Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
03:51:01 (3069645): wrapper (7.7.26015): starting
03:51:01 (3069645): wrapper: running run_atlas (--nthreads 4)
[2026-02-20 03:51:01] Arguments: --nthreads 4
[2026-02-20 03:51:01] Threads: 4
[2026-02-20 03:51:01] Checking for CVMFS
[2026-02-20 03:51:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-20 03:51:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-20 03:51:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-20 03:51:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-20 03:51:01] 2.13.3.0 11582 5946 36676 156430 3 50 28204784 33554433 0 130560 0 3015210 99.987 225204 236 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-20 03:51:01] CVMFS is ok
[2026-02-20 03:51:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-20 03:51:01] Checking for apptainer binary...
[2026-02-20 03:51:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-20 03:51:01] Running /usr/bin/apptainer --version
[2026-02-20 03:51:01] apptainer version 1.4.5
[2026-02-20 03:51:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-20 03:51:01] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-20 03:51:01] apptainer works
[2026-02-20 03:51:01] Set ATHENA_PROC_NUMBER=4
[2026-02-20 03:51:01] Set ATHENA_CORE_NUMBER=4
[2026-02-20 03:51:01] Starting ATLAS job with PandaID=7018853267
[2026-02-20 03:51:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-20 05:16:21]  *** The last 200 lines of the pilot log: ***
[2026-02-20 05:16:21]  guid=a12f0976-2120-48b4-9fdb-f59ba86dfa8e
[2026-02-20 05:16:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-20 05:16:21]  is_altstaged=None
[2026-02-20 05:16:21]  is_tar=False
[2026-02-20 05:16:21]  lfn=log.48508763._025464.job.log.tgz.1
[2026-02-20 05:16:21]  mtime=0
[2026-02-20 05:16:21]  protocol_id=None
[2026-02-20 05:16:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-20 05:16:21]  replicas=None
[2026-02-20 05:16:21]  scope=mc23_13p6TeV
[2026-02-20 05:16:21]  status=None
[2026-02-20 05:16:21]  status_code=0
[2026-02-20 05:16:21]  storage_token=
[2026-02-20 05:16:21]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7018853267/log.48508763._025464.job.log.tgz.1
[2026-02-20 05:16:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/ca/log.48508763._025464.job.log.tgz.1
[2026-02-20 05:16:21]  workdir=None
[2026-02-20 05:16:21] ]
[2026-02-20 05:16:21] 2026-02-20 03:15:22,533 | INFO     | transferring file log.48508763._025464.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7018853267/log.48508763._025464.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-20 05:16:21] 2026-02-20 03:15:22,533 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7018853267/log.48508763._025464.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48508763._025464.job
[2026-02-20 05:16:21] 2026-02-20 03:15:22,541 | INFO     | adding to output.list: log.48508763._025464.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/ca/log.48508763._025464.job.log.tg
[2026-02-20 05:16:21] 2026-02-20 03:15:22,542 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-20 05:16:21] 2026-02-20 03:15:22,542 | INFO     | summary of transferred files:
[2026-02-20 05:16:21] 2026-02-20 03:15:22,542 | INFO     |  -- lfn=log.48508763._025464.job.log.tgz.1, status_code=0, status=transferred
[2026-02-20 05:16:21] 2026-02-20 03:15:22,542 | INFO     | stage-out finished correctly
[2026-02-20 05:16:21] 2026-02-20 03:15:22,734 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-20 05:16:21] 2026-02-20 03:15:24,099 | INFO     | time since job start (5056s) is within the limit (349056.0s)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,710 | INFO     | job 7018853267 has state=finished
[2026-02-20 05:16:21] 2026-02-20 03:15:24,710 | INFO     | preparing for final server update for job 7018853267 in state='finished'
[2026-02-20 05:16:21] 2026-02-20 03:15:24,710 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7018853267/jobReport.json
[2026-02-20 05:16:21] 2026-02-20 03:15:24,711 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-20 05:16:21] 2026-02-20 03:15:24,711 | INFO     | this job has now completed (state=finished)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,711 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,711 | INFO     | log transfer has been attempted: DONE
[2026-02-20 05:16:21] 2026-02-20 03:15:24,711 | INFO     | job 7018853267 has finished - writing final server update
[2026-02-20 05:16:21] 2026-02-20 03:15:24,711 | INFO     | total number of processed events: 400 (read)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,713 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7018853267/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,713 | INFO     | extracted standard info from prmon json
[2026-02-20 05:16:21] 2026-02-20 03:15:24,713 | INFO     | extracted standard memory fields from prmon json
[2026-02-20 05:16:21] 2026-02-20 03:15:24,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-20 05:16:21] 2026-02-20 03:15:24,714 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-20 05:16:21] 2026-02-20 03:15:24,714 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-20 05:16:21] 2026-02-20 03:15:24,714 | INFO     | fitting pss+swap vs Time
[2026-02-20 05:16:21] 2026-02-20 03:15:24,714 | INFO     | sum of square deviations: 136095575.0
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | sum of deviations: -12978943007.5
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | mean x: 1771554876.5
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | mean y: 2519857.25
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | intersect: 168949304326.56287
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | chi2: 0.16598413982960392
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | current memory leak: -95.37 B/s (using 76 data points, chi2=0.17)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | could have reported an average CPU frequency of 3067 MHz (6 samples)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | ..............................
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . Timing measurements:
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . get job = 0 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . initial setup = 3 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . payload setup = 2 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . stage-in = 0 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . payload execution = 5035 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . stage-out = 0 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | . log creation = 0 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,715 | INFO     | ..............................
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | 
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | job summary report
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | --------------------------------------------------
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | PanDA job id: 7018853267
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | task id: 48508763
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | errors: (none)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-20 05:16:21] 2026-02-20 03:15:24,742 | INFO     | pilot state: finished 
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | transexitcode: 0
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | exeerrorcode: 0
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | exeerrordiag: 
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | exitcode: 0
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | exitmsg: OK
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | cpuconsumptiontime: 19331 s
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | nevents: 400
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | neventsw: 0
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | pid: 3078097
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | pgrp: 3078097
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | corecount: 4
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | event service: False
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | sizes: {0: 2282259, 11: 2282259, 5041: 2308726, 5042: 2317724, 5043: 2317780, 5045: 2317974}
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | --------------------------------------------------
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | 
[2026-02-20 05:16:21] 2026-02-20 03:15:24,743 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,751 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | job 7018853267 has completed (purged errors)
[2026-02-20 05:16:21] 2026-02-20 03:15:24,752 | INFO     | overall cleanup function is called
[2026-02-20 05:16:21] 2026-02-20 03:15:25,759 | INFO     | --- collectZombieJob: --- 10, [3078097]
[2026-02-20 05:16:21] 2026-02-20 03:15:25,759 | INFO     | zombie collector waiting for pid 3078097
[2026-02-20 05:16:21] 2026-02-20 03:15:25,759 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-20 05:16:21] 2026-02-20 03:15:25,759 | INFO     | collected zombie processes
[2026-02-20 05:16:21] 2026-02-20 03:15:25,759 | INFO     | will attempt to kill all subprocesses of pid=3078097
[2026-02-20 05:16:21] 2026-02-20 03:15:25,845 | INFO     | process IDs to be killed: [3078097] (in reverse order)
[2026-02-20 05:16:21] 2026-02-20 03:15:25,874 | WARNING  | found no corresponding commands to process id(s)
[2026-02-20 05:16:21] 2026-02-20 03:15:25,875 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-20 05:16:21] 2026-02-20 03:15:25,877 | INFO     | did not find any defunct processes belonging to 3078097
[2026-02-20 05:16:21] 2026-02-20 03:15:25,879 | INFO     | did not find any defunct processes belonging to 3078097
[2026-02-20 05:16:21] 2026-02-20 03:15:25,879 | INFO     | ready for new job
[2026-02-20 05:16:21] 2026-02-20 03:15:25,879 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-20 05:16:21] 2026-02-20 03:15:25,880 | INFO     | **************************************
[2026-02-20 05:16:21] 2026-02-20 03:15:25,880 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-20 05:16:21] 2026-02-20 03:15:25,880 | INFO     | **************************************
[2026-02-20 05:16:21] 2026-02-20 03:15:25,880 | INFO     | 
[2026-02-20 05:16:21] 2026-02-20 03:15:25,880 | INFO     | architecture information:
[2026-02-20 05:16:21] 2026-02-20 03:15:25,881 | INFO     | executing command: cat /etc/os-release
[2026-02-20 05:16:21] 2026-02-20 03:15:25,886 | INFO     | cat /etc/os-release:
[2026-02-20 05:16:21] NAME="CentOS Linux"
[2026-02-20 05:16:21] VERSION="7 (Core)"
[2026-02-20 05:16:21] ID="centos"
[2026-02-20 05:16:21] ID_LIKE="rhel fedora"
[2026-02-20 05:16:21] VERSION_ID="7"
[2026-02-20 05:16:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-20 05:16:21] ANSI_COLOR="0;31"
[2026-02-20 05:16:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-20 05:16:21] HOME_URL="https://www.centos.org/"
[2026-02-20 05:16:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-20 05:16:21] 
[2026-02-20 05:16:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-20 05:16:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-20 05:16:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-20 05:16:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-20 05:16:21] 
[2026-02-20 05:16:21] 2026-02-20 03:15:25,886 | INFO     | **************************************
[2026-02-20 05:16:21] 2026-02-20 03:15:26,389 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-20 05:16:21] 2026-02-20 03:15:26,395 | INFO     | sufficient remaining disk space (54043607040 B)
[2026-02-20 05:16:21] 2026-02-20 03:15:26,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-20 05:16:21] 2026-02-20 03:15:26,395 | INFO     | current server update state: UPDATING_FINAL
[2026-02-20 05:16:21] 2026-02-20 03:15:26,395 | INFO     | update_server=False
[2026-02-20 05:16:21] 2026-02-20 03:15:26,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-20 05:16:21] 2026-02-20 03:15:26,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-20 05:16:21] 2026-02-20 03:15:26,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-20 05:16:21] 2026-02-20 03:15:26,482 | INFO     | all data control threads have been joined
[2026-02-20 05:16:21] 2026-02-20 03:15:26,739 | INFO     | all job control threads have been joined
[2026-02-20 05:16:21] 2026-02-20 03:15:26,767 | INFO     | all payload control threads have been joined
[2026-02-20 05:16:21] 2026-02-20 03:15:27,293 | WARNING  | process 3078097 can no longer be monitored (due to stat problems) - aborting
[2026-02-20 05:16:21] 2026-02-20 03:15:27,345 | INFO     | using path: /home/ek/BOINC/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-20 05:16:21] 2026-02-20 03:15:27,401 | INFO     | [job] retrieve thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:27,401 | INFO     | [job] queue monitor thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:27,425 | INFO     | number of running child processes to parent process 3078097: 1
[2026-02-20 05:16:21] 2026-02-20 03:15:27,425 | INFO     | maximum number of monitored processes: 6
[2026-02-20 05:16:21] 2026-02-20 03:15:27,425 | INFO     | aborting job monitoring since job object (job id=7018853267) has expired
[2026-02-20 05:16:21] 2026-02-20 03:15:27,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-20 05:16:21] 2026-02-20 03:15:27,425 | INFO     | will abort loop
[2026-02-20 05:16:21] 2026-02-20 03:15:27,488 | INFO     | [data] control thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:27,733 | INFO     | [payload] failed_post thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:27,744 | INFO     | [job] control thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:27,772 | INFO     | [payload] control thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:27,870 | INFO     | [payload] execute_payloads thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,129 | INFO     | [job] validate thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,234 | INFO     | [job] create_data_payload thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,306 | INFO     | [payload] validate_post thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,314 | INFO     | [payload] validate_pre thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,359 | INFO     | [data] copytool_in thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,397 | INFO     | [data] copytool_out thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,430 | INFO     | [job] job monitor thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:28,763 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-20 05:16:21] 2026-02-20 03:15:32,765 | INFO     | [data] queue_monitor thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:37,305 | INFO     | job.realtimelogging is not enabled
[2026-02-20 05:16:21] 2026-02-20 03:15:38,306 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-20 05:16:21] 2026-02-20 03:15:57,256 | INFO     | PID=3073470 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-20 05:16:21] 2026-02-20 03:15:57,257 | INFO     | found 0 job(s) in 20 queues
[2026-02-20 05:16:21] 2026-02-20 03:15:57,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-20 05:16:21] 2026-02-20 03:15:57,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-20 05:16:21] 2026-02-20 03:16:16,092 | INFO     | [monitor] cgroup control has ended
[2026-02-20 05:16:21] 2026-02-20 03:16:16,226 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059551307584)>', '<ExcThread(monitor, started 140059034490624)>']
[2026-02-20 05:16:21] 2026-02-20 03:16:16,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-20 05:16:21] 2026-02-20 03:16:16,334 | INFO     | [monitor] control thread has ended
[2026-02-20 05:16:21] 2026-02-20 03:16:21,246 | INFO     | all workflow threads have been joined
[2026-02-20 05:16:21] 2026-02-20 03:16:21,246 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-20 05:16:21] 2026-02-20 03:16:21,246 | INFO     | traces error code: 0
[2026-02-20 05:16:21] 2026-02-20 03:16:21,246 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-20 05:16:21] 2026-02-20 03:16:21,287 [wrapper] ==== pilot stdout END ====
[2026-02-20 05:16:21] 2026-02-20 03:16:21,288 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-20 05:16:21] 2026-02-20 03:16:21,290 [wrapper] pilotpid: 3073470
[2026-02-20 05:16:21] 2026-02-20 03:16:21,291 [wrapper] Pilot exit status: 0
[2026-02-20 05:16:21] 2026-02-20 03:16:21,296 [wrapper] pandaids: 7018853267
[2026-02-20 05:16:21] 2026-02-20 03:16:21,318 [wrapper] cleanup supervisor_pilot 3155442 3073471
[2026-02-20 05:16:21] 2026-02-20 03:16:21,319 [wrapper] Test setup, not cleaning
[2026-02-20 05:16:21] 2026-02-20 03:16:21,321 [wrapper] apfmon messages muted
[2026-02-20 05:16:21] 2026-02-20 03:16:21,322 [wrapper] ==== wrapper stdout END ====
[2026-02-20 05:16:21] 2026-02-20 03:16:21,323 [wrapper] ==== wrapper stderr END ====
[2026-02-20 05:16:21]  *** Error codes and diagnostics ***
[2026-02-20 05:16:21]     "exeErrorCode": 0,
[2026-02-20 05:16:21]     "exeErrorDiag": "",
[2026-02-20 05:16:21]     "pilotErrorCode": 0,
[2026-02-20 05:16:21]     "pilotErrorDiag": "",
[2026-02-20 05:16:21]  *** Listing of results directory ***
[2026-02-20 05:16:21] total 944752
[2026-02-20 05:16:21] -rw-r--r-- 1 ek ek    584627 Feb 18 04:39 pilot3.tar.gz
[2026-02-20 05:16:21] -rwx------ 1 ek ek     36322 Feb 18 04:42 runpilot2-wrapper.sh
[2026-02-20 05:16:21] -rw-r--r-- 1 ek ek      5111 Feb 18 04:45 queuedata.json
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek       100 Feb 20 03:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-20 05:16:21] -rwxr-xr-x 1 ek ek      7986 Feb 20 03:51 run_atlas
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek       105 Feb 20 03:51 job.xml
[2026-02-20 05:16:21] -rw-r--r-- 2 ek ek 680015690 Feb 20 03:51 EVNT.48508760._000498.pool.root.1
[2026-02-20 05:16:21] -rw-r--r-- 2 ek ek    597965 Feb 20 03:51 input.tar.gz
[2026-02-20 05:16:21] -rw-r--r-- 2 ek ek     15845 Feb 20 03:51 start_atlas.sh
[2026-02-20 05:16:21] drwxrwx--x 2 ek ek      4096 Feb 20 03:51 shared
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek         0 Feb 20 03:51 boinc_setup_complete
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek      9842 Feb 20 03:51 init_data.xml
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek         0 Feb 20 03:51 boinc_lockfile
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek      2551 Feb 20 03:51 pandaJob.out
[2026-02-20 05:16:21] -rw------- 1 ek ek        50 Feb 20 03:51 setup.sh.local
[2026-02-20 05:16:21] -rw------- 1 ek ek   1001559 Feb 20 03:51 agis_schedconf.cvmfs.json
[2026-02-20 05:16:21] -rw------- 1 ek ek   1513015 Feb 20 03:51 agis_ddmendpoints.agis.ALL.json
[2026-02-20 05:16:21] -rw------- 1 ek ek       432 Feb 20 03:51 workernode_map.json
[2026-02-20 05:16:21] drwx------ 5 ek ek      4096 Feb 20 03:51 pilot3
[2026-02-20 05:16:21] -rw------- 1 ek ek 281437988 Feb 20 05:14 HITS.48508763._025464.pool.root.1
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek       530 Feb 20 05:15 boinc_task_state.xml
[2026-02-20 05:16:21] -rw------- 1 ek ek      1025 Feb 20 05:15 memory_monitor_summary.json
[2026-02-20 05:16:21] -rw------- 1 ek ek    274981 Feb 20 05:15 log.48508763._025464.job.log.tgz.1
[2026-02-20 05:16:21] -rw------- 1 ek ek      6329 Feb 20 05:15 heartbeat.json
[2026-02-20 05:16:21] -rw------- 1 ek ek        95 Feb 20 05:15 pilot_heartbeat.json
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek      8192 Feb 20 05:16 boinc_mmap_file
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek        27 Feb 20 05:16 wrapper_checkpoint.txt
[2026-02-20 05:16:21] -rw------- 1 ek ek      5337 Feb 20 05:16 pilotlog.txt
[2026-02-20 05:16:21] -rw------- 1 ek ek    737067 Feb 20 05:16 log.48508763._025464.job.log.1
[2026-02-20 05:16:21] -rw------- 1 ek ek       357 Feb 20 05:16 output.list
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek       620 Feb 20 05:16 runtime_log
[2026-02-20 05:16:21] -rw------- 1 ek ek   1034240 Feb 20 05:16 result.tar.gz
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek      9501 Feb 20 05:16 runtime_log.err
[2026-02-20 05:16:21] -rw------- 1 ek ek       663 Feb 20 05:16 12NODmFhmC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmK0tKDmW1SCnn.diag
[2026-02-20 05:16:21] -rw-rw-r-- 1 ek ek     21208 Feb 20 05:16 stderr.txt
[2026-02-20 05:16:21] HITS file was successfully produced:
[2026-02-20 05:16:21] -rw------- 1 ek ek 281437988 Feb 20 05:14 shared/HITS.pool.root.1
[2026-02-20 05:16:21]  *** Contents of shared directory: ***
[2026-02-20 05:16:21] total 940544
[2026-02-20 05:16:21] -rw-r--r-- 2 ek ek 680015690 Feb 20 03:51 ATLAS.root_0
[2026-02-20 05:16:21] -rw-r--r-- 2 ek ek    597965 Feb 20 03:51 input.tar.gz
[2026-02-20 05:16:21] -rw-r--r-- 2 ek ek     15845 Feb 20 03:51 start_atlas.sh
[2026-02-20 05:16:21] -rw------- 1 ek ek 281437988 Feb 20 05:14 HITS.pool.root.1
[2026-02-20 05:16:21] -rw------- 1 ek ek   1034240 Feb 20 05:16 result.tar.gz
05:16:22 (3069645): run_atlas exited; CPU time 19377.475250
05:16:22 (3069645): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN