Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:02:32 (1019967): wrapper (7.7.26015): starting
00:02:32 (1019967): wrapper: running run_atlas (--nthreads 3)
[2026-02-19 00:02:32] Arguments: --nthreads 3
[2026-02-19 00:02:32] Threads: 3
[2026-02-19 00:02:32] Checking for CVMFS
[2026-02-19 00:02:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-19 00:02:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-19 00:02:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-19 00:02:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-19 00:02:34] 2.9.2.0 241658 5779 82436 156384 0 50 28703547 36864001 0 130560 0 2215448 99.985 191825 14825 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-19 00:02:34] CVMFS is ok
[2026-02-19 00:02:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-19 00:02:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-19 00:02:34] Further information can be found at the LHC@home message board.
[2026-02-19 00:02:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-19 00:02:34] Checking for apptainer binary...
[2026-02-19 00:02:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-19 00:02:34] Running /usr/bin/apptainer --version
[2026-02-19 00:02:34] apptainer version 1.4.1-1.1
[2026-02-19 00:02:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-19 00:02:34] magicA161a
[2026-02-19 00:02:34] apptainer works
[2026-02-19 00:02:34] Set ATHENA_PROC_NUMBER=3
[2026-02-19 00:02:34] Set ATHENA_CORE_NUMBER=3
[2026-02-19 00:02:34] Starting ATLAS job with PandaID=7018862986
[2026-02-19 00:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-19 02:02:58]  *** The last 200 lines of the pilot log: ***
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | job 7018862986 has completed (purged errors)
[2026-02-19 02:02:58] 2026-02-19 01:02:07,988 | INFO     | overall cleanup function is called
[2026-02-19 02:02:58] 2026-02-19 01:02:08,995 | INFO     | --- collectZombieJob: --- 10, [1028427]
[2026-02-19 02:02:58] 2026-02-19 01:02:08,995 | INFO     | zombie collector waiting for pid 1028427
[2026-02-19 02:02:58] 2026-02-19 01:02:08,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-19 02:02:58] 2026-02-19 01:02:08,995 | INFO     | collected zombie processes
[2026-02-19 02:02:58] 2026-02-19 01:02:08,995 | INFO     | will attempt to kill all subprocesses of pid=1028427
[2026-02-19 02:02:58] 2026-02-19 01:02:09,036 | INFO     | process IDs to be killed: [1028427] (in reverse order)
[2026-02-19 02:02:58] 2026-02-19 01:02:09,060 | WARNING  | found no corresponding commands to process id(s)
[2026-02-19 02:02:58] 2026-02-19 01:02:09,060 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-19 02:02:58] 2026-02-19 01:02:09,061 | INFO     | did not find any defunct processes belonging to 1028427
[2026-02-19 02:02:58] 2026-02-19 01:02:09,062 | INFO     | did not find any defunct processes belonging to 1028427
[2026-02-19 02:02:58] 2026-02-19 01:02:09,062 | INFO     | ready for new job
[2026-02-19 02:02:58] 2026-02-19 01:02:09,063 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-19 02:02:58] 2026-02-19 01:02:09,063 | INFO     | **************************************
[2026-02-19 02:02:58] 2026-02-19 01:02:09,063 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-19 02:02:58] 2026-02-19 01:02:09,063 | INFO     | **************************************
[2026-02-19 02:02:58] 2026-02-19 01:02:09,063 | INFO     | 
[2026-02-19 02:02:58] 2026-02-19 01:02:09,064 | INFO     | architecture information:
[2026-02-19 02:02:58] 2026-02-19 01:02:09,064 | INFO     | executing command: cat /etc/os-release
[2026-02-19 02:02:58] 2026-02-19 01:02:09,072 | INFO     | cat /etc/os-release:
[2026-02-19 02:02:58] NAME="CentOS Linux"
[2026-02-19 02:02:58] VERSION="7 (Core)"
[2026-02-19 02:02:58] ID="centos"
[2026-02-19 02:02:58] ID_LIKE="rhel fedora"
[2026-02-19 02:02:58] VERSION_ID="7"
[2026-02-19 02:02:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-19 02:02:58] ANSI_COLOR="0;31"
[2026-02-19 02:02:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-19 02:02:58] HOME_URL="https://www.centos.org/"
[2026-02-19 02:02:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-19 02:02:58] 
[2026-02-19 02:02:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-19 02:02:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-19 02:02:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-19 02:02:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-19 02:02:58] 
[2026-02-19 02:02:58] 2026-02-19 01:02:09,072 | INFO     | **************************************
[2026-02-19 02:02:58] 2026-02-19 01:02:09,576 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-19 02:02:58] 2026-02-19 01:02:09,588 | INFO     | sufficient remaining disk space (371290275840 B)
[2026-02-19 02:02:58] 2026-02-19 01:02:09,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-19 02:02:58] 2026-02-19 01:02:09,588 | INFO     | current server update state: UPDATING_FINAL
[2026-02-19 02:02:58] 2026-02-19 01:02:09,588 | INFO     | update_server=False
[2026-02-19 02:02:58] 2026-02-19 01:02:09,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-19 02:02:58] 2026-02-19 01:02:09,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-19 02:02:58] 2026-02-19 01:02:09,589 | INFO     | aborting loop
[2026-02-19 02:02:58] 2026-02-19 01:02:09,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-19 02:02:58] 2026-02-19 01:02:09,741 | INFO     | all payload control threads have been joined
[2026-02-19 02:02:58] 2026-02-19 01:02:10,267 | INFO     | all data control threads have been joined
[2026-02-19 02:02:58] 2026-02-19 01:02:10,594 | INFO     | [job] retrieve thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:10,594 | INFO     | [job] job monitor thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:10,594 | INFO     | [job] queue monitor thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:10,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-19 02:02:58] 2026-02-19 01:02:10,722 | INFO     | [payload] execute_payloads thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:10,740 | INFO     | [data] copytool_in thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:10,746 | INFO     | [payload] control thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:11,143 | INFO     | [payload] validate_post thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:11,213 | INFO     | all job control threads have been joined
[2026-02-19 02:02:58] 2026-02-19 01:02:11,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-19 02:02:58] 2026-02-19 01:02:11,272 | INFO     | [data] control thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:11,488 | INFO     | [payload] failed_post thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:12,033 | INFO     | [job] create_data_payload thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:12,035 | INFO     | [job] validate thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:12,061 | INFO     | [payload] validate_pre thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:12,218 | INFO     | [job] control thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:12,621 | INFO     | [data] copytool_out thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:15,224 | INFO     | [data] queue_monitor thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:19,843 | INFO     | job.realtimelogging is not enabled
[2026-02-19 02:02:58] 2026-02-19 01:02:20,849 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-19 02:02:58] 2026-02-19 01:02:39,669 | INFO     | PID=1024009 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-19 02:02:58] 2026-02-19 01:02:39,669 | INFO     | found 0 job(s) in 20 queues
[2026-02-19 02:02:58] 2026-02-19 01:02:39,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-19 02:02:58] 2026-02-19 01:02:39,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-19 02:02:58] 2026-02-19 01:02:40,065 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-02-19 02:02:58] 2026-02-19 01:02:52,936 | INFO     | [monitor] cgroup control has ended
[2026-02-19 02:02:58] 2026-02-19 01:02:53,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140582043273024)>', '<ExcThread(monitor, started 140581124699904)>']
[2026-02-19 02:02:58] 2026-02-19 01:02:53,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-19 02:02:58] 2026-02-19 01:02:53,736 | INFO     | [monitor] control thread has ended
[2026-02-19 02:02:58] 2026-02-19 01:02:58,435 | INFO     | all workflow threads have been joined
[2026-02-19 02:02:58] 2026-02-19 01:02:58,435 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-19 02:02:58] 2026-02-19 01:02:58,435 | INFO     | traces error code: 0
[2026-02-19 02:02:58] 2026-02-19 01:02:58,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-19 02:02:58] 2026-02-19 01:02:58,487 [wrapper] ==== pilot stdout END ====
[2026-02-19 02:02:58] 2026-02-19 01:02:58,489 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-19 02:02:58] 2026-02-19 01:02:58,491 [wrapper] pilotpid: 1024009
[2026-02-19 02:02:58] 2026-02-19 01:02:58,494 [wrapper] Pilot exit status: 0
[2026-02-19 02:02:58] 2026-02-19 01:02:58,501 [wrapper] pandaids: 7018862986
[2026-02-19 02:02:58] 2026-02-19 01:02:58,517 [wrapper] cleanup supervisor_pilot 1034569 1024010
[2026-02-19 02:02:58] 2026-02-19 01:02:58,519 [wrapper] Test setup, not cleaning
[2026-02-19 02:02:58] 2026-02-19 01:02:58,521 [wrapper] apfmon messages muted
[2026-02-19 02:02:58] 2026-02-19 01:02:58,524 [wrapper] ==== wrapper stdout END ====
[2026-02-19 02:02:58] 2026-02-19 01:02:58,526 [wrapper] ==== wrapper stderr END ====
[2026-02-19 02:02:58]  *** Error codes and diagnostics ***
[2026-02-19 02:02:58]     "exeErrorCode": 0,
[2026-02-19 02:02:58]     "exeErrorDiag": "",
[2026-02-19 02:02:58]     "pilotErrorCode": 0,
[2026-02-19 02:02:58]     "pilotErrorDiag": "",
[2026-02-19 02:02:58]  *** Listing of results directory ***
[2026-02-19 02:02:58] total 950064
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc    584627 Feb 18 03:39 pilot3.tar.gz
[2026-02-19 02:02:58] -rwx------ 1 boinc boinc     36322 Feb 18 03:39 runpilot2-wrapper.sh
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc      5111 Feb 18 03:41 queuedata.json
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc       100 Feb 19 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-19 02:02:58] -rwxr-xr-x 1 boinc boinc      7986 Feb 19 00:02 run_atlas
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc       105 Feb 19 00:02 job.xml
[2026-02-19 02:02:58] -rw-r--r-- 2 boinc boinc 681005061 Feb 19 00:02 EVNT.48508760._000522.pool.root.1
[2026-02-19 02:02:58] -rw-r--r-- 2 boinc boinc    597953 Feb 19 00:02 input.tar.gz
[2026-02-19 02:02:58] -rw-r--r-- 2 boinc boinc     15845 Feb 19 00:02 start_atlas.sh
[2026-02-19 02:02:58] drwxrwx--x 2 boinc boinc      4096 Feb 19 00:02 shared
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc         0 Feb 19 00:02 boinc_setup_complete
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc      6448 Feb 19 00:02 init_data.xml
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc         0 Feb 19 00:02 boinc_lockfile
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc      2552 Feb 19 00:02 pandaJob.out
[2026-02-19 02:02:58] -rw------- 1 boinc boinc   1001034 Feb 19 00:02 agis_schedconf.cvmfs.json
[2026-02-19 02:02:58] -rw------- 1 boinc boinc   1513015 Feb 19 00:02 agis_ddmendpoints.agis.ALL.json
[2026-02-19 02:02:58] -rw------- 1 boinc boinc       419 Feb 19 00:02 workernode_map.json
[2026-02-19 02:02:58] drwx------ 5 boinc boinc      4096 Feb 19 00:02 pilot3
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc       530 Feb 19 02:01 boinc_task_state.xml
[2026-02-19 02:02:58] -rw------- 1 boinc boinc 285228294 Feb 19 02:01 HITS.48508763._026706.pool.root.1
[2026-02-19 02:02:58] -rw------- 1 boinc boinc      1019 Feb 19 02:02 memory_monitor_summary.json
[2026-02-19 02:02:58] -rw------- 1 boinc boinc    322039 Feb 19 02:02 log.48508763._026706.job.log.tgz.1
[2026-02-19 02:02:58] -rw------- 1 boinc boinc      6301 Feb 19 02:02 heartbeat.json
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc        27 Feb 19 02:02 wrapper_checkpoint.txt
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc      8192 Feb 19 02:02 boinc_mmap_file
[2026-02-19 02:02:58] -rw------- 1 boinc boinc        95 Feb 19 02:02 pilot_heartbeat.json
[2026-02-19 02:02:58] -rw------- 1 boinc boinc      4820 Feb 19 02:02 pilotlog.txt
[2026-02-19 02:02:58] -rw------- 1 boinc boinc   1030397 Feb 19 02:02 log.48508763._026706.job.log.1
[2026-02-19 02:02:58] -rw------- 1 boinc boinc       357 Feb 19 02:02 output.list
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc       620 Feb 19 02:02 runtime_log
[2026-02-19 02:02:58] -rw------- 1 boinc boinc   1372160 Feb 19 02:02 result.tar.gz
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc      8916 Feb 19 02:02 runtime_log.err
[2026-02-19 02:02:58] -rw------- 1 boinc boinc       661 Feb 19 02:02 c98KDmsemC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmSytKDme8cnym.diag
[2026-02-19 02:02:58] -rw-r--r-- 1 boinc boinc     12933 Feb 19 02:02 stderr.txt
[2026-02-19 02:02:58] HITS file was successfully produced:
[2026-02-19 02:02:58] -rw------- 1 boinc boinc 285228294 Feb 19 02:01 shared/HITS.pool.root.1
[2026-02-19 02:02:58]  *** Contents of shared directory: ***
[2026-02-19 02:02:58] total 945540
[2026-02-19 02:02:58] -rw-r--r-- 2 boinc boinc 681005061 Feb 19 00:02 ATLAS.root_0
[2026-02-19 02:02:58] -rw-r--r-- 2 boinc boinc    597953 Feb 19 00:02 input.tar.gz
[2026-02-19 02:02:58] -rw-r--r-- 2 boinc boinc     15845 Feb 19 00:02 start_atlas.sh
[2026-02-19 02:02:58] -rw------- 1 boinc boinc 285228294 Feb 19 02:01 HITS.pool.root.1
[2026-02-19 02:02:58] -rw------- 1 boinc boinc   1372160 Feb 19 02:02 result.tar.gz
02:03:00 (1019967): run_atlas exited; CPU time 20731.722958
02:03:00 (1019967): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN