Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:13:19 (4149204): wrapper (7.7.26015): starting
13:13:19 (4149204): wrapper: running run_atlas (--nthreads 4)
[2026-02-19 13:13:19] Arguments: --nthreads 4
[2026-02-19 13:13:19] Threads: 4
[2026-02-19 13:13:19] Checking for CVMFS
[2026-02-19 13:13:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 13:13:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 13:13:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 13:13:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 13:13:19] 2.13.1.0 1296585 4572 88384 156410 0 187 5972691 10240000 1778 130560 0 6717463 99.995 184536 174 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-19 13:13:19] CVMFS is ok
[2026-02-19 13:13:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 13:13:19] Checking for apptainer binary...
[2026-02-19 13:13:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 13:13:19] Running /usr/bin/apptainer --version
[2026-02-19 13:13:19] apptainer version 1.4.5
[2026-02-19 13:13:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 13:13:19] julianvlneu
[2026-02-19 13:13:19] apptainer works
[2026-02-19 13:13:19] Set ATHENA_PROC_NUMBER=4
[2026-02-19 13:13:19] Set ATHENA_CORE_NUMBER=4
[2026-02-19 13:13:19] Starting ATLAS job with PandaID=7019797897
[2026-02-19 13:13:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-19 14:40:09]  *** The last 200 lines of the pilot log: ***
[2026-02-19 14:40:09]  status_code=0
[2026-02-19 14:40:09]  storage_token=
[2026-02-19 14:40:09]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7019797897/log.48508763._038214.job.log.tgz.1
[2026-02-19 14:40:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/1f/log.48508763._038214.job.log.tgz.1
[2026-02-19 14:40:09]  workdir=None
[2026-02-19 14:40:09] ]
[2026-02-19 14:40:09] 2026-02-19 13:39:18,630 | INFO     | transferring file log.48508763._038214.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7019797897/log.48508763._038214.job.log.tgz.1 to /var/li
[2026-02-19 14:40:09] 2026-02-19 13:39:18,630 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7019797897/log.48508763._038214.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-19 14:40:09] 2026-02-19 13:39:18,635 | INFO     | time since job start (5122s) is within the limit (349056.0s)
[2026-02-19 14:40:09] 2026-02-19 13:39:18,653 | INFO     | adding to output.list: log.48508763._038214.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/1f/log.48508763._038214.job.log.tg
[2026-02-19 14:40:09] 2026-02-19 13:39:18,654 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-19 14:40:09] 2026-02-19 13:39:18,654 | INFO     | summary of transferred files:
[2026-02-19 14:40:09] 2026-02-19 13:39:18,654 | INFO     |  -- lfn=log.48508763._038214.job.log.tgz.1, status_code=0, status=transferred
[2026-02-19 14:40:09] 2026-02-19 13:39:18,654 | INFO     | stage-out finished correctly
[2026-02-19 14:40:09] 2026-02-19 13:39:20,642 | INFO     | time since job start (5124s) is within the limit (349056.0s)
[2026-02-19 14:40:09] 2026-02-19 13:39:20,922 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-19 14:40:09] 2026-02-19 13:39:22,649 | INFO     | time since job start (5126s) is within the limit (349056.0s)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,604 | INFO     | job 7019797897 has state=finished
[2026-02-19 14:40:09] 2026-02-19 13:39:23,604 | INFO     | preparing for final server update for job 7019797897 in state='finished'
[2026-02-19 14:40:09] 2026-02-19 13:39:23,604 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7019797897/jobReport.json
[2026-02-19 14:40:09] 2026-02-19 13:39:23,606 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/1/workernode_map.json
[2026-02-19 14:40:09] 2026-02-19 13:39:23,606 | INFO     | this job has now completed (state=finished)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,606 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,606 | INFO     | log transfer has been attempted: DONE
[2026-02-19 14:40:09] 2026-02-19 13:39:23,606 | INFO     | job 7019797897 has finished - writing final server update
[2026-02-19 14:40:09] 2026-02-19 13:39:23,606 | INFO     | total number of processed events: 400 (read)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,608 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7019797897/memory_monitor_summary.json (trf name=prmon)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,608 | INFO     | extracted standard info from prmon json
[2026-02-19 14:40:09] 2026-02-19 13:39:23,608 | INFO     | extracted standard memory fields from prmon json
[2026-02-19 14:40:09] 2026-02-19 13:39:23,608 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-19 14:40:09] 2026-02-19 13:39:23,608 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-19 14:40:09] 2026-02-19 13:39:23,608 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | fitting pss+swap vs Time
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | sum of square deviations: 141539398.0
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | sum of deviations: -13042686452.0
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | mean x: 1771505885.0
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | mean y: 2621664.3766233767
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | intersect: 163244772842.15518
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | chi2: 0.1340195325302445
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | current memory leak: -92.15 B/s (using 77 data points, chi2=0.13)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | could have reported an average CPU frequency of 4399 MHz (6 samples)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | ..............................
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | . Timing measurements:
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | . get job = 0 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | . initial setup = 25 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | . payload setup = 8 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,609 | INFO     | . stage-in = 0 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,610 | INFO     | . payload execution = 5098 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,610 | INFO     | . stage-out = 0 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,610 | INFO     | . log creation = 0 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,610 | INFO     | ..............................
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | 
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | job summary report
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | --------------------------------------------------
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | PanDA job id: 7019797897
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | task id: 48508763
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | errors: (none)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | pilot state: finished 
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | transexitcode: 0
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | exeerrorcode: 0
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | exeerrordiag: 
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | exitcode: 0
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | exitmsg: OK
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | cpuconsumptiontime: 19275 s
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | nevents: 400
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | neventsw: 0
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | pid: 4157604
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | pgrp: 4157604
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | corecount: 4
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | event service: False
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | sizes: {0: 2282274, 10: 2282274, 5111: 2317599, 5114: 2317599, 5116: 2317793}
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | --------------------------------------------------
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | 
[2026-02-19 14:40:09] 2026-02-19 13:39:23,635 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2026-02-19 14:40:09] 2026-02-19 13:39:23,657 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,657 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,657 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | job 7019797897 has completed (purged errors)
[2026-02-19 14:40:09] 2026-02-19 13:39:23,658 | INFO     | overall cleanup function is called
[2026-02-19 14:40:09] 2026-02-19 13:39:24,533 | WARNING  | process 4157604 can no longer be monitored (due to stat problems) - aborting
[2026-02-19 14:40:09] 2026-02-19 13:39:24,613 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-19 14:40:09] 2026-02-19 13:39:24,614 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-19 14:40:09] 2026-02-19 13:39:24,614 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-19 14:40:09] 2026-02-19 13:39:24,614 | WARNING  | maxPSS not found in memory monitor output
[2026-02-19 14:40:09] 2026-02-19 13:39:24,615 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7019797897/payload.stdout) since it has not been created yet
[2026-02-19 14:40:09] 2026-02-19 13:39:24,615 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2026-02-19 14:40:09] 2026-02-19 13:39:24,632 | INFO     | sufficient remaining disk space (134617235456 B)
[2026-02-19 14:40:09] 2026-02-19 13:39:24,633 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-19 14:40:09] 2026-02-19 13:39:24,633 | INFO     | output file size check: skipping output file /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7019797897/HITS.48508763._038214.pool.root.1 since it does not exist
[2026-02-19 14:40:09] 2026-02-19 13:39:24,665 | INFO     | --- collectZombieJob: --- 10, [4157604]
[2026-02-19 14:40:09] 2026-02-19 13:39:24,665 | INFO     | zombie collector waiting for pid 4157604
[2026-02-19 14:40:09] 2026-02-19 13:39:24,665 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-19 14:40:09] 2026-02-19 13:39:24,665 | INFO     | collected zombie processes
[2026-02-19 14:40:09] 2026-02-19 13:39:24,665 | INFO     | will attempt to kill all subprocesses of pid=4157604
[2026-02-19 14:40:09] 2026-02-19 13:39:25,057 | INFO     | number of running child processes to parent process 4157604: 1
[2026-02-19 14:40:09] 2026-02-19 13:39:25,057 | INFO     | maximum number of monitored processes: 6
[2026-02-19 14:40:09] 2026-02-19 13:39:25,058 | INFO     | aborting job monitoring since job object (job id=7019797897) has expired
[2026-02-19 14:40:09] 2026-02-19 13:39:25,086 | INFO     | process IDs to be killed: [4157604] (in reverse order)
[2026-02-19 14:40:09] 2026-02-19 13:39:25,160 | WARNING  | found no corresponding commands to process id(s)
[2026-02-19 14:40:09] 2026-02-19 13:39:25,160 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-19 14:40:09] 2026-02-19 13:39:25,164 | INFO     | did not find any defunct processes belonging to 4157604
[2026-02-19 14:40:09] 2026-02-19 13:39:25,167 | INFO     | did not find any defunct processes belonging to 4157604
[2026-02-19 14:40:09] 2026-02-19 13:39:25,168 | INFO     | ready for new job
[2026-02-19 14:40:09] 2026-02-19 13:39:25,168 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-19 14:40:09] 2026-02-19 13:39:25,169 | INFO     | **************************************
[2026-02-19 14:40:09] 2026-02-19 13:39:25,169 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-19 14:40:09] 2026-02-19 13:39:25,169 | INFO     | **************************************
[2026-02-19 14:40:09] 2026-02-19 13:39:25,169 | INFO     | 
[2026-02-19 14:40:09] 2026-02-19 13:39:25,170 | INFO     | pilot is running in a VM
[2026-02-19 14:40:09] 2026-02-19 13:39:25,170 | INFO     | architecture information:
[2026-02-19 14:40:09] 2026-02-19 13:39:25,170 | INFO     | executing command: cat /etc/os-release
[2026-02-19 14:40:09] 2026-02-19 13:39:25,186 | INFO     | cat /etc/os-release:
[2026-02-19 14:40:09] NAME="CentOS Linux"
[2026-02-19 14:40:09] VERSION="7 (Core)"
[2026-02-19 14:40:09] ID="centos"
[2026-02-19 14:40:09] ID_LIKE="rhel fedora"
[2026-02-19 14:40:09] VERSION_ID="7"
[2026-02-19 14:40:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-19 14:40:09] ANSI_COLOR="0;31"
[2026-02-19 14:40:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-19 14:40:09] HOME_URL="https://www.centos.org/"
[2026-02-19 14:40:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-19 14:40:09] 
[2026-02-19 14:40:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-19 14:40:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-19 14:40:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-19 14:40:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-19 14:40:09] 
[2026-02-19 14:40:09] 2026-02-19 13:39:25,187 | INFO     | **************************************
[2026-02-19 14:40:09] 2026-02-19 13:39:25,691 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2026-02-19 14:40:09] 2026-02-19 13:39:25,706 | INFO     | sufficient remaining disk space (134617235456 B)
[2026-02-19 14:40:09] 2026-02-19 13:39:25,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-19 14:40:09] 2026-02-19 13:39:25,707 | INFO     | current server update state: UPDATING_FINAL
[2026-02-19 14:40:09] 2026-02-19 13:39:25,707 | INFO     | update_server=False
[2026-02-19 14:40:09] 2026-02-19 13:39:25,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-19 14:40:09] 2026-02-19 13:39:25,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-19 14:40:09] 2026-02-19 13:39:25,708 | INFO     | will abort loop
[2026-02-19 14:40:09] 2026-02-19 13:39:25,881 | INFO     | all data control threads have been joined
[2026-02-19 14:40:09] 2026-02-19 13:39:26,253 | INFO     | all payload control threads have been joined
[2026-02-19 14:40:09] 2026-02-19 13:39:26,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-19 14:40:09] 2026-02-19 13:39:26,712 | INFO     | [job] retrieve thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:26,713 | INFO     | [job] job monitor thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:26,781 | INFO     | [payload] validate_post thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:26,887 | INFO     | [data] control thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:26,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-19 14:40:09] 2026-02-19 13:39:27,259 | INFO     | [payload] control thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:27,338 | INFO     | all job control threads have been joined
[2026-02-19 14:40:09] 2026-02-19 13:39:27,382 | INFO     | [job] validate thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:27,413 | INFO     | [job] create_data_payload thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:27,586 | INFO     | [payload] validate_pre thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:27,693 | INFO     | [data] copytool_in thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:27,759 | INFO     | [payload] failed_post thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:27,763 | INFO     | [payload] execute_payloads thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:27,860 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:28,344 | INFO     | [job] control thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:28,647 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-19 14:40:09] 2026-02-19 13:39:28,712 | INFO     | [data] copytool_out thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:29,652 | INFO     | [job] queue monitor thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:30,963 | INFO     | [data] queue_monitor thread has finished
[2026-02-19 14:40:09] 2026-02-19 13:39:55,884 | INFO     | PID=4153062 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-19 14:40:09] 2026-02-19 13:39:55,884 | INFO     | .. there are 3 such processes running
[2026-02-19 14:40:09] 2026-02-19 13:39:55,885 | INFO     | found 0 job(s) in 20 queues
[2026-02-19 14:40:09] 2026-02-19 13:39:55,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-19 14:40:09] 2026-02-19 13:39:55,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-19 14:40:09] 2026-02-19 13:40:02,964 | INFO     | [monitor] cgroup control has ended
[2026-02-19 14:40:09] 2026-02-19 13:40:04,368 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123278963803968)>', '<ExcThread(monitor, started 123277993285376)>']
[2026-02-19 14:40:09] 2026-02-19 13:40:04,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-19 14:40:09] 2026-02-19 13:40:04,931 | INFO     | [monitor] control thread has ended
[2026-02-19 14:40:09] 2026-02-19 13:40:09,373 | INFO     | all workflow threads have been joined
[2026-02-19 14:40:09] 2026-02-19 13:40:09,373 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-19 14:40:09] 2026-02-19 13:40:09,374 | INFO     | traces error code: 0
[2026-02-19 14:40:09] 2026-02-19 13:40:09,374 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-19 14:40:09] 2026-02-19 13:40:09,459 [wrapper] ==== pilot stdout END ====
[2026-02-19 14:40:09] 2026-02-19 13:40:09,464 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-19 14:40:09] 2026-02-19 13:40:09,472 [wrapper] pilotpid: 4153062
[2026-02-19 14:40:09] 2026-02-19 13:40:09,479 [wrapper] Pilot exit status: 0
[2026-02-19 14:40:09] 2026-02-19 13:40:09,498 [wrapper] pandaids: 7019797897
[2026-02-19 14:40:09] 2026-02-19 13:40:09,548 [wrapper] cleanup supervisor_pilot 4183369 4153063
[2026-02-19 14:40:09] 2026-02-19 13:40:09,553 [wrapper] Test setup, not cleaning
[2026-02-19 14:40:09] 2026-02-19 13:40:09,559 [wrapper] apfmon messages muted
[2026-02-19 14:40:09] 2026-02-19 13:40:09,564 [wrapper] ==== wrapper stdout END ====
[2026-02-19 14:40:09] 2026-02-19 13:40:09,569 [wrapper] ==== wrapper stderr END ====
[2026-02-19 14:40:09]  *** Error codes and diagnostics ***
[2026-02-19 14:40:09]     "exeErrorCode": 0,
[2026-02-19 14:40:09]     "exeErrorDiag": "",
[2026-02-19 14:40:09]     "pilotErrorCode": 0,
[2026-02-19 14:40:09]     "pilotErrorDiag": "",
[2026-02-19 14:40:09]  *** Listing of results directory ***
[2026-02-19 14:40:09] insgesamt 948624
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc    584627 Feb 18 22:23 pilot3.tar.gz
[2026-02-19 14:40:09] -rwx------ 1 yeti boinc     36322 Feb 18 22:25 runpilot2-wrapper.sh
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc      5111 Feb 18 22:29 queuedata.json
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc       100 Feb 19 13:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-19 14:40:09] -rwxr-xr-x 1 yeti boinc      7986 Feb 19 13:13 run_atlas
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc       105 Feb 19 13:13 job.xml
[2026-02-19 14:40:09] -rw-r--r-- 2 yeti boinc 680227256 Feb 19 13:13 EVNT.48508760._000745.pool.root.1
[2026-02-19 14:40:09] drwxrwx--x 2 yeti boinc      4096 Feb 19 13:13 shared
[2026-02-19 14:40:09] -rw-r--r-- 2 yeti boinc    597955 Feb 19 13:13 input.tar.gz
[2026-02-19 14:40:09] -rw-r--r-- 2 yeti boinc     15845 Feb 19 13:13 start_atlas.sh
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc      6732 Feb 19 13:13 init_data.xml
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc         0 Feb 19 13:13 boinc_setup_complete
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc         0 Feb 19 13:13 boinc_lockfile
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc      2551 Feb 19 13:13 pandaJob.out
[2026-02-19 14:40:09] -rw------- 1 yeti boinc        52 Feb 19 13:13 setup.sh.local
[2026-02-19 14:40:09] -rw------- 1 yeti boinc   1001089 Feb 19 13:13 agis_schedconf.cvmfs.json
[2026-02-19 14:40:09] -rw------- 1 yeti boinc   1513015 Feb 19 13:13 agis_ddmendpoints.agis.ALL.json
[2026-02-19 14:40:09] -rw------- 1 yeti boinc       425 Feb 19 13:13 workernode_map.json
[2026-02-19 14:40:09] drwx------ 5 yeti boinc      4096 Feb 19 13:13 pilot3
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc       530 Feb 19 14:38 boinc_task_state.xml
[2026-02-19 14:40:09] -rw------- 1 yeti boinc 285131395 Feb 19 14:38 HITS.48508763._038214.pool.root.1
[2026-02-19 14:40:09] -rw------- 1 yeti boinc      1024 Feb 19 14:39 memory_monitor_summary.json
[2026-02-19 14:40:09] -rw------- 1 yeti boinc    275999 Feb 19 14:39 log.48508763._038214.job.log.tgz.1
[2026-02-19 14:40:09] -rw------- 1 yeti boinc      6300 Feb 19 14:39 heartbeat.json
[2026-02-19 14:40:09] -rw------- 1 yeti boinc        95 Feb 19 14:39 pilot_heartbeat.json
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc      8192 Feb 19 14:40 boinc_mmap_file
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc        27 Feb 19 14:40 wrapper_checkpoint.txt
[2026-02-19 14:40:09] -rw------- 1 yeti boinc      4898 Feb 19 14:40 pilotlog.txt
[2026-02-19 14:40:09] -rw------- 1 yeti boinc    767070 Feb 19 14:40 log.48508763._038214.job.log.1
[2026-02-19 14:40:09] -rw------- 1 yeti boinc       357 Feb 19 14:40 output.list
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc       620 Feb 19 14:40 runtime_log
[2026-02-19 14:40:09] -rw------- 1 yeti boinc   1064960 Feb 19 14:40 result.tar.gz
[2026-02-19 14:40:09] -rw------- 1 yeti boinc       640 Feb 19 14:40 ziJMDmAE4C9n9Rq4apOajLDm4fhM0noT9bVooX4SDmOWvKDmnz07Im.diag
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc      9556 Feb 19 14:40 runtime_log.err
[2026-02-19 14:40:09] -rw-r--r-- 1 yeti boinc     22073 Feb 19 14:40 stderr.txt
[2026-02-19 14:40:09] HITS file was successfully produced:
[2026-02-19 14:40:09] -rw------- 1 yeti boinc 285131395 Feb 19 14:38 shared/HITS.pool.root.1
[2026-02-19 14:40:09]  *** Contents of shared directory: ***
[2026-02-19 14:40:09] insgesamt 944388
[2026-02-19 14:40:09] -rw-r--r-- 2 yeti boinc 680227256 Feb 19 13:13 ATLAS.root_0
[2026-02-19 14:40:09] -rw-r--r-- 2 yeti boinc    597955 Feb 19 13:13 input.tar.gz
[2026-02-19 14:40:09] -rw-r--r-- 2 yeti boinc     15845 Feb 19 13:13 start_atlas.sh
[2026-02-19 14:40:09] -rw------- 1 yeti boinc 285131395 Feb 19 14:38 HITS.pool.root.1
[2026-02-19 14:40:09] -rw------- 1 yeti boinc   1064960 Feb 19 14:40 result.tar.gz
14:40:11 (4149204): run_atlas exited; CPU time 19415.794165
14:40:11 (4149204): called boinc_finish(0)

</stderr_txt>
]]>

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