2026-02-20 11:50:51,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 12:51:03] 2026-02-20 11:50:51,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 12:51:03] 2026-02-20 11:50:51,705 | INFO     | [monitor] cgroup control has ended
[2026-02-20 12:51:03] 2026-02-20 11:50:53,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337888884544)>', '<ExcThread(monitor, started 140337318196992)>']
[2026-02-20 12:51:03] 2026-02-20 11:50:53,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 12:51:03] 2026-02-20 11:50:53,581 | INFO     | [monitor] control thread has ended
[2026-02-20 12:51:03] 2026-02-20 11:50:58,364 | INFO     | all workflow threads have been joined
[2026-02-20 12:51:03] 2026-02-20 11:50:58,364 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 12:51:03] 2026-02-20 11:50:58,364 | INFO     | traces error code: 0
[2026-02-20 12:51:03] 2026-02-20 11:50:58,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 12:51:03] 2026-02-20 11:50:58,632 [wrapper] ==== pilot stdout END ====
[2026-02-20 12:51:03] 2026-02-20 11:50:58,734 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 12:51:03] 2026-02-20 11:50:58,784 [wrapper] pilotpid: 10500
[2026-02-20 12:51:03] 2026-02-20 11:50:58,859 [wrapper] Pilot exit status: 0
[2026-02-20 12:51:03] 2026-02-20 11:50:59,330 [wrapper] pandaids: 7021114803
[2026-02-20 12:51:03] 2026-02-20 11:51:00,335 [wrapper] cleanup supervisor_pilot 22877 10501
[2026-02-20 12:51:03] 2026-02-20 11:51:00,431 [wrapper] Test setup, not cleaning
[2026-02-20 12:51:03] 2026-02-20 11:51:00,541 [wrapper] apfmon messages muted
[2026-02-20 12:51:03] 2026-02-20 11:51:00,633 [wrapper] ==== wrapper stdout END ====
[2026-02-20 12:51:03] 2026-02-20 11:51:00,698 [wrapper] ==== wrapper stderr END ====
[2026-02-20 12:51:03]  *** Error codes and diagnostics ***
[2026-02-20 12:51:03]     "exeErrorCode": 0,
[2026-02-20 12:51:03]     "exeErrorDiag": "",
[2026-02-20 12:51:03]     "pilotErrorCode": 0,
[2026-02-20 12:51:03]     "pilotErrorDiag": "",
[2026-02-20 12:51:03]  *** Listing of results directory ***
[2026-02-20 12:51:03] total 950660
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc      5111 Feb 19 14:45 queuedata.json
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc    584627 Feb 19 14:45 pilot3.tar.gz
[2026-02-20 12:51:03] -rwx------. 1 boinc boinc     36322 Feb 19 14:45 runpilot2-wrapper.sh
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc       100 Feb 20 07:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 12:51:03] -rwxr-xr-x. 1 boinc boinc      7986 Feb 20 07:00 run_atlas
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc       105 Feb 20 07:00 job.xml
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc      6391 Feb 20 07:00 init_data.xml
[2026-02-20 12:51:03] -rw-r--r--. 2 boinc boinc 677112752 Feb 20 07:00 EVNT.48508760._000885.pool.root.1
[2026-02-20 12:51:03] -rw-r--r--. 2 boinc boinc     15845 Feb 20 07:00 start_atlas.sh
[2026-02-20 12:51:03] drwxrwx--x. 2 boinc boinc        68 Feb 20 07:00 shared
[2026-02-20 12:51:03] -rw-r--r--. 2 boinc boinc    597959 Feb 20 07:00 input.tar.gz
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc         0 Feb 20 07:00 boinc_lockfile
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc      2552 Feb 20 07:00 pandaJob.out
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc   1001567 Feb 20 07:01 agis_schedconf.cvmfs.json
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc       413 Feb 20 07:01 workernode_map.json
[2026-02-20 12:51:03] drwx------. 5 boinc boinc      4096 Feb 20 07:01 pilot3
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc 285516917 Feb 20 12:48 HITS.48508763._045984.pool.root.1
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc       531 Feb 20 12:48 boinc_task_state.xml
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc      1029 Feb 20 12:50 memory_monitor_summary.json
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc   1513015 Feb 20 12:50 agis_ddmendpoints.agis.ALL.json
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc    545299 Feb 20 12:50 log.48508763._045984.job.log.tgz.1
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc      6314 Feb 20 12:50 heartbeat.json
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc        28 Feb 20 12:50 wrapper_checkpoint.txt
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc      8192 Feb 20 12:50 boinc_mmap_file
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc        95 Feb 20 12:50 pilot_heartbeat.json
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc      4880 Feb 20 12:50 pilotlog.txt
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc   2918417 Feb 20 12:51 log.48508763._045984.job.log.1
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc       357 Feb 20 12:51 output.list
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc       620 Feb 20 12:51 runtime_log
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc   3481600 Feb 20 12:51 result.tar.gz
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc      8816 Feb 20 12:51 runtime_log.err
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc       657 Feb 20 12:51 rJ0KDmeWJD9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1yxKDmNsmBrn.diag
[2026-02-20 12:51:03] -rw-r--r--. 1 boinc boinc     20802 Feb 20 12:51 stderr.txt
[2026-02-20 12:51:03] HITS file was successfully produced:
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc 285516917 Feb 20 12:48 shared/HITS.pool.root.1
[2026-02-20 12:51:03]  *** Contents of shared directory: ***
[2026-02-20 12:51:03] total 944072
[2026-02-20 12:51:03] -rw-r--r--. 2 boinc boinc 677112752 Feb 20 07:00 ATLAS.root_0
[2026-02-20 12:51:03] -rw-r--r--. 2 boinc boinc     15845 Feb 20 07:00 start_atlas.sh
[2026-02-20 12:51:03] -rw-r--r--. 2 boinc boinc    597959 Feb 20 07:00 input.tar.gz
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc 285516917 Feb 20 12:48 HITS.pool.root.1
[2026-02-20 12:51:03] -rw-------. 1 boinc boinc   3481600 Feb 20 12:51 result.tar.gz
12:51:05 (6433): run_atlas exited; CPU time 81692.774772
12:51:05 (6433): called boinc_finish(0)

</stderr_txt>
]]>

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