Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:12:59 (3999609): wrapper (7.7.26015): starting
22:12:59 (3999609): wrapper: running run_atlas (--nthreads 4)
[2026-02-19 22:12:59] Arguments: --nthreads 4
[2026-02-19 22:12:59] Threads: 4
[2026-02-19 22:12:59] Checking for CVMFS
[2026-02-19 22:12:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 22:13:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 22:13:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 22:13:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 22:13:00] 2.9.2.0 2911421 7117 103492 156422 0 188 28409624 36864001 0 130560 0 3047189 99.986 242907 9434 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-19 22:13:00] CVMFS is ok
[2026-02-19 22:13:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 22:13:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 22:13:00] Further information can be found at the LHC@home message board.
[2026-02-19 22:13:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 22:13:00] Checking for apptainer binary...
[2026-02-19 22:13:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 22:13:00] Running /usr/bin/apptainer --version
[2026-02-19 22:13:00] apptainer version 1.4.1-1.1
[2026-02-19 22:13:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 22:13:00] thA314a
[2026-02-19 22:13:00] apptainer works
[2026-02-19 22:13:00] Set ATHENA_PROC_NUMBER=4
[2026-02-19 22:13:00] Set ATHENA_CORE_NUMBER=4
[2026-02-19 22:13:00] Starting ATLAS job with PandaID=7020285598
[2026-02-19 22:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-19 23:22:23]  *** The last 200 lines of the pilot log: ***
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | job 7020285598 has completed (purged errors)
[2026-02-19 23:22:23] 2026-02-19 22:21:49,341 | INFO     | overall cleanup function is called
[2026-02-19 23:22:23] 2026-02-19 22:21:50,348 | INFO     | --- collectZombieJob: --- 10, [4008227]
[2026-02-19 23:22:23] 2026-02-19 22:21:50,348 | INFO     | zombie collector waiting for pid 4008227
[2026-02-19 23:22:23] 2026-02-19 22:21:50,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-19 23:22:23] 2026-02-19 22:21:50,348 | INFO     | collected zombie processes
[2026-02-19 23:22:23] 2026-02-19 22:21:50,348 | INFO     | will attempt to kill all subprocesses of pid=4008227
[2026-02-19 23:22:23] 2026-02-19 22:21:50,392 | INFO     | process IDs to be killed: [4008227] (in reverse order)
[2026-02-19 23:22:23] 2026-02-19 22:21:50,423 | WARNING  | found no corresponding commands to process id(s)
[2026-02-19 23:22:23] 2026-02-19 22:21:50,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-19 23:22:23] 2026-02-19 22:21:50,425 | INFO     | did not find any defunct processes belonging to 4008227
[2026-02-19 23:22:23] 2026-02-19 22:21:50,427 | INFO     | did not find any defunct processes belonging to 4008227
[2026-02-19 23:22:23] 2026-02-19 22:21:50,427 | INFO     | ready for new job
[2026-02-19 23:22:23] 2026-02-19 22:21:50,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-19 23:22:23] 2026-02-19 22:21:50,427 | INFO     | **************************************
[2026-02-19 23:22:23] 2026-02-19 22:21:50,427 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-19 23:22:23] 2026-02-19 22:21:50,427 | INFO     | **************************************
[2026-02-19 23:22:23] 2026-02-19 22:21:50,427 | INFO     | 
[2026-02-19 23:22:23] 2026-02-19 22:21:50,428 | INFO     | architecture information:
[2026-02-19 23:22:23] 2026-02-19 22:21:50,428 | INFO     | executing command: cat /etc/os-release
[2026-02-19 23:22:23] 2026-02-19 22:21:50,441 | INFO     | cat /etc/os-release:
[2026-02-19 23:22:23] NAME="CentOS Linux"
[2026-02-19 23:22:23] VERSION="7 (Core)"
[2026-02-19 23:22:23] ID="centos"
[2026-02-19 23:22:23] ID_LIKE="rhel fedora"
[2026-02-19 23:22:23] VERSION_ID="7"
[2026-02-19 23:22:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-19 23:22:23] ANSI_COLOR="0;31"
[2026-02-19 23:22:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-19 23:22:23] HOME_URL="https://www.centos.org/"
[2026-02-19 23:22:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-19 23:22:23] 
[2026-02-19 23:22:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-19 23:22:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-19 23:22:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-19 23:22:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-19 23:22:23] 
[2026-02-19 23:22:23] 2026-02-19 22:21:50,442 | INFO     | **************************************
[2026-02-19 23:22:23] 2026-02-19 22:21:50,945 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-19 23:22:23] 2026-02-19 22:21:50,959 | INFO     | sufficient remaining disk space (226899263488 B)
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | INFO     | current server update state: UPDATING_FINAL
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | INFO     | update_server=False
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | INFO     | found 0 job(s) in 20 queues
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-19 23:22:23] 2026-02-19 22:21:50,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-19 23:22:23] 2026-02-19 22:21:51,007 | INFO     | all job control threads have been joined
[2026-02-19 23:22:23] 2026-02-19 22:21:51,221 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-19 23:22:23] 2026-02-19 22:21:51,222 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-19 23:22:23] 2026-02-19 22:21:51,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-19 23:22:23] 2026-02-19 22:21:51,222 | INFO     | will abort loop
[2026-02-19 23:22:23] 2026-02-19 22:21:51,339 | INFO     | all data control threads have been joined
[2026-02-19 23:22:23] 2026-02-19 22:21:51,966 | INFO     | [job] retrieve thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:51,966 | INFO     | [job] queue monitor thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:51,995 | INFO     | [job] create_data_payload thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,013 | INFO     | [job] control thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,105 | INFO     | [payload] validate_pre thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,201 | INFO     | all payload control threads have been joined
[2026-02-19 23:22:23] 2026-02-19 22:21:52,216 | INFO     | [data] copytool_in thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,227 | INFO     | [job] job monitor thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,345 | INFO     | [data] control thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-19 23:22:23] 2026-02-19 22:21:52,605 | INFO     | [payload] failed_post thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,647 | INFO     | [payload] execute_payloads thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:52,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-19 23:22:23] 2026-02-19 22:21:53,207 | INFO     | [payload] control thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:53,282 | INFO     | [payload] validate_post thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:53,401 | INFO     | [job] validate thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:54,442 | INFO     | [data] copytool_out thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:21:56,807 | INFO     | [data] queue_monitor thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:22:01,529 | INFO     | job.realtimelogging is not enabled
[2026-02-19 23:22:23] 2026-02-19 22:22:02,535 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-19 23:22:23] 2026-02-19 22:22:18,697 | INFO     | [monitor] cgroup control has ended
[2026-02-19 23:22:23] 2026-02-19 22:22:18,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140654625507136)>', '<ExcThread(monitor, started 140653468055296)>']
[2026-02-19 23:22:23] 2026-02-19 22:22:19,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-19 23:22:23] 2026-02-19 22:22:19,111 | INFO     | [monitor] control thread has ended
[2026-02-19 23:22:23] 2026-02-19 22:22:23,763 | INFO     | all workflow threads have been joined
[2026-02-19 23:22:23] 2026-02-19 22:22:23,764 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-19 23:22:23] 2026-02-19 22:22:23,764 | INFO     | traces error code: 0
[2026-02-19 23:22:23] 2026-02-19 22:22:23,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-19 23:22:23] 2026-02-19 22:22:23,832 [wrapper] ==== pilot stdout END ====
[2026-02-19 23:22:23] 2026-02-19 22:22:23,837 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-19 23:22:23] 2026-02-19 22:22:23,840 [wrapper] pilotpid: 4003711
[2026-02-19 23:22:23] 2026-02-19 22:22:23,844 [wrapper] Pilot exit status: 0
[2026-02-19 23:22:23] 2026-02-19 22:22:23,855 [wrapper] pandaids: 7020285598
[2026-02-19 23:22:23] 2026-02-19 22:22:23,875 [wrapper] cleanup supervisor_pilot 4013256 4003712
[2026-02-19 23:22:23] 2026-02-19 22:22:23,878 [wrapper] Test setup, not cleaning
[2026-02-19 23:22:23] 2026-02-19 22:22:23,881 [wrapper] apfmon messages muted
[2026-02-19 23:22:23] 2026-02-19 22:22:23,885 [wrapper] ==== wrapper stdout END ====
[2026-02-19 23:22:23] 2026-02-19 22:22:23,888 [wrapper] ==== wrapper stderr END ====
[2026-02-19 23:22:23]  *** Error codes and diagnostics ***
[2026-02-19 23:22:23]     "exeErrorCode": 0,
[2026-02-19 23:22:23]     "exeErrorDiag": "",
[2026-02-19 23:22:23]     "pilotErrorCode": 0,
[2026-02-19 23:22:23]     "pilotErrorDiag": "",
[2026-02-19 23:22:23]  *** Listing of results directory ***
[2026-02-19 23:22:23] total 671044
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc    584627 Feb 18 22:23 pilot3.tar.gz
[2026-02-19 23:22:23] -rwx------ 1 boinc boinc     36322 Feb 18 22:27 runpilot2-wrapper.sh
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc      5111 Feb 18 22:32 queuedata.json
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc       100 Feb 19 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-19 23:22:23] -rwxr-xr-x 1 boinc boinc      7986 Feb 19 22:12 run_atlas
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc       105 Feb 19 22:12 job.xml
[2026-02-19 23:22:23] -rw-r--r-- 2 boinc boinc 499535367 Feb 19 22:12 EVNT.48318032._000313.pool.root.1
[2026-02-19 23:22:23] -rw-r--r-- 2 boinc boinc    597964 Feb 19 22:12 input.tar.gz
[2026-02-19 23:22:23] -rw-r--r-- 2 boinc boinc     15845 Feb 19 22:12 start_atlas.sh
[2026-02-19 23:22:23] drwxrwx--x 2 boinc boinc      4096 Feb 19 22:12 shared
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc         0 Feb 19 22:12 boinc_setup_complete
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc      6371 Feb 19 22:12 init_data.xml
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc         0 Feb 19 22:12 boinc_lockfile
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc      2538 Feb 19 22:13 pandaJob.out
[2026-02-19 23:22:23] -rw------- 1 boinc boinc   1001567 Feb 19 22:13 agis_schedconf.cvmfs.json
[2026-02-19 23:22:23] -rw------- 1 boinc boinc   1513015 Feb 19 22:13 agis_ddmendpoints.agis.ALL.json
[2026-02-19 23:22:23] -rw------- 1 boinc boinc       427 Feb 19 22:13 workernode_map.json
[2026-02-19 23:22:23] drwx------ 5 boinc boinc      4096 Feb 19 22:13 pilot3
[2026-02-19 23:22:23] -rw------- 1 boinc boinc 181870273 Feb 19 23:21 HITS.48318034._020233.pool.root.1
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc       530 Feb 19 23:21 boinc_task_state.xml
[2026-02-19 23:22:23] -rw------- 1 boinc boinc        95 Feb 19 23:21 pilot_heartbeat.json
[2026-02-19 23:22:23] -rw------- 1 boinc boinc      1021 Feb 19 23:21 memory_monitor_summary.json
[2026-02-19 23:22:23] -rw------- 1 boinc boinc    297935 Feb 19 23:21 log.48318034._020233.job.log.tgz.1
[2026-02-19 23:22:23] -rw------- 1 boinc boinc      6313 Feb 19 23:21 heartbeat.json
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc        27 Feb 19 23:22 wrapper_checkpoint.txt
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc      8192 Feb 19 23:22 boinc_mmap_file
[2026-02-19 23:22:23] -rw------- 1 boinc boinc      4810 Feb 19 23:22 pilotlog.txt
[2026-02-19 23:22:23] -rw------- 1 boinc boinc    613190 Feb 19 23:22 log.48318034._020233.job.log.1
[2026-02-19 23:22:23] -rw------- 1 boinc boinc       357 Feb 19 23:22 output.list
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc       620 Feb 19 23:22 runtime_log
[2026-02-19 23:22:23] -rw------- 1 boinc boinc    931840 Feb 19 23:22 result.tar.gz
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc      8901 Feb 19 23:22 runtime_log.err
[2026-02-19 23:22:23] -rw------- 1 boinc boinc       658 Feb 19 23:22 PbHKDmBG4C9n9Rq4apOajLDm4fhM0noT9bVooX4SDmbdvKDmOshVgn.diag
[2026-02-19 23:22:23] -rw-r--r-- 1 boinc boinc     11970 Feb 19 23:22 stderr.txt
[2026-02-19 23:22:23] HITS file was successfully produced:
[2026-02-19 23:22:23] -rw------- 1 boinc boinc 181870273 Feb 19 23:21 shared/HITS.pool.root.1
[2026-02-19 23:22:23]  *** Contents of shared directory: ***
[2026-02-19 23:22:23] total 666956
[2026-02-19 23:22:23] -rw-r--r-- 2 boinc boinc 499535367 Feb 19 22:12 ATLAS.root_0
[2026-02-19 23:22:23] -rw-r--r-- 2 boinc boinc    597964 Feb 19 22:12 input.tar.gz
[2026-02-19 23:22:23] -rw-r--r-- 2 boinc boinc     15845 Feb 19 22:12 start_atlas.sh
[2026-02-19 23:22:23] -rw------- 1 boinc boinc 181870273 Feb 19 23:21 HITS.pool.root.1
[2026-02-19 23:22:23] -rw------- 1 boinc boinc    931840 Feb 19 23:22 result.tar.gz
23:22:25 (3999609): run_atlas exited; CPU time 15465.129949
23:22:25 (3999609): called boinc_finish(0)

</stderr_txt>
]]>

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