Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:08:03 (4107816): wrapper (7.7.26015): starting
03:08:03 (4107816): wrapper: running run_atlas (--nthreads 3)
[2026-02-19 03:08:03] Arguments: --nthreads 3
[2026-02-19 03:08:03] Threads: 3
[2026-02-19 03:08:03] Checking for CVMFS
[2026-02-19 03:08:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 03:08:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 03:08:03] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 03:08:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 03:08:03] 2.9.2.0 3609891 3615 82056 156389 0 50 27838504 36864001 0 130560 0 1249249 99.981 138923 13311 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-19 03:08:03] CVMFS is ok
[2026-02-19 03:08:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 03:08:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 03:08:03] Further information can be found at the LHC@home message board.
[2026-02-19 03:08:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 03:08:03] Checking for apptainer binary...
[2026-02-19 03:08:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 03:08:03] Running /usr/bin/apptainer --version
[2026-02-19 03:08:03] apptainer version 1.4.1-1.1
[2026-02-19 03:08:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 03:08:03] magicA246a
[2026-02-19 03:08:03] apptainer works
[2026-02-19 03:08:03] Set ATHENA_PROC_NUMBER=3
[2026-02-19 03:08:03] Set ATHENA_CORE_NUMBER=3
[2026-02-19 03:08:03] Starting ATLAS job with PandaID=7018862996
[2026-02-19 03:08:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-19 05:11:49]  *** The last 200 lines of the pilot log: ***
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | job 7018862996 has completed (purged errors)
[2026-02-19 05:11:49] 2026-02-19 04:11:17,026 | INFO     | overall cleanup function is called
[2026-02-19 05:11:49] 2026-02-19 04:11:18,033 | INFO     | --- collectZombieJob: --- 10, [4116280]
[2026-02-19 05:11:49] 2026-02-19 04:11:18,033 | INFO     | zombie collector waiting for pid 4116280
[2026-02-19 05:11:49] 2026-02-19 04:11:18,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-19 05:11:49] 2026-02-19 04:11:18,033 | INFO     | collected zombie processes
[2026-02-19 05:11:49] 2026-02-19 04:11:18,033 | INFO     | will attempt to kill all subprocesses of pid=4116280
[2026-02-19 05:11:49] 2026-02-19 04:11:18,089 | INFO     | process IDs to be killed: [4116280] (in reverse order)
[2026-02-19 05:11:49] 2026-02-19 04:11:18,119 | WARNING  | found no corresponding commands to process id(s)
[2026-02-19 05:11:49] 2026-02-19 04:11:18,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-19 05:11:49] 2026-02-19 04:11:18,121 | INFO     | did not find any defunct processes belonging to 4116280
[2026-02-19 05:11:49] 2026-02-19 04:11:18,122 | INFO     | did not find any defunct processes belonging to 4116280
[2026-02-19 05:11:49] 2026-02-19 04:11:18,122 | INFO     | ready for new job
[2026-02-19 05:11:49] 2026-02-19 04:11:18,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-19 05:11:49] 2026-02-19 04:11:18,123 | INFO     | **************************************
[2026-02-19 05:11:49] 2026-02-19 04:11:18,123 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-19 05:11:49] 2026-02-19 04:11:18,123 | INFO     | **************************************
[2026-02-19 05:11:49] 2026-02-19 04:11:18,123 | INFO     | 
[2026-02-19 05:11:49] 2026-02-19 04:11:18,124 | INFO     | architecture information:
[2026-02-19 05:11:49] 2026-02-19 04:11:18,124 | INFO     | executing command: cat /etc/os-release
[2026-02-19 05:11:49] 2026-02-19 04:11:18,133 | INFO     | cat /etc/os-release:
[2026-02-19 05:11:49] NAME="CentOS Linux"
[2026-02-19 05:11:49] VERSION="7 (Core)"
[2026-02-19 05:11:49] ID="centos"
[2026-02-19 05:11:49] ID_LIKE="rhel fedora"
[2026-02-19 05:11:49] VERSION_ID="7"
[2026-02-19 05:11:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-19 05:11:49] ANSI_COLOR="0;31"
[2026-02-19 05:11:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-19 05:11:49] HOME_URL="https://www.centos.org/"
[2026-02-19 05:11:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-19 05:11:49] 
[2026-02-19 05:11:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-19 05:11:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-19 05:11:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-19 05:11:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-19 05:11:49] 
[2026-02-19 05:11:49] 2026-02-19 04:11:18,133 | INFO     | **************************************
[2026-02-19 05:11:49] 2026-02-19 04:11:18,636 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-19 05:11:49] 2026-02-19 04:11:18,648 | INFO     | sufficient remaining disk space (271874785280 B)
[2026-02-19 05:11:49] 2026-02-19 04:11:18,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-19 05:11:49] 2026-02-19 04:11:18,649 | INFO     | current server update state: UPDATING_FINAL
[2026-02-19 05:11:49] 2026-02-19 04:11:18,649 | INFO     | update_server=False
[2026-02-19 05:11:49] 2026-02-19 04:11:18,649 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-19 05:11:49] 2026-02-19 04:11:18,649 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-19 05:11:49] 2026-02-19 04:11:18,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-19 05:11:49] 2026-02-19 04:11:18,680 | INFO     | all payload control threads have been joined
[2026-02-19 05:11:49] 2026-02-19 04:11:18,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-19 05:11:49] 2026-02-19 04:11:18,793 | INFO     | aborting loop
[2026-02-19 05:11:49] 2026-02-19 04:11:18,794 | INFO     | all job control threads have been joined
[2026-02-19 05:11:49] 2026-02-19 04:11:19,110 | INFO     | all data control threads have been joined
[2026-02-19 05:11:49] 2026-02-19 04:11:19,650 | INFO     | [job] retrieve thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:19,655 | INFO     | [job] queue monitor thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:19,661 | INFO     | [payload] execute_payloads thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:19,685 | INFO     | [payload] control thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:19,796 | INFO     | [job] control thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:19,796 | INFO     | [job] job monitor thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:20,088 | INFO     | [payload] validate_post thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:20,115 | INFO     | [data] control thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:20,608 | INFO     | [payload] failed_post thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:20,656 | INFO     | [data] copytool_out thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:20,783 | INFO     | [job] validate thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:20,844 | INFO     | [job] create_data_payload thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:20,976 | INFO     | [payload] validate_pre thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:21,012 | INFO     | [data] copytool_in thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:21,502 | INFO     | [monitor] cgroup control has ended
[2026-02-19 05:11:49] 2026-02-19 04:11:21,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-19 05:11:49] 2026-02-19 04:11:25,597 | INFO     | [data] queue_monitor thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:28,973 | INFO     | job.realtimelogging is not enabled
[2026-02-19 05:11:49] 2026-02-19 04:11:29,979 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-19 05:11:49] 2026-02-19 04:11:31,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162257975104)>', '<ExcThread(monitor, started 140161976645376)>']
[2026-02-19 05:11:49] 2026-02-19 04:11:36,818 | INFO     | all workflow threads have been joined
[2026-02-19 05:11:49] 2026-02-19 04:11:36,818 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-19 05:11:49] 2026-02-19 04:11:36,818 | INFO     | traces error code: 0
[2026-02-19 05:11:49] 2026-02-19 04:11:36,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-19 05:11:49] 2026-02-19 04:11:49,123 | INFO     | PID=4111856 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-19 05:11:49] 2026-02-19 04:11:49,123 | INFO     | found 0 job(s) in 20 queues
[2026-02-19 05:11:49] 2026-02-19 04:11:49,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-19 05:11:49] 2026-02-19 04:11:49,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-19 05:11:49] 2026-02-19 04:11:49,123 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-19 05:11:49] 2026-02-19 04:11:49,123 | INFO     | [monitor] control thread has ended
[2026-02-19 05:11:49] 2026-02-19 04:11:49,174 [wrapper] ==== pilot stdout END ====
[2026-02-19 05:11:49] 2026-02-19 04:11:49,177 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-19 05:11:49] 2026-02-19 04:11:49,179 [wrapper] pilotpid: 4111856
[2026-02-19 05:11:49] 2026-02-19 04:11:49,182 [wrapper] Pilot exit status: 0
[2026-02-19 05:11:49] 2026-02-19 04:11:49,189 [wrapper] pandaids: 7018862996
[2026-02-19 05:11:49] 2026-02-19 04:11:49,208 [wrapper] cleanup supervisor_pilot 4123490 4111857
[2026-02-19 05:11:49] 2026-02-19 04:11:49,210 [wrapper] Test setup, not cleaning
[2026-02-19 05:11:49] 2026-02-19 04:11:49,213 [wrapper] apfmon messages muted
[2026-02-19 05:11:49] 2026-02-19 04:11:49,215 [wrapper] ==== wrapper stdout END ====
[2026-02-19 05:11:49] 2026-02-19 04:11:49,218 [wrapper] ==== wrapper stderr END ====
[2026-02-19 05:11:49]  *** Error codes and diagnostics ***
[2026-02-19 05:11:49]     "exeErrorCode": 0,
[2026-02-19 05:11:49]     "exeErrorDiag": "",
[2026-02-19 05:11:49]     "pilotErrorCode": 0,
[2026-02-19 05:11:49]     "pilotErrorDiag": "",
[2026-02-19 05:11:49]  *** Listing of results directory ***
[2026-02-19 05:11:49] total 945160
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc    584627 Feb 18 03:39 pilot3.tar.gz
[2026-02-19 05:11:49] -rwx------ 1 boinc boinc     36322 Feb 18 03:43 runpilot2-wrapper.sh
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc      5111 Feb 18 03:46 queuedata.json
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc       100 Feb 19 03:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-19 05:11:49] -rwxr-xr-x 1 boinc boinc      7986 Feb 19 03:08 run_atlas
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc       105 Feb 19 03:08 job.xml
[2026-02-19 05:11:49] -rw-r--r-- 2 boinc boinc 677130531 Feb 19 03:08 EVNT.48508760._000523.pool.root.1
[2026-02-19 05:11:49] -rw-r--r-- 2 boinc boinc    597958 Feb 19 03:08 input.tar.gz
[2026-02-19 05:11:49] -rw-r--r-- 2 boinc boinc     15845 Feb 19 03:08 start_atlas.sh
[2026-02-19 05:11:49] drwxrwx--x 2 boinc boinc      4096 Feb 19 03:08 shared
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc         0 Feb 19 03:08 boinc_setup_complete
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc      6447 Feb 19 03:08 init_data.xml
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc         0 Feb 19 03:08 boinc_lockfile
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc      2551 Feb 19 03:08 pandaJob.out
[2026-02-19 05:11:49] -rw------- 1 boinc boinc   1001034 Feb 19 03:08 agis_schedconf.cvmfs.json
[2026-02-19 05:11:49] -rw------- 1 boinc boinc   1513015 Feb 19 03:08 agis_ddmendpoints.agis.ALL.json
[2026-02-19 05:11:49] -rw------- 1 boinc boinc       427 Feb 19 03:08 workernode_map.json
[2026-02-19 05:11:49] drwx------ 5 boinc boinc      4096 Feb 19 03:08 pilot3
[2026-02-19 05:11:49] -rw------- 1 boinc boinc 284103346 Feb 19 05:10 HITS.48508763._026716.pool.root.1
[2026-02-19 05:11:49] -rw------- 1 boinc boinc        95 Feb 19 05:10 pilot_heartbeat.json
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc       530 Feb 19 05:10 boinc_task_state.xml
[2026-02-19 05:11:49] -rw------- 1 boinc boinc      1016 Feb 19 05:11 memory_monitor_summary.json
[2026-02-19 05:11:49] -rw------- 1 boinc boinc    279450 Feb 19 05:11 log.48508763._026716.job.log.tgz.1
[2026-02-19 05:11:49] -rw------- 1 boinc boinc      6305 Feb 19 05:11 heartbeat.json
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc      8192 Feb 19 05:11 boinc_mmap_file
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc        27 Feb 19 05:11 wrapper_checkpoint.txt
[2026-02-19 05:11:49] -rw------- 1 boinc boinc       747 Feb 19 05:11 pilotlog.txt
[2026-02-19 05:11:49] -rw------- 1 boinc boinc   1064257 Feb 19 05:11 log.48508763._026716.job.log.1
[2026-02-19 05:11:49] -rw------- 1 boinc boinc       357 Feb 19 05:11 output.list
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc       620 Feb 19 05:11 runtime_log
[2026-02-19 05:11:49] -rw------- 1 boinc boinc   1361920 Feb 19 05:11 result.tar.gz
[2026-02-19 05:11:49] -rw------- 1 boinc boinc       661 Feb 19 05:11 vNfNDm6hmC9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmTJvKDmX4nX1m.diag
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc      8916 Feb 19 05:11 runtime_log.err
[2026-02-19 05:11:49] -rw-r--r-- 1 boinc boinc     11513 Feb 19 05:11 stderr.txt
[2026-02-19 05:11:49] HITS file was successfully produced:
[2026-02-19 05:11:49] -rw------- 1 boinc boinc 284103346 Feb 19 05:10 shared/HITS.pool.root.1
[2026-02-19 05:11:49]  *** Contents of shared directory: ***
[2026-02-19 05:11:49] total 940652
[2026-02-19 05:11:49] -rw-r--r-- 2 boinc boinc 677130531 Feb 19 03:08 ATLAS.root_0
[2026-02-19 05:11:49] -rw-r--r-- 2 boinc boinc    597958 Feb 19 03:08 input.tar.gz
[2026-02-19 05:11:49] -rw-r--r-- 2 boinc boinc     15845 Feb 19 03:08 start_atlas.sh
[2026-02-19 05:11:49] -rw------- 1 boinc boinc 284103346 Feb 19 05:10 HITS.pool.root.1
[2026-02-19 05:11:49] -rw------- 1 boinc boinc   1361920 Feb 19 05:11 result.tar.gz
05:11:50 (4107816): run_atlas exited; CPU time 21332.225440
05:11:50 (4107816): called boinc_finish(0)

</stderr_txt>
]]>

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