Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:06:53 (1210500): wrapper (7.7.26015): starting
02:06:53 (1210500): wrapper: running run_atlas (--nthreads 3)
[2026-02-20 02:06:53] Arguments: --nthreads 3
[2026-02-20 02:06:53] Threads: 3
[2026-02-20 02:06:53] Checking for CVMFS
[2026-02-20 02:06:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 02:06:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 02:06:54] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 02:06:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 02:06:54] 2.9.2.0 1196108 116 50664 156429 3 50 28907659 36864000 0 130560 0 40471 99.982 4104 23451 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 02:06:54] CVMFS is ok
[2026-02-20 02:06:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 02:06:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 02:06:54] Further information can be found at the LHC@home message board.
[2026-02-20 02:06:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 02:06:54] Checking for apptainer binary...
[2026-02-20 02:06:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 02:06:54] Running /usr/bin/apptainer --version
[2026-02-20 02:06:54] apptainer version 1.4.1-1.1
[2026-02-20 02:06:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 02:06:54] magicA161a
[2026-02-20 02:06:54] apptainer works
[2026-02-20 02:06:54] Set ATHENA_PROC_NUMBER=3
[2026-02-20 02:06:54] Set ATHENA_CORE_NUMBER=3
[2026-02-20 02:06:54] Starting ATLAS job with PandaID=7021102123
[2026-02-20 02:06:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 04:05:18]  *** The last 200 lines of the pilot log: ***
[2026-02-20 04:05:18] 2026-02-20 03:04:43,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 04:05:18] 2026-02-20 03:04:43,432 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 04:05:18] 2026-02-20 03:04:43,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 04:05:18] 2026-02-20 03:04:43,432 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 04:05:18] 2026-02-20 03:04:43,432 | INFO     | job 7021102123 has completed (purged errors)
[2026-02-20 04:05:18] 2026-02-20 03:04:43,432 | INFO     | overall cleanup function is called
[2026-02-20 04:05:18] 2026-02-20 03:04:44,439 | INFO     | --- collectZombieJob: --- 10, [1218960]
[2026-02-20 04:05:18] 2026-02-20 03:04:44,439 | INFO     | zombie collector waiting for pid 1218960
[2026-02-20 04:05:18] 2026-02-20 03:04:44,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 04:05:18] 2026-02-20 03:04:44,439 | INFO     | collected zombie processes
[2026-02-20 04:05:18] 2026-02-20 03:04:44,439 | INFO     | will attempt to kill all subprocesses of pid=1218960
[2026-02-20 04:05:18] 2026-02-20 03:04:44,479 | INFO     | process IDs to be killed: [1218960] (in reverse order)
[2026-02-20 04:05:18] 2026-02-20 03:04:44,503 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 04:05:18] 2026-02-20 03:04:44,503 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 04:05:18] 2026-02-20 03:04:44,504 | INFO     | did not find any defunct processes belonging to 1218960
[2026-02-20 04:05:18] 2026-02-20 03:04:44,505 | INFO     | did not find any defunct processes belonging to 1218960
[2026-02-20 04:05:18] 2026-02-20 03:04:44,505 | INFO     | ready for new job
[2026-02-20 04:05:18] 2026-02-20 03:04:44,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 04:05:18] 2026-02-20 03:04:44,506 | INFO     | **************************************
[2026-02-20 04:05:18] 2026-02-20 03:04:44,506 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 04:05:18] 2026-02-20 03:04:44,506 | INFO     | **************************************
[2026-02-20 04:05:18] 2026-02-20 03:04:44,506 | INFO     | 
[2026-02-20 04:05:18] 2026-02-20 03:04:44,506 | INFO     | architecture information:
[2026-02-20 04:05:18] 2026-02-20 03:04:44,507 | INFO     | executing command: cat /etc/os-release
[2026-02-20 04:05:18] 2026-02-20 03:04:44,515 | INFO     | cat /etc/os-release:
[2026-02-20 04:05:18] NAME="CentOS Linux"
[2026-02-20 04:05:18] VERSION="7 (Core)"
[2026-02-20 04:05:18] ID="centos"
[2026-02-20 04:05:18] ID_LIKE="rhel fedora"
[2026-02-20 04:05:18] VERSION_ID="7"
[2026-02-20 04:05:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 04:05:18] ANSI_COLOR="0;31"
[2026-02-20 04:05:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 04:05:18] HOME_URL="https://www.centos.org/"
[2026-02-20 04:05:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 04:05:18] 
[2026-02-20 04:05:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 04:05:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 04:05:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 04:05:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 04:05:18] 
[2026-02-20 04:05:18] 2026-02-20 03:04:44,515 | INFO     | **************************************
[2026-02-20 04:05:18] 2026-02-20 03:04:45,018 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | INFO     | sufficient remaining disk space (371754795008 B)
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | INFO     | update_server=False
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 04:05:18] 2026-02-20 03:04:45,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 04:05:18] 2026-02-20 03:04:45,032 | INFO     | aborting loop
[2026-02-20 04:05:18] 2026-02-20 03:04:45,850 | INFO     | all data control threads have been joined
[2026-02-20 04:05:18] 2026-02-20 03:04:45,941 | INFO     | all job control threads have been joined
[2026-02-20 04:05:18] 2026-02-20 03:04:46,037 | INFO     | [job] retrieve thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:46,037 | INFO     | [job] queue monitor thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:46,037 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:46,037 | INFO     | [job] job monitor thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:46,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 04:05:18] 2026-02-20 03:04:46,159 | INFO     | [data] copytool_in thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:46,248 | INFO     | [payload] failed_post thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:46,448 | INFO     | all payload control threads have been joined
[2026-02-20 04:05:18] 2026-02-20 03:04:46,856 | INFO     | [data] control thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:46,947 | INFO     | [job] control thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:47,050 | INFO     | job.realtimelogging is not enabled
[2026-02-20 04:05:18] 2026-02-20 03:04:47,237 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:47,375 | INFO     | [job] validate thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:47,448 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:47,454 | INFO     | [payload] control thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:47,564 | INFO     | [payload] validate_post thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:48,055 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:48,139 | INFO     | [data] copytool_out thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:04:49,038 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 04:05:18] 2026-02-20 03:05:12,216 | INFO     | [monitor] cgroup control has ended
[2026-02-20 04:05:18] 2026-02-20 03:05:12,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139840735311680)>', '<ExcThread(monitor, started 139839957620480)>']
[2026-02-20 04:05:18] 2026-02-20 03:05:15,444 | INFO     | PID=1214541 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 04:05:18] 2026-02-20 03:05:15,444 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 04:05:18] 2026-02-20 03:05:15,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 04:05:18] 2026-02-20 03:05:15,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 04:05:18] 2026-02-20 03:05:15,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 04:05:18] 2026-02-20 03:05:15,445 | INFO     | [monitor] control thread has ended
[2026-02-20 04:05:18] 2026-02-20 03:05:17,988 | INFO     | all workflow threads have been joined
[2026-02-20 04:05:18] 2026-02-20 03:05:17,988 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 04:05:18] 2026-02-20 03:05:17,988 | INFO     | traces error code: 0
[2026-02-20 04:05:18] 2026-02-20 03:05:17,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 04:05:18] 2026-02-20 03:05:18,036 [wrapper] ==== pilot stdout END ====
[2026-02-20 04:05:18] 2026-02-20 03:05:18,038 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 04:05:18] 2026-02-20 03:05:18,041 [wrapper] pilotpid: 1214541
[2026-02-20 04:05:18] 2026-02-20 03:05:18,043 [wrapper] Pilot exit status: 0
[2026-02-20 04:05:18] 2026-02-20 03:05:18,050 [wrapper] pandaids: 7021102123
[2026-02-20 04:05:18] 2026-02-20 03:05:18,066 [wrapper] cleanup supervisor_pilot 1224561 1214542
[2026-02-20 04:05:18] 2026-02-20 03:05:18,068 [wrapper] Test setup, not cleaning
[2026-02-20 04:05:18] 2026-02-20 03:05:18,070 [wrapper] apfmon messages muted
[2026-02-20 04:05:18] 2026-02-20 03:05:18,073 [wrapper] ==== wrapper stdout END ====
[2026-02-20 04:05:18] 2026-02-20 03:05:18,075 [wrapper] ==== wrapper stderr END ====
[2026-02-20 04:05:18]  *** Error codes and diagnostics ***
[2026-02-20 04:05:18]     "exeErrorCode": 0,
[2026-02-20 04:05:18]     "exeErrorDiag": "",
[2026-02-20 04:05:18]     "pilotErrorCode": 0,
[2026-02-20 04:05:18]     "pilotErrorDiag": "",
[2026-02-20 04:05:18]  *** Listing of results directory ***
[2026-02-20 04:05:18] total 943900
[2026-02-20 04:05:18] -rwx------ 1 boinc boinc     36322 Feb 19 03:46 runpilot2-wrapper.sh
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc    584627 Feb 19 03:50 pilot3.tar.gz
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc      5111 Feb 19 03:51 queuedata.json
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc       100 Feb 20 02:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 04:05:18] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 02:06 run_atlas
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc       105 Feb 20 02:06 job.xml
[2026-02-20 04:05:18] -rw-r--r-- 2 boinc boinc 675092125 Feb 20 02:06 EVNT.48508760._000770.pool.root.1
[2026-02-20 04:05:18] -rw-r--r-- 2 boinc boinc    597958 Feb 20 02:06 input.tar.gz
[2026-02-20 04:05:18] -rw-r--r-- 2 boinc boinc     15845 Feb 20 02:06 start_atlas.sh
[2026-02-20 04:05:18] drwxrwx--x 2 boinc boinc      4096 Feb 20 02:06 shared
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc         0 Feb 20 02:06 boinc_setup_complete
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc      6448 Feb 20 02:06 init_data.xml
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc         0 Feb 20 02:06 boinc_lockfile
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc      2553 Feb 20 02:06 pandaJob.out
[2026-02-20 04:05:18] -rw------- 1 boinc boinc   1001559 Feb 20 02:07 agis_schedconf.cvmfs.json
[2026-02-20 04:05:18] -rw------- 1 boinc boinc   1513015 Feb 20 02:07 agis_ddmendpoints.agis.ALL.json
[2026-02-20 04:05:18] -rw------- 1 boinc boinc       427 Feb 20 02:07 workernode_map.json
[2026-02-20 04:05:18] drwx------ 5 boinc boinc      4096 Feb 20 02:07 pilot3
[2026-02-20 04:05:18] -rw------- 1 boinc boinc 284890214 Feb 20 04:04 HITS.48508763._040252.pool.root.1
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc       530 Feb 20 04:04 boinc_task_state.xml
[2026-02-20 04:05:18] -rw------- 1 boinc boinc        95 Feb 20 04:04 pilot_heartbeat.json
[2026-02-20 04:05:18] -rw------- 1 boinc boinc      1017 Feb 20 04:04 memory_monitor_summary.json
[2026-02-20 04:05:18] -rw------- 1 boinc boinc    311090 Feb 20 04:04 log.48508763._040252.job.log.tgz.1
[2026-02-20 04:05:18] -rw------- 1 boinc boinc      6307 Feb 20 04:04 heartbeat.json
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc      8192 Feb 20 04:05 boinc_mmap_file
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc        27 Feb 20 04:05 wrapper_checkpoint.txt
[2026-02-20 04:05:18] -rw------- 1 boinc boinc      4820 Feb 20 04:05 pilotlog.txt
[2026-02-20 04:05:18] -rw------- 1 boinc boinc   1015270 Feb 20 04:05 log.48508763._040252.job.log.1
[2026-02-20 04:05:18] -rw------- 1 boinc boinc       357 Feb 20 04:05 output.list
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc       620 Feb 20 04:05 runtime_log
[2026-02-20 04:05:18] -rw------- 1 boinc boinc   1341440 Feb 20 04:05 result.tar.gz
[2026-02-20 04:05:18] -rw------- 1 boinc boinc       661 Feb 20 04:05 wEANDmeE9C9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmEKxKDmP1iNSm.diag
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc      8916 Feb 20 04:05 runtime_log.err
[2026-02-20 04:05:18] -rw-r--r-- 1 boinc boinc     11303 Feb 20 04:05 stderr.txt
[2026-02-20 04:05:18] HITS file was successfully produced:
[2026-02-20 04:05:18] -rw------- 1 boinc boinc 284890214 Feb 20 04:04 shared/HITS.pool.root.1
[2026-02-20 04:05:18]  *** Contents of shared directory: ***
[2026-02-20 04:05:18] total 939408
[2026-02-20 04:05:18] -rw-r--r-- 2 boinc boinc 675092125 Feb 20 02:06 ATLAS.root_0
[2026-02-20 04:05:18] -rw-r--r-- 2 boinc boinc    597958 Feb 20 02:06 input.tar.gz
[2026-02-20 04:05:18] -rw-r--r-- 2 boinc boinc     15845 Feb 20 02:06 start_atlas.sh
[2026-02-20 04:05:18] -rw------- 1 boinc boinc 284890214 Feb 20 04:04 HITS.pool.root.1
[2026-02-20 04:05:18] -rw------- 1 boinc boinc   1341440 Feb 20 04:05 result.tar.gz
04:05:19 (1210500): run_atlas exited; CPU time 20469.947595
04:05:19 (1210500): called boinc_finish(0)

</stderr_txt>
]]>

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