Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:27:31 (1905336): wrapper (7.7.26015): starting
01:27:31 (1905336): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 01:27:31] Arguments: --nthreads 4
[2026-02-20 01:27:31] Threads: 4
[2026-02-20 01:27:31] Checking for CVMFS
[2026-02-20 01:27:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 01:27:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 01:27:32] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 01:27:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 01:27:32] 2.9.2.0 723037 7146 97668 156429 3 50 19804716 36864001 0 130560 0 3357322 99.987 244449 9996 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 01:27:32] CVMFS is ok
[2026-02-20 01:27:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 01:27:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 01:27:32] Further information can be found at the LHC@home message board.
[2026-02-20 01:27:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 01:27:32] Checking for apptainer binary...
[2026-02-20 01:27:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 01:27:32] Running /usr/bin/apptainer --version
[2026-02-20 01:27:32] apptainer version 1.4.1-1.1
[2026-02-20 01:27:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 01:27:32] thA315b
[2026-02-20 01:27:32] apptainer works
[2026-02-20 01:27:32] Set ATHENA_PROC_NUMBER=4
[2026-02-20 01:27:32] Set ATHENA_CORE_NUMBER=4
[2026-02-20 01:27:32] Starting ATLAS job with PandaID=7021107164
[2026-02-20 01:27:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 02:58:13]  *** The last 200 lines of the pilot log: ***
[2026-02-20 02:58:13] 2026-02-20 01:57:40,476 | INFO     | job 7021107164 has completed (purged errors)
[2026-02-20 02:58:13] 2026-02-20 01:57:40,476 | INFO     | overall cleanup function is called
[2026-02-20 02:58:13] 2026-02-20 01:57:41,483 | INFO     | --- collectZombieJob: --- 10, [1913967]
[2026-02-20 02:58:13] 2026-02-20 01:57:41,483 | INFO     | zombie collector waiting for pid 1913967
[2026-02-20 02:58:13] 2026-02-20 01:57:41,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 02:58:13] 2026-02-20 01:57:41,483 | INFO     | collected zombie processes
[2026-02-20 02:58:13] 2026-02-20 01:57:41,484 | INFO     | will attempt to kill all subprocesses of pid=1913967
[2026-02-20 02:58:13] 2026-02-20 01:57:41,528 | INFO     | process IDs to be killed: [1913967] (in reverse order)
[2026-02-20 02:58:13] 2026-02-20 01:57:41,555 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 02:58:13] 2026-02-20 01:57:41,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 02:58:13] 2026-02-20 01:57:41,556 | INFO     | did not find any defunct processes belonging to 1913967
[2026-02-20 02:58:13] 2026-02-20 01:57:41,558 | INFO     | did not find any defunct processes belonging to 1913967
[2026-02-20 02:58:13] 2026-02-20 01:57:41,558 | INFO     | ready for new job
[2026-02-20 02:58:13] 2026-02-20 01:57:41,558 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 02:58:13] 2026-02-20 01:57:41,558 | INFO     | **************************************
[2026-02-20 02:58:13] 2026-02-20 01:57:41,558 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 02:58:13] 2026-02-20 01:57:41,558 | INFO     | **************************************
[2026-02-20 02:58:13] 2026-02-20 01:57:41,559 | INFO     | 
[2026-02-20 02:58:13] 2026-02-20 01:57:41,559 | INFO     | architecture information:
[2026-02-20 02:58:13] 2026-02-20 01:57:41,559 | INFO     | executing command: cat /etc/os-release
[2026-02-20 02:58:13] 2026-02-20 01:57:41,569 | INFO     | cat /etc/os-release:
[2026-02-20 02:58:13] NAME="CentOS Linux"
[2026-02-20 02:58:13] VERSION="7 (Core)"
[2026-02-20 02:58:13] ID="centos"
[2026-02-20 02:58:13] ID_LIKE="rhel fedora"
[2026-02-20 02:58:13] VERSION_ID="7"
[2026-02-20 02:58:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 02:58:13] ANSI_COLOR="0;31"
[2026-02-20 02:58:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 02:58:13] HOME_URL="https://www.centos.org/"
[2026-02-20 02:58:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 02:58:13] 
[2026-02-20 02:58:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 02:58:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 02:58:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 02:58:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 02:58:13] 
[2026-02-20 02:58:13] 2026-02-20 01:57:41,569 | INFO     | **************************************
[2026-02-20 02:58:13] 2026-02-20 01:57:42,072 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 02:58:13] 2026-02-20 01:57:42,086 | INFO     | sufficient remaining disk space (335552708608 B)
[2026-02-20 02:58:13] 2026-02-20 01:57:42,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 02:58:13] 2026-02-20 01:57:42,087 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 02:58:13] 2026-02-20 01:57:42,087 | INFO     | update_server=False
[2026-02-20 02:58:13] 2026-02-20 01:57:42,087 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 02:58:13] 2026-02-20 01:57:42,087 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 02:58:13] 2026-02-20 01:57:42,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 02:58:13] 2026-02-20 01:57:42,176 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-20 02:58:13] 2026-02-20 01:57:42,177 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-20 02:58:13] 2026-02-20 01:57:42,177 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 02:58:13] 2026-02-20 01:57:42,177 | INFO     | will abort loop
[2026-02-20 02:58:13] 2026-02-20 01:57:42,444 | INFO     | all data control threads have been joined
[2026-02-20 02:58:13] 2026-02-20 01:57:42,730 | INFO     | all payload control threads have been joined
[2026-02-20 02:58:13] 2026-02-20 01:57:42,946 | INFO     | job.realtimelogging is not enabled
[2026-02-20 02:58:13] 2026-02-20 01:57:43,092 | INFO     | [job] retrieve thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:43,093 | INFO     | [job] queue monitor thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:43,183 | INFO     | [job] job monitor thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:43,233 | INFO     | [data] copytool_in thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:43,449 | INFO     | [data] control thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:43,451 | INFO     | all job control threads have been joined
[2026-02-20 02:58:13] 2026-02-20 01:57:43,690 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:43,735 | INFO     | [payload] control thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:43,951 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:44,018 | INFO     | [payload] validate_post thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:44,093 | INFO     | [data] copytool_out thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:44,456 | INFO     | [job] control thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:44,464 | INFO     | [payload] failed_post thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:44,476 | INFO     | [job] validate thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:44,535 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:44,535 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:45,533 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 02:58:13] 2026-02-20 01:57:49,540 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 02:58:13] 2026-02-20 01:57:50,695 | INFO     | [monitor] cgroup control has ended
[2026-02-20 02:58:13] 2026-02-20 01:57:50,865 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642482104128)>', '<ExcThread(monitor, started 139641860646656)>']
[2026-02-20 02:58:13] 2026-02-20 01:57:55,890 | INFO     | all workflow threads have been joined
[2026-02-20 02:58:13] 2026-02-20 01:57:55,891 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 02:58:13] 2026-02-20 01:57:55,891 | INFO     | traces error code: 0
[2026-02-20 02:58:13] 2026-02-20 01:57:55,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 02:58:13] 2026-02-20 01:58:13,021 | INFO     | PID=1909447 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 02:58:13] 2026-02-20 01:58:13,021 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 02:58:13] 2026-02-20 01:58:13,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 02:58:13] 2026-02-20 01:58:13,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 02:58:13] 2026-02-20 01:58:13,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 02:58:13] 2026-02-20 01:58:13,022 | CRITICAL | thread 'MainThread' is not alive
[2026-02-20 02:58:13] 2026-02-20 01:58:13,022 | INFO     | [monitor] control thread has ended
[2026-02-20 02:58:13] 2026-02-20 01:58:13,073 [wrapper] ==== pilot stdout END ====
[2026-02-20 02:58:13] 2026-02-20 01:58:13,075 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 02:58:13] 2026-02-20 01:58:13,078 [wrapper] pilotpid: 1909447
[2026-02-20 02:58:13] 2026-02-20 01:58:13,080 [wrapper] Pilot exit status: 0
[2026-02-20 02:58:13] 2026-02-20 01:58:13,088 [wrapper] pandaids: 7021107164
[2026-02-20 02:58:13] 2026-02-20 01:58:13,106 [wrapper] cleanup supervisor_pilot 1919301 1909448
[2026-02-20 02:58:13] 2026-02-20 01:58:13,109 [wrapper] Test setup, not cleaning
[2026-02-20 02:58:13] 2026-02-20 01:58:13,111 [wrapper] apfmon messages muted
[2026-02-20 02:58:13] 2026-02-20 01:58:13,113 [wrapper] ==== wrapper stdout END ====
[2026-02-20 02:58:13] 2026-02-20 01:58:13,116 [wrapper] ==== wrapper stderr END ====
[2026-02-20 02:58:13]  *** Error codes and diagnostics ***
[2026-02-20 02:58:13]     "exeErrorCode": 0,
[2026-02-20 02:58:13]     "exeErrorDiag": "",
[2026-02-20 02:58:13]     "pilotErrorCode": 0,
[2026-02-20 02:58:13]     "pilotErrorDiag": "",
[2026-02-20 02:58:13]  *** Listing of results directory ***
[2026-02-20 02:58:13] total 955280
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc    584627 Feb 19 06:33 pilot3.tar.gz
[2026-02-20 02:58:13] -rwx------ 1 boinc boinc     36322 Feb 19 06:35 runpilot2-wrapper.sh
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc      5111 Feb 19 06:36 queuedata.json
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc       100 Feb 20 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 02:58:13] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 01:27 run_atlas
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc       105 Feb 20 01:27 job.xml
[2026-02-20 02:58:13] -rw-r--r-- 2 boinc boinc 689776653 Feb 20 01:27 EVNT.48508760._000817.pool.root.1
[2026-02-20 02:58:13] -rw-r--r-- 2 boinc boinc    597963 Feb 20 01:27 input.tar.gz
[2026-02-20 02:58:13] -rw-r--r-- 2 boinc boinc     15845 Feb 20 01:27 start_atlas.sh
[2026-02-20 02:58:13] drwxrwx--x 2 boinc boinc      4096 Feb 20 01:27 shared
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc         0 Feb 20 01:27 boinc_setup_complete
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc      6443 Feb 20 01:27 init_data.xml
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc         0 Feb 20 01:27 boinc_lockfile
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc      2552 Feb 20 01:27 pandaJob.out
[2026-02-20 02:58:13] -rw------- 1 boinc boinc   1001559 Feb 20 01:27 agis_schedconf.cvmfs.json
[2026-02-20 02:58:13] -rw------- 1 boinc boinc   1513015 Feb 20 01:27 agis_ddmendpoints.agis.ALL.json
[2026-02-20 02:58:13] -rw------- 1 boinc boinc       418 Feb 20 01:27 workernode_map.json
[2026-02-20 02:58:13] drwx------ 5 boinc boinc      4096 Feb 20 01:27 pilot3
[2026-02-20 02:58:13] -rw------- 1 boinc boinc 282340337 Feb 20 02:57 HITS.48508763._042611.pool.root.1
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc       530 Feb 20 02:57 boinc_task_state.xml
[2026-02-20 02:58:13] -rw------- 1 boinc boinc      1019 Feb 20 02:57 memory_monitor_summary.json
[2026-02-20 02:58:13] -rw------- 1 boinc boinc    302870 Feb 20 02:57 log.48508763._042611.job.log.tgz.1
[2026-02-20 02:58:13] -rw------- 1 boinc boinc      6301 Feb 20 02:57 heartbeat.json
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc        27 Feb 20 02:57 wrapper_checkpoint.txt
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc      8192 Feb 20 02:57 boinc_mmap_file
[2026-02-20 02:58:13] -rw------- 1 boinc boinc        95 Feb 20 02:58 pilot_heartbeat.json
[2026-02-20 02:58:13] -rw------- 1 boinc boinc       817 Feb 20 02:58 pilotlog.txt
[2026-02-20 02:58:13] -rw------- 1 boinc boinc    785995 Feb 20 02:58 log.48508763._042611.job.log.1
[2026-02-20 02:58:13] -rw------- 1 boinc boinc       357 Feb 20 02:58 output.list
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc       620 Feb 20 02:58 runtime_log
[2026-02-20 02:58:13] -rw------- 1 boinc boinc   1105920 Feb 20 02:58 result.tar.gz
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc      8901 Feb 20 02:58 runtime_log.err
[2026-02-20 02:58:13] -rw------- 1 boinc boinc       658 Feb 20 02:58 2fNNDmOsBD9n9Rq4apOajLDm4fhM0noT9bVooX4SDmd4vKDmCUOEgn.diag
[2026-02-20 02:58:13] -rw-r--r-- 1 boinc boinc     11224 Feb 20 02:58 stderr.txt
[2026-02-20 02:58:13] HITS file was successfully produced:
[2026-02-20 02:58:13] -rw------- 1 boinc boinc 282340337 Feb 20 02:57 shared/HITS.pool.root.1
[2026-02-20 02:58:13]  *** Contents of shared directory: ***
[2026-02-20 02:58:13] total 951024
[2026-02-20 02:58:13] -rw-r--r-- 2 boinc boinc 689776653 Feb 20 01:27 ATLAS.root_0
[2026-02-20 02:58:13] -rw-r--r-- 2 boinc boinc    597963 Feb 20 01:27 input.tar.gz
[2026-02-20 02:58:13] -rw-r--r-- 2 boinc boinc     15845 Feb 20 01:27 start_atlas.sh
[2026-02-20 02:58:13] -rw------- 1 boinc boinc 282340337 Feb 20 02:57 HITS.pool.root.1
[2026-02-20 02:58:13] -rw------- 1 boinc boinc   1105920 Feb 20 02:58 result.tar.gz
02:58:35 (1905336): run_atlas exited; CPU time 20686.318034
02:58:35 (1905336): called boinc_finish(0)

</stderr_txt>
]]>

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