Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:44:27 (29714): wrapper (7.7.26015): starting
01:44:27 (29714): wrapper: running run_atlas (--nthreads 8)
[2026-02-19 01:44:27] Arguments: --nthreads 8
[2026-02-19 01:44:27] Threads: 8
[2026-02-19 01:44:27] Checking for CVMFS
[2026-02-19 01:44:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 01:44:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 01:44:27] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 01:44:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 01:44:27] 2.11.0.0 5431 187852 72824 156388 3 1 3892482 4096000 0 130560 2 7032979 99.538 9380962 410 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-19 01:44:27] CVMFS is ok
[2026-02-19 01:44:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 01:44:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 01:44:27] Further information can be found at the LHC@home message board.
[2026-02-19 01:44:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 01:44:27] Checking for apptainer binary...
[2026-02-19 01:44:27] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-19 01:44:27] apptainer is not installed, using version from CVMFS
[2026-02-19 01:44:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 01:44:27] WARNING: Environment variable TMPDIR already has value [/tmp/job_11166497/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node293
[2026-02-19 01:44:27] apptainer works
[2026-02-19 01:44:27] Set ATHENA_PROC_NUMBER=8
[2026-02-19 01:44:27] Set ATHENA_CORE_NUMBER=8
[2026-02-19 01:44:27] Starting ATLAS job with PandaID=7017439058
[2026-02-19 01:44:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11166497/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-19 02:54:46]  *** The last 200 lines of the pilot log: ***
[2026-02-19 02:54:46]  filetype=log
[2026-02-19 02:54:46]  guid=45061685-2e64-4631-87d1-b4a9617c0540
[2026-02-19 02:54:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-19 02:54:46]  is_altstaged=None
[2026-02-19 02:54:46]  is_tar=False
[2026-02-19 02:54:46]  lfn=log.48610894._001590.job.log.tgz.1
[2026-02-19 02:54:46]  mtime=0
[2026-02-19 02:54:46]  protocol_id=None
[2026-02-19 02:54:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-19 02:54:46]  replicas=None
[2026-02-19 02:54:46]  scope=mc23_13p6TeV
[2026-02-19 02:54:46]  status=None
[2026-02-19 02:54:46]  status_code=0
[2026-02-19 02:54:46]  storage_token=
[2026-02-19 02:54:46]  surl=/tmp/job_11166497/atlas/pilot/slots/0/PanDA_Pilot-7017439058/log.48610894._001590.job.log.tgz.1
[2026-02-19 02:54:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/64/log.48610894._001590.job.log.tgz.1
[2026-02-19 02:54:46]  workdir=None
[2026-02-19 02:54:46] ]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,018 | INFO     | transferring file log.48610894._001590.job.log.tgz.1 from /tmp/job_11166497/atlas/pilot/slots/0/PanDA_Pilot-7017439058/log.48610894._001590.job.log.tgz.1 to /tmp/j
[2026-02-19 02:54:46] 2026-02-19 01:54:07,018 | INFO     | executing command: /usr/bin/env mv /tmp/job_11166497/atlas/pilot/slots/0/PanDA_Pilot-7017439058/log.48610894._001590.job.log.tgz.1 /tmp/job_11166497/atlas/pilot/sl
[2026-02-19 02:54:46] 2026-02-19 01:54:07,025 | INFO     | adding to output.list: log.48610894._001590.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/62/64/log.48610894._001590.job.log.tg
[2026-02-19 02:54:46] 2026-02-19 01:54:07,026 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-19 02:54:46] 2026-02-19 01:54:07,026 | INFO     | summary of transferred files:
[2026-02-19 02:54:46] 2026-02-19 01:54:07,026 | INFO     |  -- lfn=log.48610894._001590.job.log.tgz.1, status_code=0, status=transferred
[2026-02-19 02:54:46] 2026-02-19 01:54:07,026 | INFO     | stage-out finished correctly
[2026-02-19 02:54:46] 2026-02-19 01:54:07,134 | INFO     | time since job start (4172s) is within the limit (349056.0s)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,508 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-19 02:54:46] 2026-02-19 01:54:07,554 | INFO     | job 7017439058 has state=finished
[2026-02-19 02:54:46] 2026-02-19 01:54:07,554 | INFO     | preparing for final server update for job 7017439058 in state='finished'
[2026-02-19 02:54:46] 2026-02-19 01:54:07,554 | INFO     | reading metadata from: /tmp/job_11166497/atlas/pilot/slots/0/PanDA_Pilot-7017439058/jobReport.json
[2026-02-19 02:54:46] 2026-02-19 01:54:07,555 | INFO     | added worker_node to metadata from /tmp/job_11166497/atlas/pilot/slots/0/workernode_map.json
[2026-02-19 02:54:46] 2026-02-19 01:54:07,555 | INFO     | this job has now completed (state=finished)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,555 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,555 | INFO     | log transfer has been attempted: DONE
[2026-02-19 02:54:46] 2026-02-19 01:54:07,555 | INFO     | job 7017439058 has finished - writing final server update
[2026-02-19 02:54:46] 2026-02-19 01:54:07,555 | INFO     | total number of processed events: 400 (read)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,572 | INFO     | using path: /tmp/job_11166497/atlas/pilot/slots/0/PanDA_Pilot-7017439058/memory_monitor_summary.json (trf name=prmon)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,573 | INFO     | extracted standard info from prmon json
[2026-02-19 02:54:46] 2026-02-19 01:54:07,573 | INFO     | extracted standard memory fields from prmon json
[2026-02-19 02:54:46] 2026-02-19 01:54:07,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-19 02:54:46] 2026-02-19 01:54:07,573 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-19 02:54:46] 2026-02-19 01:54:07,573 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | fitting pss+swap vs Time
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | sum of square deviations: 73882315.5
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | sum of deviations: -11875960039.5
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | mean x: 1771464056.5
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | mean y: 2762874.8225806453
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | intersect: 284750692119.1973
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | chi2: 0.1041452499363898
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | current memory leak: -160.74 B/s (using 62 data points, chi2=0.10)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | could have reported an average CPU frequency of 2365 MHz (6 samples)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | ..............................
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | . Timing measurements:
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | . get job = 0 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | . initial setup = 2 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | . payload setup = 2 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,574 | INFO     | . stage-in = 0 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,575 | INFO     | . payload execution = 4154 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,575 | INFO     | . stage-out = 0 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,575 | INFO     | . log creation = 0 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,575 | INFO     | ..............................
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | 
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | job summary report
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | --------------------------------------------------
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | PanDA job id: 7017439058
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | task id: 48610894
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | errors: (none)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | pilot state: finished 
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | transexitcode: 0
[2026-02-19 02:54:46] 2026-02-19 01:54:07,621 | INFO     | exeerrorcode: 0
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | exeerrordiag: 
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | exitcode: 0
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | exitmsg: OK
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | cpuconsumptiontime: 27143 s
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | nevents: 400
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | neventsw: 0
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | pid: 5893
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | pgrp: 5893
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | corecount: 8
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | event service: False
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | sizes: {0: 2281872, 1: 2282444, 11: 2282444, 4160: 2308481, 4161: 2317509, 4162: 2317887}
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | --------------------------------------------------
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | 
[2026-02-19 02:54:46] 2026-02-19 01:54:07,622 | INFO     | executing command: ls -lF /tmp/job_11166497/atlas/pilot/slots/0
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | job 7017439058 has completed (purged errors)
[2026-02-19 02:54:46] 2026-02-19 01:54:07,632 | INFO     | overall cleanup function is called
[2026-02-19 02:54:46] 2026-02-19 01:54:08,638 | INFO     | --- collectZombieJob: --- 10, [5893]
[2026-02-19 02:54:46] 2026-02-19 01:54:08,638 | INFO     | zombie collector waiting for pid 5893
[2026-02-19 02:54:46] 2026-02-19 01:54:08,638 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-19 02:54:46] 2026-02-19 01:54:08,638 | INFO     | collected zombie processes
[2026-02-19 02:54:46] 2026-02-19 01:54:08,638 | INFO     | will attempt to kill all subprocesses of pid=5893
[2026-02-19 02:54:46] 2026-02-19 01:54:08,730 | INFO     | process IDs to be killed: [5893] (in reverse order)
[2026-02-19 02:54:46] 2026-02-19 01:54:08,761 | WARNING  | found no corresponding commands to process id(s)
[2026-02-19 02:54:46] 2026-02-19 01:54:08,761 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-19 02:54:46] 2026-02-19 01:54:08,765 | INFO     | did not find any defunct processes belonging to 5893
[2026-02-19 02:54:46] 2026-02-19 01:54:08,767 | INFO     | did not find any defunct processes belonging to 5893
[2026-02-19 02:54:46] 2026-02-19 01:54:08,768 | INFO     | ready for new job
[2026-02-19 02:54:46] 2026-02-19 01:54:08,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-19 02:54:46] 2026-02-19 01:54:08,768 | INFO     | **************************************
[2026-02-19 02:54:46] 2026-02-19 01:54:08,768 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-19 02:54:46] 2026-02-19 01:54:08,768 | INFO     | **************************************
[2026-02-19 02:54:46] 2026-02-19 01:54:08,768 | INFO     | 
[2026-02-19 02:54:46] 2026-02-19 01:54:08,783 | INFO     | architecture information:
[2026-02-19 02:54:46] 2026-02-19 01:54:08,783 | INFO     | executing command: cat /etc/os-release
[2026-02-19 02:54:46] 2026-02-19 01:54:08,789 | INFO     | cat /etc/os-release:
[2026-02-19 02:54:46] NAME="CentOS Linux"
[2026-02-19 02:54:46] VERSION="7 (Core)"
[2026-02-19 02:54:46] ID="centos"
[2026-02-19 02:54:46] ID_LIKE="rhel fedora"
[2026-02-19 02:54:46] VERSION_ID="7"
[2026-02-19 02:54:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-19 02:54:46] ANSI_COLOR="0;31"
[2026-02-19 02:54:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-19 02:54:46] HOME_URL="https://www.centos.org/"
[2026-02-19 02:54:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-19 02:54:46] 
[2026-02-19 02:54:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-19 02:54:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-19 02:54:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-19 02:54:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-19 02:54:46] 
[2026-02-19 02:54:46] 2026-02-19 01:54:08,790 | INFO     | **************************************
[2026-02-19 02:54:46] 2026-02-19 01:54:09,291 | INFO     | executing command: df -mP /tmp/job_11166497/atlas/pilot/slots/0
[2026-02-19 02:54:46] 2026-02-19 01:54:09,297 | INFO     | sufficient remaining disk space (221603954688 B)
[2026-02-19 02:54:46] 2026-02-19 01:54:09,297 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-19 02:54:46] 2026-02-19 01:54:09,297 | INFO     | current server update state: UPDATING_FINAL
[2026-02-19 02:54:46] 2026-02-19 01:54:09,297 | INFO     | update_server=False
[2026-02-19 02:54:46] 2026-02-19 01:54:09,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-19 02:54:46] 2026-02-19 01:54:09,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-19 02:54:46] 2026-02-19 01:54:09,298 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-19 02:54:46] 2026-02-19 01:54:09,651 | INFO     | all data control threads have been joined
[2026-02-19 02:54:46] 2026-02-19 01:54:09,991 | INFO     | all job control threads have been joined
[2026-02-19 02:54:46] 2026-02-19 01:54:10,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-19 02:54:46] 2026-02-19 01:54:10,303 | INFO     | [job] retrieve thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,303 | INFO     | [job] queue monitor thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,433 | INFO     | [payload] validate_post thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,626 | INFO     | all payload control threads have been joined
[2026-02-19 02:54:46] 2026-02-19 01:54:10,656 | INFO     | [data] control thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,809 | INFO     | [payload] validate_pre thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,816 | INFO     | [payload] failed_post thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,880 | INFO     | [job] create_data_payload thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,893 | INFO     | [job] validate thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:10,996 | INFO     | [job] control thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:11,074 | INFO     | [data] copytool_in thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:11,547 | INFO     | [payload] execute_payloads thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:11,631 | INFO     | [payload] control thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:11,743 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:11,859 | WARNING  | process 5893 can no longer be monitored (due to stat problems) - aborting
[2026-02-19 02:54:46] 2026-02-19 01:54:11,931 | INFO     | using path: /tmp/job_11166497/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-19 02:54:46] 2026-02-19 01:54:12,017 | INFO     | number of running child processes to parent process 5893: 1
[2026-02-19 02:54:46] 2026-02-19 01:54:12,017 | INFO     | maximum number of monitored processes: 6
[2026-02-19 02:54:46] 2026-02-19 01:54:12,017 | INFO     | aborting job monitoring since job object (job id=7017439058) has expired
[2026-02-19 02:54:46] 2026-02-19 01:54:12,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-19 02:54:46] 2026-02-19 01:54:12,017 | INFO     | will abort loop
[2026-02-19 02:54:46] 2026-02-19 01:54:12,089 | INFO     | [data] copytool_out thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:13,022 | INFO     | [job] job monitor thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:13,303 | INFO     | [data] queue_monitor thread has finished
[2026-02-19 02:54:46] 2026-02-19 01:54:40,310 | INFO     | PID=1233 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-19 02:54:46] 2026-02-19 01:54:40,310 | INFO     | found 0 job(s) in 20 queues
[2026-02-19 02:54:46] 2026-02-19 01:54:40,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-19 02:54:46] 2026-02-19 01:54:40,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-19 02:54:46] 2026-02-19 01:54:40,923 | INFO     | [monitor] cgroup control has ended
[2026-02-19 02:54:46] 2026-02-19 01:54:41,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-19 02:54:46] 2026-02-19 01:54:41,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-19 02:54:46] 2026-02-19 01:54:41,315 | INFO     | [monitor] control thread has ended
[2026-02-19 02:54:46] 2026-02-19 01:54:46,054 | INFO     | all workflow threads have been joined
[2026-02-19 02:54:46] 2026-02-19 01:54:46,054 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-19 02:54:46] 2026-02-19 01:54:46,054 | INFO     | traces error code: 0
[2026-02-19 02:54:46] 2026-02-19 01:54:46,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-19 02:54:46] 2026-02-19 01:54:46,108 [wrapper] ==== pilot stdout END ====
[2026-02-19 02:54:46] 2026-02-19 01:54:46,109 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-19 02:54:46] 2026-02-19 01:54:46,110 [wrapper] pilotpid: 1233
[2026-02-19 02:54:46] 2026-02-19 01:54:46,111 [wrapper] Pilot exit status: 0
[2026-02-19 02:54:46] 2026-02-19 01:54:46,116 [wrapper] pandaids: 7017439058
[2026-02-19 02:54:46] 2026-02-19 01:54:46,137 [wrapper] cleanup supervisor_pilot 23043 1234
[2026-02-19 02:54:46] 2026-02-19 01:54:46,138 [wrapper] Test setup, not cleaning
[2026-02-19 02:54:46] 2026-02-19 01:54:46,139 [wrapper] apfmon messages muted
[2026-02-19 02:54:46] 2026-02-19 01:54:46,140 [wrapper] ==== wrapper stdout END ====
[2026-02-19 02:54:46] 2026-02-19 01:54:46,141 [wrapper] ==== wrapper stderr END ====
[2026-02-19 02:54:46]  *** Error codes and diagnostics ***
[2026-02-19 02:54:46]     "exeErrorCode": 0,
[2026-02-19 02:54:46]     "exeErrorDiag": "",
[2026-02-19 02:54:46]     "pilotErrorCode": 0,
[2026-02-19 02:54:46]     "pilotErrorDiag": "",
[2026-02-19 02:54:46]  *** Listing of results directory ***
[2026-02-19 02:54:46] total 457928
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user    584627 Feb 16 19:05 pilot3.tar.gz
[2026-02-19 02:54:46] -rwx------ 1 mf493845 unix-user     36322 Feb 16 19:07 runpilot2-wrapper.sh
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      5111 Feb 16 19:07 queuedata.json
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user       100 Feb 19 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-19 02:54:46] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 19 00:34 run_atlas
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user       105 Feb 19 00:34 job.xml
[2026-02-19 02:54:46] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 19 01:44 start_atlas.sh
[2026-02-19 02:54:46] drwxrwx--x 2 mf493845 unix-user       100 Feb 19 01:44 shared
[2026-02-19 02:54:46] -rw-r--r-- 2 mf493845 unix-user    597985 Feb 19 01:44 input.tar.gz
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      6390 Feb 19 01:44 init_data.xml
[2026-02-19 02:54:46] -rw-r--r-- 2 mf493845 unix-user 273221996 Feb 19 01:44 EVNT.48610891._000007.pool.root.1
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user         0 Feb 19 01:44 boinc_setup_complete
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      8192 Feb 19 01:44 boinc_mmap_file
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user         0 Feb 19 01:44 boinc_lockfile
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      2636 Feb 19 01:44 pandaJob.out
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user   1001034 Feb 19 01:44 agis_schedconf.cvmfs.json
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user   1513015 Feb 19 01:44 agis_ddmendpoints.agis.ALL.json
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user       414 Feb 19 01:44 workernode_map.json
[2026-02-19 02:54:46] drwx------ 5 mf493845 unix-user       440 Feb 19 01:44 pilot3
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user 189918254 Feb 19 02:53 HITS.48610894._001590.pool.root.1
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      1016 Feb 19 02:54 memory_monitor_summary.json
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user        95 Feb 19 02:54 pilot_heartbeat.json
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user    309862 Feb 19 02:54 log.48610894._001590.job.log.tgz.1
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      6307 Feb 19 02:54 heartbeat.json
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      5285 Feb 19 02:54 pilotlog.txt
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user    627598 Feb 19 02:54 log.48610894._001590.job.log.1
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user       357 Feb 19 02:54 output.list
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user       620 Feb 19 02:54 runtime_log
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user    952320 Feb 19 02:54 result.tar.gz
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user      9219 Feb 19 02:54 runtime_log.err
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user       645 Feb 19 02:54 IR7LDmLBIC9n9Rq4apOajLDm4fhM0noT9bVooX4SDm8UrKDmtrRTUo.diag
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user     21825 Feb 19 02:54 stderr.txt
[2026-02-19 02:54:46] HITS file was successfully produced:
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user 189918254 Feb 19 02:53 shared/HITS.pool.root.1
[2026-02-19 02:54:46]  *** Contents of shared directory: ***
[2026-02-19 02:54:46] total 453820
[2026-02-19 02:54:46] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 19 01:44 start_atlas.sh
[2026-02-19 02:54:46] -rw-r--r-- 2 mf493845 unix-user    597985 Feb 19 01:44 input.tar.gz
[2026-02-19 02:54:46] -rw-r--r-- 2 mf493845 unix-user 273221996 Feb 19 01:44 ATLAS.root_0
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user 189918254 Feb 19 02:53 HITS.pool.root.1
[2026-02-19 02:54:46] -rw------- 1 mf493845 unix-user    952320 Feb 19 02:54 result.tar.gz
02:54:47 (29714): run_atlas exited; CPU time 27195.518573
02:54:47 (29714): called boinc_finish(0)

</stderr_txt>
]]>

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