Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:16:03 (60196): wrapper (7.7.26015): starting
21:16:03 (60196): wrapper: running run_atlas (--nthreads 3)
[2026-02-19 21:16:03] Arguments: --nthreads 3
[2026-02-19 21:16:03] Threads: 3
[2026-02-19 21:16:03] Checking for CVMFS
[2026-02-19 21:16:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 21:16:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 21:16:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 21:16:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 21:16:04] 2.9.2.0 3609891 4704 81736 156422 3 9 27988247 36864000 0 130560 0 1614002 99.980 183983 9463 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-19 21:16:04] CVMFS is ok
[2026-02-19 21:16:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 21:16:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 21:16:04] Further information can be found at the LHC@home message board.
[2026-02-19 21:16:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 21:16:04] Checking for apptainer binary...
[2026-02-19 21:16:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 21:16:04] Running /usr/bin/apptainer --version
[2026-02-19 21:16:04] apptainer version 1.4.1-1.1
[2026-02-19 21:16:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 21:16:04] magicA246a
[2026-02-19 21:16:04] apptainer works
[2026-02-19 21:16:04] Set ATHENA_PROC_NUMBER=3
[2026-02-19 21:16:04] Set ATHENA_CORE_NUMBER=3
[2026-02-19 21:16:04] Starting ATLAS job with PandaID=7020565480
[2026-02-19 21:16:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 14:54:29]  *** The last 200 lines of the pilot log: ***
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | job 7020565480 has completed (purged errors)
[2026-02-20 14:54:29] 2026-02-20 13:53:57,027 | INFO     | overall cleanup function is called
[2026-02-20 14:54:29] 2026-02-20 13:53:58,033 | INFO     | --- collectZombieJob: --- 10, [92717]
[2026-02-20 14:54:29] 2026-02-20 13:53:58,033 | INFO     | zombie collector waiting for pid 92717
[2026-02-20 14:54:29] 2026-02-20 13:53:58,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 14:54:29] 2026-02-20 13:53:58,034 | INFO     | collected zombie processes
[2026-02-20 14:54:29] 2026-02-20 13:53:58,034 | INFO     | will attempt to kill all subprocesses of pid=92717
[2026-02-20 14:54:29] 2026-02-20 13:53:58,090 | INFO     | process IDs to be killed: [92717] (in reverse order)
[2026-02-20 14:54:29] 2026-02-20 13:53:58,119 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 14:54:29] 2026-02-20 13:53:58,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 14:54:29] 2026-02-20 13:53:58,122 | INFO     | did not find any defunct processes belonging to 92717
[2026-02-20 14:54:29] 2026-02-20 13:53:58,123 | INFO     | did not find any defunct processes belonging to 92717
[2026-02-20 14:54:29] 2026-02-20 13:53:58,123 | INFO     | ready for new job
[2026-02-20 14:54:29] 2026-02-20 13:53:58,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 14:54:29] 2026-02-20 13:53:58,124 | INFO     | **************************************
[2026-02-20 14:54:29] 2026-02-20 13:53:58,124 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 14:54:29] 2026-02-20 13:53:58,124 | INFO     | **************************************
[2026-02-20 14:54:29] 2026-02-20 13:53:58,124 | INFO     | 
[2026-02-20 14:54:29] 2026-02-20 13:53:58,124 | INFO     | architecture information:
[2026-02-20 14:54:29] 2026-02-20 13:53:58,124 | INFO     | executing command: cat /etc/os-release
[2026-02-20 14:54:29] 2026-02-20 13:53:58,133 | INFO     | cat /etc/os-release:
[2026-02-20 14:54:29] NAME="CentOS Linux"
[2026-02-20 14:54:29] VERSION="7 (Core)"
[2026-02-20 14:54:29] ID="centos"
[2026-02-20 14:54:29] ID_LIKE="rhel fedora"
[2026-02-20 14:54:29] VERSION_ID="7"
[2026-02-20 14:54:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 14:54:29] ANSI_COLOR="0;31"
[2026-02-20 14:54:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 14:54:29] HOME_URL="https://www.centos.org/"
[2026-02-20 14:54:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 14:54:29] 
[2026-02-20 14:54:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 14:54:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 14:54:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 14:54:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 14:54:29] 
[2026-02-20 14:54:29] 2026-02-20 13:53:58,133 | INFO     | **************************************
[2026-02-20 14:54:29] 2026-02-20 13:53:58,636 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-20 14:54:29] 2026-02-20 13:53:58,648 | INFO     | sufficient remaining disk space (271514075136 B)
[2026-02-20 14:54:29] 2026-02-20 13:53:58,648 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 14:54:29] 2026-02-20 13:53:58,648 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 14:54:29] 2026-02-20 13:53:58,648 | INFO     | update_server=False
[2026-02-20 14:54:29] 2026-02-20 13:53:58,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 14:54:29] 2026-02-20 13:53:58,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 14:54:29] 2026-02-20 13:53:58,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 14:54:29] 2026-02-20 13:53:58,920 | INFO     | all data control threads have been joined
[2026-02-20 14:54:29] 2026-02-20 13:53:59,090 | INFO     | job.realtimelogging is not enabled
[2026-02-20 14:54:29] 2026-02-20 13:53:59,322 | INFO     | all payload control threads have been joined
[2026-02-20 14:54:29] 2026-02-20 13:53:59,394 | WARNING  | process 92717 can no longer be monitored (due to stat problems) - aborting
[2026-02-20 14:54:29] 2026-02-20 13:53:59,434 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 14:54:29] 2026-02-20 13:53:59,484 | INFO     | number of running child processes to parent process 92717: 1
[2026-02-20 14:54:29] 2026-02-20 13:53:59,484 | INFO     | maximum number of monitored processes: 6
[2026-02-20 14:54:29] 2026-02-20 13:53:59,484 | INFO     | aborting job monitoring since job object (job id=7020565480) has expired
[2026-02-20 14:54:29] 2026-02-20 13:53:59,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 14:54:29] 2026-02-20 13:53:59,485 | INFO     | will abort loop
[2026-02-20 14:54:29] 2026-02-20 13:53:59,551 | INFO     | all job control threads have been joined
[2026-02-20 14:54:29] 2026-02-20 13:53:59,654 | INFO     | [job] queue monitor thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:53:59,654 | INFO     | [job] retrieve thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:53:59,669 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:53:59,742 | INFO     | [data] copytool_in thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:53:59,834 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:53:59,926 | INFO     | [data] control thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:00,095 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:00,264 | INFO     | [payload] validate_post thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:00,326 | INFO     | [payload] control thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:00,489 | INFO     | [job] job monitor thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:00,555 | INFO     | [job] control thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:00,698 | INFO     | [data] copytool_out thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:00,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 14:54:29] 2026-02-20 13:54:00,984 | INFO     | [job] validate thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:01,061 | INFO     | [payload] failed_post thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:01,062 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:04,895 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 14:54:29] 2026-02-20 13:54:10,058 | INFO     | [monitor] cgroup control has ended
[2026-02-20 14:54:29] 2026-02-20 13:54:11,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140009565460288)>', '<ExcThread(monitor, started 140009080350464)>']
[2026-02-20 14:54:29] 2026-02-20 13:54:16,379 | INFO     | all workflow threads have been joined
[2026-02-20 14:54:29] 2026-02-20 13:54:16,379 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 14:54:29] 2026-02-20 13:54:16,380 | INFO     | traces error code: 0
[2026-02-20 14:54:29] 2026-02-20 13:54:16,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 14:54:29] 2026-02-20 13:54:28,979 | INFO     | PID=88248 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-20 14:54:29] 2026-02-20 13:54:28,979 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 14:54:29] 2026-02-20 13:54:28,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 14:54:29] 2026-02-20 13:54:28,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 14:54:29] 2026-02-20 13:54:28,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 14:54:29] 2026-02-20 13:54:28,979 | INFO     | [monitor] control thread has ended
[2026-02-20 14:54:29] 2026-02-20 13:54:29,029 [wrapper] ==== pilot stdout END ====
[2026-02-20 14:54:29] 2026-02-20 13:54:29,032 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 14:54:29] 2026-02-20 13:54:29,034 [wrapper] pilotpid: 88248
[2026-02-20 14:54:29] 2026-02-20 13:54:29,037 [wrapper] Pilot exit status: 0
[2026-02-20 14:54:29] 2026-02-20 13:54:29,044 [wrapper] pandaids: 7020565480
[2026-02-20 14:54:29] 2026-02-20 13:54:29,062 [wrapper] cleanup supervisor_pilot   99863 88249
[2026-02-20 14:54:29] 2026-02-20 13:54:29,065 [wrapper] Test setup, not cleaning
[2026-02-20 14:54:29] 2026-02-20 13:54:29,067 [wrapper] apfmon messages muted
[2026-02-20 14:54:29] 2026-02-20 13:54:29,069 [wrapper] ==== wrapper stdout END ====
[2026-02-20 14:54:29] 2026-02-20 13:54:29,072 [wrapper] ==== wrapper stderr END ====
[2026-02-20 14:54:29]  *** Error codes and diagnostics ***
[2026-02-20 14:54:29]     "exeErrorCode": 0,
[2026-02-20 14:54:29]     "exeErrorDiag": "",
[2026-02-20 14:54:29]     "pilotErrorCode": 0,
[2026-02-20 14:54:29]     "pilotErrorDiag": "",
[2026-02-20 14:54:29]  *** Listing of results directory ***
[2026-02-20 14:54:29] total 902108
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc    584627 Feb 18 22:23 pilot3.tar.gz
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc      5111 Feb 18 22:24 queuedata.json
[2026-02-20 14:54:29] -rwx------ 1 boinc boinc     36322 Feb 18 22:24 runpilot2-wrapper.sh
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc       100 Feb 19 21:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 14:54:29] -rwxr-xr-x 1 boinc boinc      7986 Feb 19 21:16 run_atlas
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc       105 Feb 19 21:16 job.xml
[2026-02-20 14:54:29] -rw-r--r-- 2 boinc boinc 658027834 Feb 19 21:16 EVNT.48431111._000228.pool.root.1
[2026-02-20 14:54:29] -rw-r--r-- 2 boinc boinc    597962 Feb 19 21:16 input.tar.gz
[2026-02-20 14:54:29] -rw-r--r-- 2 boinc boinc     15845 Feb 19 21:16 start_atlas.sh
[2026-02-20 14:54:29] drwxrwx--x 2 boinc boinc      4096 Feb 19 21:16 shared
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc         0 Feb 19 21:16 boinc_setup_complete
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc      6447 Feb 19 21:16 init_data.xml
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc         0 Feb 19 21:16 boinc_lockfile
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc      2547 Feb 19 21:16 pandaJob.out
[2026-02-20 14:54:29] -rw------- 1 boinc boinc   1001556 Feb 20 12:59 agis_schedconf.cvmfs.json
[2026-02-20 14:54:29] -rw------- 1 boinc boinc   1513015 Feb 20 12:59 agis_ddmendpoints.agis.ALL.json
[2026-02-20 14:54:29] -rw------- 1 boinc boinc       428 Feb 20 13:00 workernode_map.json
[2026-02-20 14:54:29] drwx------ 5 boinc boinc      4096 Feb 20 13:00 pilot3
[2026-02-20 14:54:29] -rw------- 1 boinc boinc 259240277 Feb 20 14:53 HITS.48431113._014414.pool.root.1
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc       531 Feb 20 14:53 boinc_task_state.xml
[2026-02-20 14:54:29] -rw------- 1 boinc boinc        95 Feb 20 14:53 pilot_heartbeat.json
[2026-02-20 14:54:29] -rw------- 1 boinc boinc      1023 Feb 20 14:53 memory_monitor_summary.json
[2026-02-20 14:54:29] -rw------- 1 boinc boinc    302145 Feb 20 14:53 log.48431113._014414.job.log.tgz.1
[2026-02-20 14:54:29] -rw------- 1 boinc boinc      6316 Feb 20 14:53 heartbeat.json
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc      8192 Feb 20 14:54 boinc_mmap_file
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc        28 Feb 20 14:54 wrapper_checkpoint.txt
[2026-02-20 14:54:29] -rw------- 1 boinc boinc       745 Feb 20 14:54 pilotlog.txt
[2026-02-20 14:54:29] -rw------- 1 boinc boinc    981915 Feb 20 14:54 log.48431113._014414.job.log.1
[2026-02-20 14:54:29] -rw------- 1 boinc boinc       357 Feb 20 14:54 output.list
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc       620 Feb 20 14:54 runtime_log
[2026-02-20 14:54:29] -rw------- 1 boinc boinc   1300480 Feb 20 14:54 result.tar.gz
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc      8917 Feb 20 14:54 runtime_log.err
[2026-02-20 14:54:29] -rw------- 1 boinc boinc       662 Feb 20 14:54 f8jLDmFD4C9n9Rq4apOajLDm4fhM0noT9bVooX4SDmoPvKDmeK2XOm.diag
[2026-02-20 14:54:29] -rw-r--r-- 1 boinc boinc     12323 Feb 20 14:54 stderr.txt
[2026-02-20 14:54:29] HITS file was successfully produced:
[2026-02-20 14:54:29] -rw------- 1 boinc boinc 259240277 Feb 20 14:53 shared/HITS.pool.root.1
[2026-02-20 14:54:29]  *** Contents of shared directory: ***
[2026-02-20 14:54:29] total 897656
[2026-02-20 14:54:29] -rw-r--r-- 2 boinc boinc 658027834 Feb 19 21:16 ATLAS.root_0
[2026-02-20 14:54:29] -rw-r--r-- 2 boinc boinc    597962 Feb 19 21:16 input.tar.gz
[2026-02-20 14:54:29] -rw-r--r-- 2 boinc boinc     15845 Feb 19 21:16 start_atlas.sh
[2026-02-20 14:54:29] -rw------- 1 boinc boinc 259240277 Feb 20 14:53 HITS.pool.root.1
[2026-02-20 14:54:29] -rw------- 1 boinc boinc   1300480 Feb 20 14:54 result.tar.gz
14:54:30 (60196): run_atlas exited; CPU time 19779.722941
14:54:30 (60196): called boinc_finish(0)

</stderr_txt>
]]>

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