Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:01:05 (3278494): wrapper (7.7.26015): starting
08:01:05 (3278494): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 08:01:05] Arguments: --nthreads 4
[2026-02-20 08:01:05] Threads: 4
[2026-02-20 08:01:05] Checking for CVMFS
[2026-02-20 08:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 08:01:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 08:01:06] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 08:01:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 08:01:06] 2.9.2.0 532808 7739 99680 156438 1 50 33384597 36864000 0 130560 0 3057473 99.984 263396 13245 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-20 08:01:06] CVMFS is ok
[2026-02-20 08:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-20 08:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-20 08:01:06] Further information can be found at the LHC@home message board.
[2026-02-20 08:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 08:01:06] Checking for apptainer binary...
[2026-02-20 08:01:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 08:01:06] Running /usr/bin/apptainer --version
[2026-02-20 08:01:06] apptainer version 1.4.1-1.1
[2026-02-20 08:01:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 08:01:06] atlasA237
[2026-02-20 08:01:06] apptainer works
[2026-02-20 08:01:06] Set ATHENA_PROC_NUMBER=4
[2026-02-20 08:01:06] Set ATHENA_CORE_NUMBER=4
[2026-02-20 08:01:06] Starting ATLAS job with PandaID=7021103631
[2026-02-20 08:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 09:49:34]  *** The last 200 lines of the pilot log: ***
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,286 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,287 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 09:49:34] 2026-02-20 08:49:08,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,287 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 09:49:34] 2026-02-20 08:49:08,287 | INFO     | job 7021103631 has completed (purged errors)
[2026-02-20 09:49:34] 2026-02-20 08:49:08,287 | INFO     | overall cleanup function is called
[2026-02-20 09:49:34] 2026-02-20 08:49:09,294 | INFO     | --- collectZombieJob: --- 10, [3287267]
[2026-02-20 09:49:34] 2026-02-20 08:49:09,294 | INFO     | zombie collector waiting for pid 3287267
[2026-02-20 09:49:34] 2026-02-20 08:49:09,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 09:49:34] 2026-02-20 08:49:09,295 | INFO     | collected zombie processes
[2026-02-20 09:49:34] 2026-02-20 08:49:09,295 | INFO     | will attempt to kill all subprocesses of pid=3287267
[2026-02-20 09:49:34] 2026-02-20 08:49:09,364 | INFO     | process IDs to be killed: [3287267] (in reverse order)
[2026-02-20 09:49:34] 2026-02-20 08:49:09,405 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 09:49:34] 2026-02-20 08:49:09,405 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 09:49:34] 2026-02-20 08:49:09,408 | INFO     | did not find any defunct processes belonging to 3287267
[2026-02-20 09:49:34] 2026-02-20 08:49:09,411 | INFO     | did not find any defunct processes belonging to 3287267
[2026-02-20 09:49:34] 2026-02-20 08:49:09,411 | INFO     | ready for new job
[2026-02-20 09:49:34] 2026-02-20 08:49:09,411 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 09:49:34] 2026-02-20 08:49:09,411 | INFO     | **************************************
[2026-02-20 09:49:34] 2026-02-20 08:49:09,412 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 09:49:34] 2026-02-20 08:49:09,412 | INFO     | **************************************
[2026-02-20 09:49:34] 2026-02-20 08:49:09,412 | INFO     | 
[2026-02-20 09:49:34] 2026-02-20 08:49:09,412 | INFO     | architecture information:
[2026-02-20 09:49:34] 2026-02-20 08:49:09,412 | INFO     | executing command: cat /etc/os-release
[2026-02-20 09:49:34] 2026-02-20 08:49:09,426 | INFO     | cat /etc/os-release:
[2026-02-20 09:49:34] NAME="CentOS Linux"
[2026-02-20 09:49:34] VERSION="7 (Core)"
[2026-02-20 09:49:34] ID="centos"
[2026-02-20 09:49:34] ID_LIKE="rhel fedora"
[2026-02-20 09:49:34] VERSION_ID="7"
[2026-02-20 09:49:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 09:49:34] ANSI_COLOR="0;31"
[2026-02-20 09:49:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 09:49:34] HOME_URL="https://www.centos.org/"
[2026-02-20 09:49:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 09:49:34] 
[2026-02-20 09:49:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 09:49:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 09:49:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 09:49:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 09:49:34] 
[2026-02-20 09:49:34] 2026-02-20 08:49:09,426 | INFO     | **************************************
[2026-02-20 09:49:34] 2026-02-20 08:49:09,930 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 09:49:34] 2026-02-20 08:49:09,946 | INFO     | sufficient remaining disk space (320783515648 B)
[2026-02-20 09:49:34] 2026-02-20 08:49:09,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 09:49:34] 2026-02-20 08:49:09,946 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 09:49:34] 2026-02-20 08:49:09,946 | INFO     | update_server=False
[2026-02-20 09:49:34] 2026-02-20 08:49:09,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 09:49:34] 2026-02-20 08:49:09,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 09:49:34] 2026-02-20 08:49:09,947 | INFO     | aborting loop
[2026-02-20 09:49:34] 2026-02-20 08:49:09,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 09:49:34] 2026-02-20 08:49:09,947 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-20 09:49:34] 2026-02-20 08:49:09,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 09:49:34] 2026-02-20 08:49:09,947 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 09:49:34] 2026-02-20 08:49:09,948 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 09:49:34] 2026-02-20 08:49:09,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 09:49:34] 2026-02-20 08:49:09,994 | INFO     | all job control threads have been joined
[2026-02-20 09:49:34] 2026-02-20 08:49:10,215 | INFO     | all data control threads have been joined
[2026-02-20 09:49:34] 2026-02-20 08:49:10,591 | INFO     | all payload control threads have been joined
[2026-02-20 09:49:34] 2026-02-20 08:49:10,952 | INFO     | [job] job monitor thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:10,953 | INFO     | [job] retrieve thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:10,953 | INFO     | [job] queue monitor thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:10,999 | INFO     | [job] control thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:11,221 | INFO     | [data] control thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:11,597 | INFO     | [payload] control thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:11,680 | INFO     | [payload] failed_post thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:11,936 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:11,953 | INFO     | [data] copytool_out thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:12,053 | INFO     | [job] validate thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:12,067 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:12,250 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:12,378 | INFO     | [payload] validate_post thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:12,437 | INFO     | [data] copytool_in thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:12,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 09:49:34] 2026-02-20 08:49:16,560 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:20,691 | INFO     | job.realtimelogging is not enabled
[2026-02-20 09:49:34] 2026-02-20 08:49:21,696 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 09:49:34] 2026-02-20 08:49:27,154 | INFO     | [monitor] cgroup control has ended
[2026-02-20 09:49:34] 2026-02-20 08:49:29,210 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775722989376)>', '<ExcThread(monitor, started 139774987847424)>']
[2026-02-20 09:49:34] 2026-02-20 08:49:30,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 09:49:34] 2026-02-20 08:49:30,040 | INFO     | [monitor] control thread has ended
[2026-02-20 09:49:34] 2026-02-20 08:49:34,226 | INFO     | all workflow threads have been joined
[2026-02-20 09:49:34] 2026-02-20 08:49:34,227 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 09:49:34] 2026-02-20 08:49:34,227 | INFO     | traces error code: 0
[2026-02-20 09:49:34] 2026-02-20 08:49:34,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 09:49:34] 2026-02-20 08:49:34,296 [wrapper] ==== pilot stdout END ====
[2026-02-20 09:49:34] 2026-02-20 08:49:34,299 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 09:49:34] 2026-02-20 08:49:34,303 [wrapper] pilotpid: 3282652
[2026-02-20 09:49:34] 2026-02-20 08:49:34,307 [wrapper] Pilot exit status: 0
[2026-02-20 09:49:34] 2026-02-20 08:49:34,319 [wrapper] pandaids: 7021103631
[2026-02-20 09:49:34] 2026-02-20 08:49:34,346 [wrapper] cleanup supervisor_pilot 3327522 3282653
[2026-02-20 09:49:34] 2026-02-20 08:49:34,349 [wrapper] Test setup, not cleaning
[2026-02-20 09:49:34] 2026-02-20 08:49:34,353 [wrapper] apfmon messages muted
[2026-02-20 09:49:34] 2026-02-20 08:49:34,357 [wrapper] ==== wrapper stdout END ====
[2026-02-20 09:49:34] 2026-02-20 08:49:34,361 [wrapper] ==== wrapper stderr END ====
[2026-02-20 09:49:34]  *** Error codes and diagnostics ***
[2026-02-20 09:49:34]     "exeErrorCode": 0,
[2026-02-20 09:49:34]     "exeErrorDiag": "",
[2026-02-20 09:49:34]     "pilotErrorCode": 0,
[2026-02-20 09:49:34]     "pilotErrorDiag": "",
[2026-02-20 09:49:34]  *** Listing of results directory ***
[2026-02-20 09:49:34] total 940632
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc    584627 Feb 19 06:33 pilot3.tar.gz
[2026-02-20 09:49:34] -rwx------ 1 boinc boinc     36322 Feb 19 06:36 runpilot2-wrapper.sh
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc      5111 Feb 19 06:39 queuedata.json
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc       100 Feb 20 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 09:49:34] -rwxr-xr-x 1 boinc boinc      7986 Feb 20 08:01 run_atlas
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc       105 Feb 20 08:01 job.xml
[2026-02-20 09:49:34] -rw-r--r-- 2 boinc boinc 674147411 Feb 20 08:01 EVNT.48508760._000789.pool.root.1
[2026-02-20 09:49:34] drwxrwx--x 2 boinc boinc      4096 Feb 20 08:01 shared
[2026-02-20 09:49:34] -rw-r--r-- 2 boinc boinc    597954 Feb 20 08:01 input.tar.gz
[2026-02-20 09:49:34] -rw-r--r-- 2 boinc boinc     15845 Feb 20 08:01 start_atlas.sh
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc         0 Feb 20 08:01 boinc_setup_complete
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc      6371 Feb 20 08:01 init_data.xml
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc         0 Feb 20 08:01 boinc_lockfile
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc      2553 Feb 20 08:01 pandaJob.out
[2026-02-20 09:49:34] -rw------- 1 boinc boinc   1001567 Feb 20 08:01 agis_schedconf.cvmfs.json
[2026-02-20 09:49:34] -rw------- 1 boinc boinc   1513015 Feb 20 08:01 agis_ddmendpoints.agis.ALL.json
[2026-02-20 09:49:34] -rw------- 1 boinc boinc       430 Feb 20 08:01 workernode_map.json
[2026-02-20 09:49:34] drwx------ 5 boinc boinc      4096 Feb 20 08:01 pilot3
[2026-02-20 09:49:34] -rw------- 1 boinc boinc 282613754 Feb 20 09:48 HITS.48508763._041213.pool.root.1
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc       530 Feb 20 09:48 boinc_task_state.xml
[2026-02-20 09:49:34] -rw------- 1 boinc boinc        95 Feb 20 09:48 pilot_heartbeat.json
[2026-02-20 09:49:34] -rw------- 1 boinc boinc      1024 Feb 20 09:49 memory_monitor_summary.json
[2026-02-20 09:49:34] -rw------- 1 boinc boinc    325779 Feb 20 09:49 log.48508763._041213.job.log.tgz.1
[2026-02-20 09:49:34] -rw------- 1 boinc boinc      6348 Feb 20 09:49 heartbeat.json
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc      8192 Feb 20 09:49 boinc_mmap_file
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc        27 Feb 20 09:49 wrapper_checkpoint.txt
[2026-02-20 09:49:34] -rw------- 1 boinc boinc      4624 Feb 20 09:49 pilotlog.txt
[2026-02-20 09:49:34] -rw------- 1 boinc boinc    932255 Feb 20 09:49 log.48508763._041213.job.log.1
[2026-02-20 09:49:34] -rw------- 1 boinc boinc       357 Feb 20 09:49 output.list
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc       620 Feb 20 09:49 runtime_log
[2026-02-20 09:49:34] -rw------- 1 boinc boinc   1280000 Feb 20 09:49 result.tar.gz
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc      8911 Feb 20 09:49 runtime_log.err
[2026-02-20 09:49:34] -rw------- 1 boinc boinc       660 Feb 20 09:49 MGcLDmUtBD9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQ8vKDmBGrg7m.diag
[2026-02-20 09:49:34] -rw-r--r-- 1 boinc boinc     12467 Feb 20 09:49 stderr.txt
[2026-02-20 09:49:34] HITS file was successfully produced:
[2026-02-20 09:49:34] -rw------- 1 boinc boinc 282613754 Feb 20 09:48 shared/HITS.pool.root.1
[2026-02-20 09:49:34]  *** Contents of shared directory: ***
[2026-02-20 09:49:34] total 936200
[2026-02-20 09:49:34] -rw-r--r-- 2 boinc boinc 674147411 Feb 20 08:01 ATLAS.root_0
[2026-02-20 09:49:34] -rw-r--r-- 2 boinc boinc    597954 Feb 20 08:01 input.tar.gz
[2026-02-20 09:49:34] -rw-r--r-- 2 boinc boinc     15845 Feb 20 08:01 start_atlas.sh
[2026-02-20 09:49:34] -rw------- 1 boinc boinc 282613754 Feb 20 09:48 HITS.pool.root.1
[2026-02-20 09:49:34] -rw------- 1 boinc boinc   1280000 Feb 20 09:49 result.tar.gz
09:49:36 (3278494): run_atlas exited; CPU time 24635.507460
09:49:36 (3278494): called boinc_finish(0)

</stderr_txt>
]]>

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