Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:14:26 (2108181): wrapper (7.7.26015): starting
19:14:26 (2108181): wrapper: running run_atlas (--nthreads 4)
[2026-02-19 19:14:26] Arguments: --nthreads 4
[2026-02-19 19:14:26] Threads: 4
[2026-02-19 19:14:26] Checking for CVMFS
[2026-02-19 19:14:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 19:14:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 19:14:28] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 19:14:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 19:14:28] 2.9.2.0 1046581 6836 98224 156418 2 50 26862688 36864001 0 130560 0 2734163 99.984 232037 16843 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-19 19:14:28] CVMFS is ok
[2026-02-19 19:14:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 19:14:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 19:14:28] Further information can be found at the LHC@home message board.
[2026-02-19 19:14:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 19:14:28] Checking for apptainer binary...
[2026-02-19 19:14:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 19:14:28] Running /usr/bin/apptainer --version
[2026-02-19 19:14:28] apptainer version 1.4.1-1.1
[2026-02-19 19:14:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 19:14:28] thA309
[2026-02-19 19:14:28] apptainer works
[2026-02-19 19:14:28] Set ATHENA_PROC_NUMBER=4
[2026-02-19 19:14:28] Set ATHENA_CORE_NUMBER=4
[2026-02-19 19:14:28] Starting ATLAS job with PandaID=7019717378
[2026-02-19 19:14:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-19 20:59:55]  *** The last 200 lines of the pilot log: ***
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | job 7019717378 has completed (purged errors)
[2026-02-19 20:59:55] 2026-02-19 19:59:21,032 | INFO     | overall cleanup function is called
[2026-02-19 20:59:55] 2026-02-19 19:59:22,039 | INFO     | --- collectZombieJob: --- 10, [2116872]
[2026-02-19 20:59:55] 2026-02-19 19:59:22,039 | INFO     | zombie collector waiting for pid 2116872
[2026-02-19 20:59:55] 2026-02-19 19:59:22,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-19 20:59:55] 2026-02-19 19:59:22,040 | INFO     | collected zombie processes
[2026-02-19 20:59:55] 2026-02-19 19:59:22,040 | INFO     | will attempt to kill all subprocesses of pid=2116872
[2026-02-19 20:59:55] 2026-02-19 19:59:22,089 | INFO     | process IDs to be killed: [2116872] (in reverse order)
[2026-02-19 20:59:55] 2026-02-19 19:59:22,124 | WARNING  | found no corresponding commands to process id(s)
[2026-02-19 20:59:55] 2026-02-19 19:59:22,125 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-19 20:59:55] 2026-02-19 19:59:22,127 | INFO     | did not find any defunct processes belonging to 2116872
[2026-02-19 20:59:55] 2026-02-19 19:59:22,128 | INFO     | did not find any defunct processes belonging to 2116872
[2026-02-19 20:59:55] 2026-02-19 19:59:22,128 | INFO     | ready for new job
[2026-02-19 20:59:55] 2026-02-19 19:59:22,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-19 20:59:55] 2026-02-19 19:59:22,129 | INFO     | **************************************
[2026-02-19 20:59:55] 2026-02-19 19:59:22,129 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-19 20:59:55] 2026-02-19 19:59:22,129 | INFO     | **************************************
[2026-02-19 20:59:55] 2026-02-19 19:59:22,129 | INFO     | 
[2026-02-19 20:59:55] 2026-02-19 19:59:22,130 | INFO     | architecture information:
[2026-02-19 20:59:55] 2026-02-19 19:59:22,130 | INFO     | executing command: cat /etc/os-release
[2026-02-19 20:59:55] 2026-02-19 19:59:22,144 | INFO     | cat /etc/os-release:
[2026-02-19 20:59:55] NAME="CentOS Linux"
[2026-02-19 20:59:55] VERSION="7 (Core)"
[2026-02-19 20:59:55] ID="centos"
[2026-02-19 20:59:55] ID_LIKE="rhel fedora"
[2026-02-19 20:59:55] VERSION_ID="7"
[2026-02-19 20:59:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-19 20:59:55] ANSI_COLOR="0;31"
[2026-02-19 20:59:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-19 20:59:55] HOME_URL="https://www.centos.org/"
[2026-02-19 20:59:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-19 20:59:55] 
[2026-02-19 20:59:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-19 20:59:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-19 20:59:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-19 20:59:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-19 20:59:55] 
[2026-02-19 20:59:55] 2026-02-19 19:59:22,144 | INFO     | **************************************
[2026-02-19 20:59:55] 2026-02-19 19:59:22,647 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-19 20:59:55] 2026-02-19 19:59:22,665 | INFO     | sufficient remaining disk space (228529799168 B)
[2026-02-19 20:59:55] 2026-02-19 19:59:22,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-19 20:59:55] 2026-02-19 19:59:22,666 | INFO     | current server update state: UPDATING_FINAL
[2026-02-19 20:59:55] 2026-02-19 19:59:22,666 | INFO     | update_server=False
[2026-02-19 20:59:55] 2026-02-19 19:59:22,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-19 20:59:55] 2026-02-19 19:59:22,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-19 20:59:55] 2026-02-19 19:59:22,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-19 20:59:55] 2026-02-19 19:59:22,844 | INFO     | all payload control threads have been joined
[2026-02-19 20:59:55] 2026-02-19 19:59:23,053 | INFO     | all data control threads have been joined
[2026-02-19 20:59:55] 2026-02-19 19:59:23,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-19 20:59:55] 2026-02-19 19:59:23,323 | INFO     | aborting loop
[2026-02-19 20:59:55] 2026-02-19 19:59:23,671 | INFO     | [job] retrieve thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:23,712 | INFO     | [payload] validate_pre thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:23,718 | INFO     | [payload] validate_post thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:23,850 | INFO     | [payload] control thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:23,935 | INFO     | [data] copytool_in thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:23,968 | INFO     | all job control threads have been joined
[2026-02-19 20:59:55] 2026-02-19 19:59:24,059 | INFO     | [data] control thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:24,329 | INFO     | [job] job monitor thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:24,738 | INFO     | [data] copytool_out thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:24,743 | INFO     | [payload] failed_post thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:24,885 | INFO     | [payload] execute_payloads thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:24,974 | INFO     | [job] control thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:25,018 | INFO     | [job] validate thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:25,116 | INFO     | [job] create_data_payload thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:25,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-19 20:59:55] 2026-02-19 19:59:26,628 | INFO     | [job] queue monitor thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:26,672 | INFO     | [data] queue_monitor thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:33,703 | INFO     | job.realtimelogging is not enabled
[2026-02-19 20:59:55] 2026-02-19 19:59:34,709 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-19 20:59:55] 2026-02-19 19:59:36,364 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-02-19 20:59:55] 2026-02-19 19:59:48,782 | INFO     | [monitor] cgroup control has ended
[2026-02-19 20:59:55] 2026-02-19 19:59:50,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995123394368)>', '<ExcThread(monitor, started 139994106681088)>']
[2026-02-19 20:59:55] 2026-02-19 19:59:53,311 | INFO     | PID=2112321 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-19 20:59:55] 2026-02-19 19:59:53,311 | INFO     | found 0 job(s) in 20 queues
[2026-02-19 20:59:55] 2026-02-19 19:59:53,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-19 20:59:55] 2026-02-19 19:59:53,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-19 20:59:55] 2026-02-19 19:59:53,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-19 20:59:55] 2026-02-19 19:59:53,312 | INFO     | [monitor] control thread has ended
[2026-02-19 20:59:55] 2026-02-19 19:59:55,706 | INFO     | all workflow threads have been joined
[2026-02-19 20:59:55] 2026-02-19 19:59:55,706 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-19 20:59:55] 2026-02-19 19:59:55,706 | INFO     | traces error code: 0
[2026-02-19 20:59:55] 2026-02-19 19:59:55,706 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-19 20:59:55] 2026-02-19 19:59:55,786 [wrapper] ==== pilot stdout END ====
[2026-02-19 20:59:55] 2026-02-19 19:59:55,790 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-19 20:59:55] 2026-02-19 19:59:55,794 [wrapper] pilotpid: 2112321
[2026-02-19 20:59:55] 2026-02-19 19:59:55,799 [wrapper] Pilot exit status: 0
[2026-02-19 20:59:55] 2026-02-19 19:59:55,810 [wrapper] pandaids: 7019717378
[2026-02-19 20:59:55] 2026-02-19 19:59:55,834 [wrapper] cleanup supervisor_pilot 2128082 2112322
[2026-02-19 20:59:55] 2026-02-19 19:59:55,838 [wrapper] Test setup, not cleaning
[2026-02-19 20:59:55] 2026-02-19 19:59:55,842 [wrapper] apfmon messages muted
[2026-02-19 20:59:55] 2026-02-19 19:59:55,846 [wrapper] ==== wrapper stdout END ====
[2026-02-19 20:59:55] 2026-02-19 19:59:55,850 [wrapper] ==== wrapper stderr END ====
[2026-02-19 20:59:55]  *** Error codes and diagnostics ***
[2026-02-19 20:59:55]     "exeErrorCode": 0,
[2026-02-19 20:59:55]     "exeErrorDiag": "",
[2026-02-19 20:59:55]     "pilotErrorCode": 0,
[2026-02-19 20:59:55]     "pilotErrorDiag": "",
[2026-02-19 20:59:55]  *** Listing of results directory ***
[2026-02-19 20:59:55] total 933084
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc    584627 Feb 18 22:23 pilot3.tar.gz
[2026-02-19 20:59:55] -rwx------ 1 boinc boinc     36322 Feb 18 22:26 runpilot2-wrapper.sh
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc      5111 Feb 18 22:29 queuedata.json
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc       100 Feb 19 19:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-19 20:59:55] -rwxr-xr-x 1 boinc boinc      7986 Feb 19 19:14 run_atlas
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc       105 Feb 19 19:14 job.xml
[2026-02-19 20:59:55] -rw-r--r-- 2 boinc boinc 674253344 Feb 19 19:14 EVNT.48508760._000730.pool.root.1
[2026-02-19 20:59:55] -rw-r--r-- 2 boinc boinc    597957 Feb 19 19:14 input.tar.gz
[2026-02-19 20:59:55] -rw-r--r-- 2 boinc boinc     15845 Feb 19 19:14 start_atlas.sh
[2026-02-19 20:59:55] drwxrwx--x 2 boinc boinc      4096 Feb 19 19:14 shared
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc         0 Feb 19 19:14 boinc_setup_complete
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc      6377 Feb 19 19:14 init_data.xml
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc         0 Feb 19 19:14 boinc_lockfile
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc      2553 Feb 19 19:14 pandaJob.out
[2026-02-19 20:59:55] -rw------- 1 boinc boinc   1001575 Feb 19 19:14 agis_schedconf.cvmfs.json
[2026-02-19 20:59:55] -rw------- 1 boinc boinc   1513015 Feb 19 19:14 agis_ddmendpoints.agis.ALL.json
[2026-02-19 20:59:55] -rw------- 1 boinc boinc       421 Feb 19 19:14 workernode_map.json
[2026-02-19 20:59:55] drwx------ 5 boinc boinc      4096 Feb 19 19:14 pilot3
[2026-02-19 20:59:55] -rw------- 1 boinc boinc 274845199 Feb 19 20:58 HITS.48508763._037464.pool.root.1
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc       530 Feb 19 20:59 boinc_task_state.xml
[2026-02-19 20:59:55] -rw------- 1 boinc boinc        95 Feb 19 20:59 pilot_heartbeat.json
[2026-02-19 20:59:55] -rw------- 1 boinc boinc      1024 Feb 19 20:59 memory_monitor_summary.json
[2026-02-19 20:59:55] -rw------- 1 boinc boinc    322208 Feb 19 20:59 log.48508763._037464.job.log.tgz.1
[2026-02-19 20:59:55] -rw------- 1 boinc boinc      6314 Feb 19 20:59 heartbeat.json
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc      8192 Feb 19 20:59 boinc_mmap_file
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc        27 Feb 19 20:59 wrapper_checkpoint.txt
[2026-02-19 20:59:55] -rw------- 1 boinc boinc      4820 Feb 19 20:59 pilotlog.txt
[2026-02-19 20:59:55] -rw------- 1 boinc boinc    908056 Feb 19 20:59 log.48508763._037464.job.log.1
[2026-02-19 20:59:55] -rw------- 1 boinc boinc       357 Feb 19 20:59 output.list
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc       620 Feb 19 20:59 runtime_log
[2026-02-19 20:59:55] -rw------- 1 boinc boinc   1249280 Feb 19 20:59 result.tar.gz
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc      8896 Feb 19 20:59 runtime_log.err
[2026-02-19 20:59:55] -rw------- 1 boinc boinc       657 Feb 19 20:59 nOzNDmCF4C9n9Rq4apOajLDm4fhM0noT9bVooX4SDmsavKDmlTwd2m.diag
[2026-02-19 20:59:55] -rw-r--r-- 1 boinc boinc     12226 Feb 19 20:59 stderr.txt
[2026-02-19 20:59:55] HITS file was successfully produced:
[2026-02-19 20:59:55] -rw------- 1 boinc boinc 274845199 Feb 19 20:58 shared/HITS.pool.root.1
[2026-02-19 20:59:55]  *** Contents of shared directory: ***
[2026-02-19 20:59:55] total 928684
[2026-02-19 20:59:55] -rw-r--r-- 2 boinc boinc 674253344 Feb 19 19:14 ATLAS.root_0
[2026-02-19 20:59:55] -rw-r--r-- 2 boinc boinc    597957 Feb 19 19:14 input.tar.gz
[2026-02-19 20:59:55] -rw-r--r-- 2 boinc boinc     15845 Feb 19 19:14 start_atlas.sh
[2026-02-19 20:59:55] -rw------- 1 boinc boinc 274845199 Feb 19 20:58 HITS.pool.root.1
[2026-02-19 20:59:55] -rw------- 1 boinc boinc   1249280 Feb 19 20:59 result.tar.gz
20:59:57 (2108181): run_atlas exited; CPU time 23952.593804
20:59:57 (2108181): called boinc_finish(0)

</stderr_txt>
]]>

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