Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:12:19 (1800240): wrapper (7.7.26015): starting
06:12:19 (1800240): wrapper: running run_atlas (--nthreads 4)
[2026-02-19 06:12:19] Arguments: --nthreads 4
[2026-02-19 06:12:19] Threads: 4
[2026-02-19 06:12:19] Checking for CVMFS
[2026-02-19 06:12:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 06:12:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 06:12:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 06:12:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 06:12:20] 2.9.2.0 872034 6186 101968 156395 0 49 26612998 36864001 0 130560 0 2607737 99.986 206907 17165 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-19 06:12:20] CVMFS is ok
[2026-02-19 06:12:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 06:12:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 06:12:20] Further information can be found at the LHC@home message board.
[2026-02-19 06:12:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 06:12:20] Checking for apptainer binary...
[2026-02-19 06:12:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 06:12:20] Running /usr/bin/apptainer --version
[2026-02-19 06:12:20] apptainer version 1.4.1-1.1
[2026-02-19 06:12:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 06:12:20] thA334
[2026-02-19 06:12:20] apptainer works
[2026-02-19 06:12:20] Set ATHENA_PROC_NUMBER=4
[2026-02-19 06:12:20] Set ATHENA_CORE_NUMBER=4
[2026-02-19 06:12:20] Starting ATLAS job with PandaID=7019055674
[2026-02-19 06:12:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-19 07:55:45]  *** The last 200 lines of the pilot log: ***
[2026-02-19 07:55:45] 2026-02-19 06:55:07,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-19 07:55:45] 2026-02-19 06:55:07,496 | INFO     | collected zombie processes
[2026-02-19 07:55:45] 2026-02-19 06:55:07,496 | INFO     | will attempt to kill all subprocesses of pid=1808848
[2026-02-19 07:55:45] 2026-02-19 06:55:07,537 | INFO     | process IDs to be killed: [1808848] (in reverse order)
[2026-02-19 07:55:45] 2026-02-19 06:55:07,568 | WARNING  | found no corresponding commands to process id(s)
[2026-02-19 07:55:45] 2026-02-19 06:55:07,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-19 07:55:45] 2026-02-19 06:55:07,570 | INFO     | did not find any defunct processes belonging to 1808848
[2026-02-19 07:55:45] 2026-02-19 06:55:07,571 | INFO     | did not find any defunct processes belonging to 1808848
[2026-02-19 07:55:45] 2026-02-19 06:55:07,571 | INFO     | ready for new job
[2026-02-19 07:55:45] 2026-02-19 06:55:07,571 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-19 07:55:45] 2026-02-19 06:55:07,572 | INFO     | **************************************
[2026-02-19 07:55:45] 2026-02-19 06:55:07,572 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-19 07:55:45] 2026-02-19 06:55:07,572 | INFO     | **************************************
[2026-02-19 07:55:45] 2026-02-19 06:55:07,572 | INFO     | 
[2026-02-19 07:55:45] 2026-02-19 06:55:07,572 | INFO     | architecture information:
[2026-02-19 07:55:45] 2026-02-19 06:55:07,572 | INFO     | executing command: cat /etc/os-release
[2026-02-19 07:55:45] 2026-02-19 06:55:07,585 | INFO     | cat /etc/os-release:
[2026-02-19 07:55:45] NAME="CentOS Linux"
[2026-02-19 07:55:45] VERSION="7 (Core)"
[2026-02-19 07:55:45] ID="centos"
[2026-02-19 07:55:45] ID_LIKE="rhel fedora"
[2026-02-19 07:55:45] VERSION_ID="7"
[2026-02-19 07:55:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-19 07:55:45] ANSI_COLOR="0;31"
[2026-02-19 07:55:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-19 07:55:45] HOME_URL="https://www.centos.org/"
[2026-02-19 07:55:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-19 07:55:45] 
[2026-02-19 07:55:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-19 07:55:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-19 07:55:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-19 07:55:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-19 07:55:45] 
[2026-02-19 07:55:45] 2026-02-19 06:55:07,586 | INFO     | **************************************
[2026-02-19 07:55:45] 2026-02-19 06:55:08,089 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-19 07:55:45] 2026-02-19 06:55:08,106 | INFO     | sufficient remaining disk space (228277092352 B)
[2026-02-19 07:55:45] 2026-02-19 06:55:08,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-19 07:55:45] 2026-02-19 06:55:08,106 | INFO     | current server update state: UPDATING_FINAL
[2026-02-19 07:55:45] 2026-02-19 06:55:08,106 | INFO     | update_server=False
[2026-02-19 07:55:45] 2026-02-19 06:55:08,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-19 07:55:45] 2026-02-19 06:55:08,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-19 07:55:45] 2026-02-19 06:55:08,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-19 07:55:45] 2026-02-19 06:55:08,494 | INFO     | all payload control threads have been joined
[2026-02-19 07:55:45] 2026-02-19 06:55:08,944 | INFO     | all data control threads have been joined
[2026-02-19 07:55:45] 2026-02-19 06:55:09,112 | INFO     | [job] retrieve thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,112 | INFO     | [job] queue monitor thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-19 07:55:45] 2026-02-19 06:55:09,499 | INFO     | [payload] control thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,627 | INFO     | [job] validate thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,691 | INFO     | all job control threads have been joined
[2026-02-19 07:55:45] 2026-02-19 06:55:09,719 | INFO     | [job] create_data_payload thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,754 | INFO     | [payload] execute_payloads thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,822 | INFO     | [payload] validate_pre thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,950 | INFO     | [data] control thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,987 | INFO     | [payload] validate_post thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:09,988 | INFO     | [data] copytool_in thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:10,237 | WARNING  | process 1808848 can no longer be monitored (due to stat problems) - aborting
[2026-02-19 07:55:45] 2026-02-19 06:55:10,266 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-19 07:55:45] 2026-02-19 06:55:10,303 | INFO     | number of running child processes to parent process 1808848: 1
[2026-02-19 07:55:45] 2026-02-19 06:55:10,303 | INFO     | maximum number of monitored processes: 6
[2026-02-19 07:55:45] 2026-02-19 06:55:10,303 | INFO     | aborting job monitoring since job object (job id=7019055674) has expired
[2026-02-19 07:55:45] 2026-02-19 06:55:10,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-19 07:55:45] 2026-02-19 06:55:10,303 | INFO     | will abort loop
[2026-02-19 07:55:45] 2026-02-19 06:55:10,527 | INFO     | [payload] failed_post thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:10,697 | INFO     | [job] control thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:11,193 | INFO     | [data] copytool_out thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:11,309 | INFO     | [job] job monitor thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:11,866 | INFO     | job.realtimelogging is not enabled
[2026-02-19 07:55:45] 2026-02-19 06:55:12,113 | INFO     | [data] queue_monitor thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:12,871 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-19 07:55:45] 2026-02-19 06:55:39,096 | INFO     | PID=1804341 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-19 07:55:45] 2026-02-19 06:55:39,096 | INFO     | found 0 job(s) in 20 queues
[2026-02-19 07:55:45] 2026-02-19 06:55:39,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-19 07:55:45] 2026-02-19 06:55:39,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-19 07:55:45] 2026-02-19 06:55:39,266 | INFO     | [monitor] cgroup control has ended
[2026-02-19 07:55:45] 2026-02-19 06:55:40,554 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629846222656)>', '<ExcThread(monitor, started 139628816348928)>']
[2026-02-19 07:55:45] 2026-02-19 06:55:41,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-19 07:55:45] 2026-02-19 06:55:41,108 | INFO     | [monitor] control thread has ended
[2026-02-19 07:55:45] 2026-02-19 06:55:45,580 | INFO     | all workflow threads have been joined
[2026-02-19 07:55:45] 2026-02-19 06:55:45,580 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-19 07:55:45] 2026-02-19 06:55:45,580 | INFO     | traces error code: 0
[2026-02-19 07:55:45] 2026-02-19 06:55:45,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-19 07:55:45] 2026-02-19 06:55:45,646 [wrapper] ==== pilot stdout END ====
[2026-02-19 07:55:45] 2026-02-19 06:55:45,650 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-19 07:55:45] 2026-02-19 06:55:45,654 [wrapper] pilotpid: 1804341
[2026-02-19 07:55:45] 2026-02-19 06:55:45,657 [wrapper] Pilot exit status: 0
[2026-02-19 07:55:45] 2026-02-19 06:55:45,667 [wrapper] pandaids: 7019055674
[2026-02-19 07:55:45] 2026-02-19 06:55:45,688 [wrapper] cleanup supervisor_pilot 1814217 1804342
[2026-02-19 07:55:45] 2026-02-19 06:55:45,691 [wrapper] Test setup, not cleaning
[2026-02-19 07:55:45] 2026-02-19 06:55:45,695 [wrapper] apfmon messages muted
[2026-02-19 07:55:45] 2026-02-19 06:55:45,699 [wrapper] ==== wrapper stdout END ====
[2026-02-19 07:55:45] 2026-02-19 06:55:45,702 [wrapper] ==== wrapper stderr END ====
[2026-02-19 07:55:45]  *** Error codes and diagnostics ***
[2026-02-19 07:55:45]     "exeErrorCode": 0,
[2026-02-19 07:55:45]     "exeErrorDiag": "",
[2026-02-19 07:55:45]     "pilotErrorCode": 0,
[2026-02-19 07:55:45]     "pilotErrorDiag": "",
[2026-02-19 07:55:45]  *** Listing of results directory ***
[2026-02-19 07:55:45] total 937600
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc    584627 Feb 18 06:12 pilot3.tar.gz
[2026-02-19 07:55:45] -rwx------ 1 boinc boinc     36322 Feb 18 06:13 runpilot2-wrapper.sh
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc      5111 Feb 18 06:19 queuedata.json
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc       100 Feb 19 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-19 07:55:45] -rwxr-xr-x 1 boinc boinc      7986 Feb 19 06:12 run_atlas
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc       105 Feb 19 06:12 job.xml
[2026-02-19 07:55:45] -rw-r--r-- 2 boinc boinc 673658135 Feb 19 06:12 EVNT.48508760._000562.pool.root.1
[2026-02-19 07:55:45] -rw-r--r-- 2 boinc boinc    597950 Feb 19 06:12 input.tar.gz
[2026-02-19 07:55:45] -rw-r--r-- 2 boinc boinc     15845 Feb 19 06:12 start_atlas.sh
[2026-02-19 07:55:45] drwxrwx--x 2 boinc boinc      4096 Feb 19 06:12 shared
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc         0 Feb 19 06:12 boinc_setup_complete
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc      6369 Feb 19 06:12 init_data.xml
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc         0 Feb 19 06:12 boinc_lockfile
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc      2553 Feb 19 06:12 pandaJob.out
[2026-02-19 07:55:45] -rw------- 1 boinc boinc   1001042 Feb 19 06:12 agis_schedconf.cvmfs.json
[2026-02-19 07:55:45] -rw------- 1 boinc boinc   1513015 Feb 19 06:12 agis_ddmendpoints.agis.ALL.json
[2026-02-19 07:55:45] -rw------- 1 boinc boinc       421 Feb 19 06:12 workernode_map.json
[2026-02-19 07:55:45] drwx------ 5 boinc boinc      4096 Feb 19 06:12 pilot3
[2026-02-19 07:55:45] -rw------- 1 boinc boinc 280104199 Feb 19 07:54 HITS.48508763._028771.pool.root.1
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc       530 Feb 19 07:54 boinc_task_state.xml
[2026-02-19 07:55:45] -rw------- 1 boinc boinc        95 Feb 19 07:55 pilot_heartbeat.json
[2026-02-19 07:55:45] -rw------- 1 boinc boinc      1018 Feb 19 07:55 memory_monitor_summary.json
[2026-02-19 07:55:45] -rw------- 1 boinc boinc    318116 Feb 19 07:55 log.48508763._028771.job.log.tgz.1
[2026-02-19 07:55:45] -rw------- 1 boinc boinc      6308 Feb 19 07:55 heartbeat.json
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc      8192 Feb 19 07:55 boinc_mmap_file
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc        27 Feb 19 07:55 wrapper_checkpoint.txt
[2026-02-19 07:55:45] -rw------- 1 boinc boinc      5344 Feb 19 07:55 pilotlog.txt
[2026-02-19 07:55:45] -rw------- 1 boinc boinc    892784 Feb 19 07:55 log.48508763._028771.job.log.1
[2026-02-19 07:55:45] -rw------- 1 boinc boinc       357 Feb 19 07:55 output.list
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc       620 Feb 19 07:55 runtime_log
[2026-02-19 07:55:45] -rw------- 1 boinc boinc   1228800 Feb 19 07:55 result.tar.gz
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc      8896 Feb 19 07:55 runtime_log.err
[2026-02-19 07:55:45] -rw------- 1 boinc boinc       657 Feb 19 07:55 HORLDml3oC9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmScvKDmncjcgm.diag
[2026-02-19 07:55:45] -rw-r--r-- 1 boinc boinc     11140 Feb 19 07:55 stderr.txt
[2026-02-19 07:55:45] HITS file was successfully produced:
[2026-02-19 07:55:45] -rw------- 1 boinc boinc 280104199 Feb 19 07:54 shared/HITS.pool.root.1
[2026-02-19 07:55:45]  *** Contents of shared directory: ***
[2026-02-19 07:55:45] total 933220
[2026-02-19 07:55:45] -rw-r--r-- 2 boinc boinc 673658135 Feb 19 06:12 ATLAS.root_0
[2026-02-19 07:55:45] -rw-r--r-- 2 boinc boinc    597950 Feb 19 06:12 input.tar.gz
[2026-02-19 07:55:45] -rw-r--r-- 2 boinc boinc     15845 Feb 19 06:12 start_atlas.sh
[2026-02-19 07:55:45] -rw------- 1 boinc boinc 280104199 Feb 19 07:54 HITS.pool.root.1
[2026-02-19 07:55:45] -rw------- 1 boinc boinc   1228800 Feb 19 07:55 result.tar.gz
07:55:47 (1800240): run_atlas exited; CPU time 23465.845982
07:55:47 (1800240): called boinc_finish(0)

</stderr_txt>
]]>

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