Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
01:06:19 (343661): wrapper (7.7.26015): starting
01:06:19 (343661): wrapper: running run_atlas (--nthreads 4)
[2026-02-21 01:06:19] Arguments: --nthreads 4
[2026-02-21 01:06:19] Threads: 4
[2026-02-21 01:06:19] Checking for CVMFS
[2026-02-21 01:06:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-21 01:06:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-21 01:06:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-21 01:06:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-21 01:06:20] 2.13.3.0 11582 7221 46720 156463 0 49 28398706 33554432 0 130560 0 3612802 99.987 271194 247 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-21 01:06:20] CVMFS is ok
[2026-02-21 01:06:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-21 01:06:20] Checking for apptainer binary...
[2026-02-21 01:06:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-21 01:06:20] Running /usr/bin/apptainer --version
[2026-02-21 01:06:20] apptainer version 1.4.5
[2026-02-21 01:06:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-21 01:06:20] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-21 01:06:20] apptainer works
[2026-02-21 01:06:20] Set ATHENA_PROC_NUMBER=4
[2026-02-21 01:06:20] Set ATHENA_CORE_NUMBER=4
[2026-02-21 01:06:20] Starting ATLAS job with PandaID=7019603734
[2026-02-21 01:06:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-21 02:32:41]  *** The last 200 lines of the pilot log: ***
[2026-02-21 02:32:41]  guid=29ecbbff-973d-4842-bf19-b63839acdff1
[2026-02-21 02:32:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-21 02:32:41]  is_altstaged=None
[2026-02-21 02:32:41]  is_tar=False
[2026-02-21 02:32:41]  lfn=log.48508763._035577.job.log.tgz.1
[2026-02-21 02:32:41]  mtime=0
[2026-02-21 02:32:41]  protocol_id=None
[2026-02-21 02:32:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-21 02:32:41]  replicas=None
[2026-02-21 02:32:41]  scope=mc23_13p6TeV
[2026-02-21 02:32:41]  status=None
[2026-02-21 02:32:41]  status_code=0
[2026-02-21 02:32:41]  storage_token=
[2026-02-21 02:32:41]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7019603734/log.48508763._035577.job.log.tgz.1
[2026-02-21 02:32:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/a5/log.48508763._035577.job.log.tgz.1
[2026-02-21 02:32:41]  workdir=None
[2026-02-21 02:32:41] ]
[2026-02-21 02:32:41] 2026-02-21 00:31:57,304 | INFO     | transferring file log.48508763._035577.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7019603734/log.48508763._035577.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-21 02:32:41] 2026-02-21 00:31:57,304 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7019603734/log.48508763._035577.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48508763._035577.job
[2026-02-21 02:32:41] 2026-02-21 00:31:57,312 | INFO     | adding to output.list: log.48508763._035577.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/36/a5/log.48508763._035577.job.log.tg
[2026-02-21 02:32:41] 2026-02-21 00:31:57,313 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-21 02:32:41] 2026-02-21 00:31:57,313 | INFO     | summary of transferred files:
[2026-02-21 02:32:41] 2026-02-21 00:31:57,313 | INFO     |  -- lfn=log.48508763._035577.job.log.tgz.1, status_code=0, status=transferred
[2026-02-21 02:32:41] 2026-02-21 00:31:57,313 | INFO     | stage-out finished correctly
[2026-02-21 02:32:41] 2026-02-21 00:31:57,697 | INFO     | time since job start (5129s) is within the limit (349056.0s)
[2026-02-21 02:32:41] 2026-02-21 00:31:59,077 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-21 02:32:41] 2026-02-21 00:31:59,703 | INFO     | time since job start (5131s) is within the limit (349056.0s)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,672 | INFO     | job 7019603734 has state=finished
[2026-02-21 02:32:41] 2026-02-21 00:32:00,672 | INFO     | preparing for final server update for job 7019603734 in state='finished'
[2026-02-21 02:32:41] 2026-02-21 00:32:00,672 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7019603734/jobReport.json
[2026-02-21 02:32:41] 2026-02-21 00:32:00,673 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-21 02:32:41] 2026-02-21 00:32:00,673 | INFO     | this job has now completed (state=finished)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,673 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,673 | INFO     | log transfer has been attempted: DONE
[2026-02-21 02:32:41] 2026-02-21 00:32:00,673 | INFO     | job 7019603734 has finished - writing final server update
[2026-02-21 02:32:41] 2026-02-21 00:32:00,674 | INFO     | total number of processed events: 400 (read)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,675 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7019603734/memory_monitor_summary.json (trf name=prmon)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,676 | INFO     | extracted standard info from prmon json
[2026-02-21 02:32:41] 2026-02-21 00:32:00,676 | INFO     | extracted standard memory fields from prmon json
[2026-02-21 02:32:41] 2026-02-21 00:32:00,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-21 02:32:41] 2026-02-21 00:32:00,676 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-21 02:32:41] 2026-02-21 00:32:00,676 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-21 02:32:41] 2026-02-21 00:32:00,676 | INFO     | fitting pss+swap vs Time
[2026-02-21 02:32:41] 2026-02-21 00:32:00,677 | INFO     | sum of square deviations: 141539398.0
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | sum of deviations: -2305040550.0000005
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | mean x: 1771631427.0
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | mean y: 2416450.337662338
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | intersect: 28854328614.676285
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | chi2: 0.02402665169051345
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | current memory leak: -16.29 B/s (using 77 data points, chi2=0.02)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | could have reported an average CPU frequency of 3165 MHz (6 samples)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | ..............................
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . Timing measurements:
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . get job = 0 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . initial setup = 3 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . payload setup = 2 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . stage-in = 0 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . payload execution = 5111 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . stage-out = 0 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | . log creation = 0 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,678 | INFO     | ..............................
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | 
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | job summary report
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | --------------------------------------------------
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | PanDA job id: 7019603734
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | task id: 48508763
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | errors: (none)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | pilot state: finished 
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | transexitcode: 0
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | exeerrorcode: 0
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | exeerrordiag: 
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | exitcode: 0
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | exitmsg: OK
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | cpuconsumptiontime: 19511 s
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | nevents: 400
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | neventsw: 0
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | pid: 352136
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | pgrp: 352136
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | corecount: 4
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | event service: False
[2026-02-21 02:32:41] 2026-02-21 00:32:00,705 | INFO     | sizes: {0: 2281171, 1: 2282289, 11: 2282289, 5117: 2308820, 5118: 2317818, 5120: 2317874, 5122: 2318196}
[2026-02-21 02:32:41] 2026-02-21 00:32:00,706 | INFO     | --------------------------------------------------
[2026-02-21 02:32:41] 2026-02-21 00:32:00,706 | INFO     | 
[2026-02-21 02:32:41] 2026-02-21 00:32:00,706 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,714 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | job 7019603734 has completed (purged errors)
[2026-02-21 02:32:41] 2026-02-21 00:32:00,715 | INFO     | overall cleanup function is called
[2026-02-21 02:32:41] 2026-02-21 00:32:01,722 | INFO     | --- collectZombieJob: --- 10, [352136]
[2026-02-21 02:32:41] 2026-02-21 00:32:01,722 | INFO     | zombie collector waiting for pid 352136
[2026-02-21 02:32:41] 2026-02-21 00:32:01,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-21 02:32:41] 2026-02-21 00:32:01,722 | INFO     | collected zombie processes
[2026-02-21 02:32:41] 2026-02-21 00:32:01,722 | INFO     | will attempt to kill all subprocesses of pid=352136
[2026-02-21 02:32:41] 2026-02-21 00:32:01,934 | INFO     | process IDs to be killed: [352136] (in reverse order)
[2026-02-21 02:32:41] 2026-02-21 00:32:01,937 | WARNING  | process 352136 can no longer be monitored (due to stat problems) - aborting
[2026-02-21 02:32:41] 2026-02-21 00:32:01,967 | WARNING  | found no corresponding commands to process id(s)
[2026-02-21 02:32:41] 2026-02-21 00:32:01,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-21 02:32:41] 2026-02-21 00:32:01,974 | INFO     | did not find any defunct processes belonging to 352136
[2026-02-21 02:32:41] 2026-02-21 00:32:01,981 | INFO     | did not find any defunct processes belonging to 352136
[2026-02-21 02:32:41] 2026-02-21 00:32:01,981 | INFO     | ready for new job
[2026-02-21 02:32:41] 2026-02-21 00:32:01,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-21 02:32:41] 2026-02-21 00:32:01,982 | INFO     | **************************************
[2026-02-21 02:32:41] 2026-02-21 00:32:01,982 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-21 02:32:41] 2026-02-21 00:32:01,982 | INFO     | **************************************
[2026-02-21 02:32:41] 2026-02-21 00:32:01,982 | INFO     | 
[2026-02-21 02:32:41] 2026-02-21 00:32:01,983 | INFO     | architecture information:
[2026-02-21 02:32:41] 2026-02-21 00:32:01,983 | INFO     | executing command: cat /etc/os-release
[2026-02-21 02:32:41] 2026-02-21 00:32:01,990 | INFO     | cat /etc/os-release:
[2026-02-21 02:32:41] NAME="CentOS Linux"
[2026-02-21 02:32:41] VERSION="7 (Core)"
[2026-02-21 02:32:41] ID="centos"
[2026-02-21 02:32:41] ID_LIKE="rhel fedora"
[2026-02-21 02:32:41] VERSION_ID="7"
[2026-02-21 02:32:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-21 02:32:41] ANSI_COLOR="0;31"
[2026-02-21 02:32:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-21 02:32:41] HOME_URL="https://www.centos.org/"
[2026-02-21 02:32:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-21 02:32:41] 
[2026-02-21 02:32:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-21 02:32:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-21 02:32:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-21 02:32:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-21 02:32:41] 
[2026-02-21 02:32:41] 2026-02-21 00:32:01,990 | INFO     | **************************************
[2026-02-21 02:32:41] 2026-02-21 00:32:02,010 | INFO     | using path: /home/ek/BOINC/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-21 02:32:41] 2026-02-21 00:32:02,092 | INFO     | number of running child processes to parent process 352136: 1
[2026-02-21 02:32:41] 2026-02-21 00:32:02,092 | INFO     | maximum number of monitored processes: 6
[2026-02-21 02:32:41] 2026-02-21 00:32:02,092 | INFO     | aborting job monitoring since job object (job id=7019603734) has expired
[2026-02-21 02:32:41] 2026-02-21 00:32:02,492 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-21 02:32:41] 2026-02-21 00:32:02,499 | INFO     | sufficient remaining disk space (61127786496 B)
[2026-02-21 02:32:41] 2026-02-21 00:32:02,499 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-21 02:32:41] 2026-02-21 00:32:02,499 | INFO     | current server update state: UPDATING_FINAL
[2026-02-21 02:32:41] 2026-02-21 00:32:02,499 | INFO     | update_server=False
[2026-02-21 02:32:41] 2026-02-21 00:32:02,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-21 02:32:41] 2026-02-21 00:32:02,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-21 02:32:41] 2026-02-21 00:32:02,500 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-21 02:32:41] 2026-02-21 00:32:02,500 | INFO     | will abort loop
[2026-02-21 02:32:41] 2026-02-21 00:32:02,808 | INFO     | all data control threads have been joined
[2026-02-21 02:32:41] 2026-02-21 00:32:02,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-21 02:32:41] 2026-02-21 00:32:03,501 | INFO     | [job] queue monitor thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:03,505 | INFO     | [job] retrieve thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:03,505 | INFO     | [job] job monitor thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:03,627 | INFO     | all job control threads have been joined
[2026-02-21 02:32:41] 2026-02-21 00:32:03,786 | INFO     | all payload control threads have been joined
[2026-02-21 02:32:41] 2026-02-21 00:32:03,813 | INFO     | [data] control thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:03,863 | INFO     | [payload] validate_post thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,059 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,483 | INFO     | [job] validate thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,609 | INFO     | [payload] failed_post thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,632 | INFO     | [job] control thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,791 | INFO     | [payload] control thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,852 | INFO     | [data] copytool_out thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,937 | INFO     | [payload] execute_payloads thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,950 | INFO     | [payload] validate_pre thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,966 | INFO     | [job] create_data_payload thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:04,972 | INFO     | [data] copytool_in thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:05,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-21 02:32:41] 2026-02-21 00:32:09,114 | INFO     | [data] queue_monitor thread has finished
[2026-02-21 02:32:41] 2026-02-21 00:32:32,869 | INFO     | PID=347493 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-21 02:32:41] 2026-02-21 00:32:32,869 | INFO     | found 0 job(s) in 20 queues
[2026-02-21 02:32:41] 2026-02-21 00:32:32,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-21 02:32:41] 2026-02-21 00:32:32,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-21 02:32:41] 2026-02-21 00:32:35,001 | INFO     | [monitor] cgroup control has ended
[2026-02-21 02:32:41] 2026-02-21 00:32:36,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140576419743552)>', '<ExcThread(monitor, started 140575915353856)>']
[2026-02-21 02:32:41] 2026-02-21 00:32:36,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-21 02:32:41] 2026-02-21 00:32:36,888 | INFO     | [monitor] control thread has ended
[2026-02-21 02:32:41] 2026-02-21 00:32:41,124 | INFO     | all workflow threads have been joined
[2026-02-21 02:32:41] 2026-02-21 00:32:41,124 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-21 02:32:41] 2026-02-21 00:32:41,124 | INFO     | traces error code: 0
[2026-02-21 02:32:41] 2026-02-21 00:32:41,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-21 02:32:41] 2026-02-21 00:32:41,198 [wrapper] ==== pilot stdout END ====
[2026-02-21 02:32:41] 2026-02-21 00:32:41,200 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-21 02:32:41] 2026-02-21 00:32:41,202 [wrapper] pilotpid: 347493
[2026-02-21 02:32:41] 2026-02-21 00:32:41,203 [wrapper] Pilot exit status: 0
[2026-02-21 02:32:41] 2026-02-21 00:32:41,210 [wrapper] pandaids: 7019603734
[2026-02-21 02:32:41] 2026-02-21 00:32:41,232 [wrapper] cleanup supervisor_pilot  406651 347494
[2026-02-21 02:32:41] 2026-02-21 00:32:41,234 [wrapper] Test setup, not cleaning
[2026-02-21 02:32:41] 2026-02-21 00:32:41,235 [wrapper] apfmon messages muted
[2026-02-21 02:32:41] 2026-02-21 00:32:41,237 [wrapper] ==== wrapper stdout END ====
[2026-02-21 02:32:41] 2026-02-21 00:32:41,238 [wrapper] ==== wrapper stderr END ====
[2026-02-21 02:32:41]  *** Error codes and diagnostics ***
[2026-02-21 02:32:41]     "exeErrorCode": 0,
[2026-02-21 02:32:41]     "exeErrorDiag": "",
[2026-02-21 02:32:41]     "pilotErrorCode": 0,
[2026-02-21 02:32:41]     "pilotErrorDiag": "",
[2026-02-21 02:32:41]  *** Listing of results directory ***
[2026-02-21 02:32:41] total 947888
[2026-02-21 02:32:41] -rw-r--r-- 1 ek ek    584627 Feb 18 18:25 pilot3.tar.gz
[2026-02-21 02:32:41] -rwx------ 1 ek ek     36322 Feb 18 18:26 runpilot2-wrapper.sh
[2026-02-21 02:32:41] -rw-r--r-- 1 ek ek      5111 Feb 18 18:28 queuedata.json
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek       100 Feb 21 01:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-21 02:32:41] -rwxr-xr-x 1 ek ek      7986 Feb 21 01:06 run_atlas
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek       105 Feb 21 01:06 job.xml
[2026-02-21 02:32:41] -rw-r--r-- 2 ek ek 681398170 Feb 21 01:06 EVNT.48508760._000694.pool.root.1
[2026-02-21 02:32:41] -rw-r--r-- 2 ek ek    597957 Feb 21 01:06 input.tar.gz
[2026-02-21 02:32:41] -rw-r--r-- 2 ek ek     15845 Feb 21 01:06 start_atlas.sh
[2026-02-21 02:32:41] drwxrwx--x 2 ek ek      4096 Feb 21 01:06 shared
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek         0 Feb 21 01:06 boinc_setup_complete
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek      9842 Feb 21 01:06 init_data.xml
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek         0 Feb 21 01:06 boinc_lockfile
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek      2552 Feb 21 01:06 pandaJob.out
[2026-02-21 02:32:41] -rw------- 1 ek ek        50 Feb 21 01:06 setup.sh.local
[2026-02-21 02:32:41] -rw------- 1 ek ek   1001572 Feb 21 01:06 agis_schedconf.cvmfs.json
[2026-02-21 02:32:41] -rw------- 1 ek ek   1513015 Feb 21 01:06 agis_ddmendpoints.agis.ALL.json
[2026-02-21 02:32:41] -rw------- 1 ek ek       432 Feb 21 01:06 workernode_map.json
[2026-02-21 02:32:41] drwx------ 5 ek ek      4096 Feb 21 01:06 pilot3
[2026-02-21 02:32:41] -rw------- 1 ek ek 283257247 Feb 21 02:31 HITS.48508763._035577.pool.root.1
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek       530 Feb 21 02:31 boinc_task_state.xml
[2026-02-21 02:32:41] -rw------- 1 ek ek      1067 Feb 21 02:31 memory_monitor_summary.json
[2026-02-21 02:32:41] -rw------- 1 ek ek    275009 Feb 21 02:31 log.48508763._035577.job.log.tgz.1
[2026-02-21 02:32:41] -rw------- 1 ek ek      6383 Feb 21 02:32 heartbeat.json
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek      8192 Feb 21 02:32 boinc_mmap_file
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek        27 Feb 21 02:32 wrapper_checkpoint.txt
[2026-02-21 02:32:41] -rw------- 1 ek ek        95 Feb 21 02:32 pilot_heartbeat.json
[2026-02-21 02:32:41] -rw------- 1 ek ek      5149 Feb 21 02:32 pilotlog.txt
[2026-02-21 02:32:41] -rw------- 1 ek ek    746262 Feb 21 02:32 log.48508763._035577.job.log.1
[2026-02-21 02:32:41] -rw------- 1 ek ek       357 Feb 21 02:32 output.list
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek       620 Feb 21 02:32 runtime_log
[2026-02-21 02:32:41] -rw------- 1 ek ek   1034240 Feb 21 02:32 result.tar.gz
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek      9501 Feb 21 02:32 runtime_log.err
[2026-02-21 02:32:41] -rw------- 1 ek ek       670 Feb 21 02:32 aYgLDmCZzC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmo7uKDmdMRCLo.diag
[2026-02-21 02:32:41] -rw-rw-r-- 1 ek ek     21244 Feb 21 02:32 stderr.txt
[2026-02-21 02:32:41] HITS file was successfully produced:
[2026-02-21 02:32:41] -rw------- 1 ek ek 283257247 Feb 21 02:31 shared/HITS.pool.root.1
[2026-02-21 02:32:41]  *** Contents of shared directory: ***
[2026-02-21 02:32:41] total 943668
[2026-02-21 02:32:41] -rw-r--r-- 2 ek ek 681398170 Feb 21 01:06 ATLAS.root_0
[2026-02-21 02:32:41] -rw-r--r-- 2 ek ek    597957 Feb 21 01:06 input.tar.gz
[2026-02-21 02:32:41] -rw-r--r-- 2 ek ek     15845 Feb 21 01:06 start_atlas.sh
[2026-02-21 02:32:41] -rw------- 1 ek ek 283257247 Feb 21 02:31 HITS.pool.root.1
[2026-02-21 02:32:41] -rw------- 1 ek ek   1034240 Feb 21 02:32 result.tar.gz
02:32:43 (343661): run_atlas exited; CPU time 19556.582986
02:32:43 (343661): called boinc_finish(0)

</stderr_txt>
]]>

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