Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:17:29 (3440485): wrapper (7.7.26015): starting
12:17:29 (3440485): wrapper: running run_atlas (--nthreads 4)
[2026-02-18 12:17:29] Arguments: --nthreads 4
[2026-02-18 12:17:29] Threads: 4
[2026-02-18 12:17:29] Checking for CVMFS
[2026-02-18 12:17:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-18 12:17:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-18 12:17:30] Running cvmfs_config stat atlas.cern.ch
[2026-02-18 12:17:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-18 12:17:30] 2.9.2.0 2553735 5155 95980 156368 2 49 22945009 36864000 0 130560 0 2476035 99.988 167363 20563 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-18 12:17:30] CVMFS is ok
[2026-02-18 12:17:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-18 12:17:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-18 12:17:30] Further information can be found at the LHC@home message board.
[2026-02-18 12:17:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-18 12:17:30] Checking for apptainer binary...
[2026-02-18 12:17:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-18 12:17:30] Running /usr/bin/apptainer --version
[2026-02-18 12:17:30] apptainer version 1.4.1-1.1
[2026-02-18 12:17:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-18 12:17:30] thA317a
[2026-02-18 12:17:30] apptainer works
[2026-02-18 12:17:30] Set ATHENA_PROC_NUMBER=4
[2026-02-18 12:17:30] Set ATHENA_CORE_NUMBER=4
[2026-02-18 12:17:30] Starting ATLAS job with PandaID=7018452024
[2026-02-18 12:17:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-18 14:07:37]  *** The last 200 lines of the pilot log: ***
[2026-02-18 14:07:37] 2026-02-18 12:51:19,025 | INFO     | --- collectZombieJob: --- 10, [3449085]
[2026-02-18 14:07:37] 2026-02-18 12:51:19,026 | INFO     | zombie collector waiting for pid 3449085
[2026-02-18 14:07:37] 2026-02-18 12:51:19,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-18 14:07:37] 2026-02-18 12:51:19,026 | INFO     | collected zombie processes
[2026-02-18 14:07:37] 2026-02-18 12:51:19,026 | INFO     | will attempt to kill all subprocesses of pid=3449085
[2026-02-18 14:07:37] 2026-02-18 12:51:19,093 | INFO     | process IDs to be killed: [3449085] (in reverse order)
[2026-02-18 14:07:37] 2026-02-18 12:51:19,165 | WARNING  | found no corresponding commands to process id(s)
[2026-02-18 14:07:37] 2026-02-18 12:51:19,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-18 14:07:37] 2026-02-18 12:51:19,167 | INFO     | did not find any defunct processes belonging to 3449085
[2026-02-18 14:07:37] 2026-02-18 12:51:19,180 | INFO     | did not find any defunct processes belonging to 3449085
[2026-02-18 14:07:37] 2026-02-18 12:51:19,180 | INFO     | ready for new job
[2026-02-18 14:07:37] 2026-02-18 12:51:19,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-18 14:07:37] 2026-02-18 12:51:19,181 | INFO     | **************************************
[2026-02-18 14:07:37] 2026-02-18 12:51:19,181 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-18 14:07:37] 2026-02-18 12:51:19,181 | INFO     | **************************************
[2026-02-18 14:07:37] 2026-02-18 12:51:19,181 | INFO     | 
[2026-02-18 14:07:37] 2026-02-18 12:51:19,181 | INFO     | architecture information:
[2026-02-18 14:07:37] 2026-02-18 12:51:19,181 | INFO     | executing command: cat /etc/os-release
[2026-02-18 14:07:37] 2026-02-18 12:51:19,232 | INFO     | cat /etc/os-release:
[2026-02-18 14:07:37] NAME="CentOS Linux"
[2026-02-18 14:07:37] VERSION="7 (Core)"
[2026-02-18 14:07:37] ID="centos"
[2026-02-18 14:07:37] ID_LIKE="rhel fedora"
[2026-02-18 14:07:37] VERSION_ID="7"
[2026-02-18 14:07:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-18 14:07:37] ANSI_COLOR="0;31"
[2026-02-18 14:07:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-18 14:07:37] HOME_URL="https://www.centos.org/"
[2026-02-18 14:07:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-18 14:07:37] 
[2026-02-18 14:07:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-18 14:07:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-18 14:07:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-18 14:07:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-18 14:07:37] 
[2026-02-18 14:07:37] 2026-02-18 12:51:19,233 | INFO     | **************************************
[2026-02-18 14:07:37] 2026-02-18 12:51:19,736 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-18 14:07:37] 2026-02-18 12:51:19,799 | INFO     | sufficient remaining disk space (232415821824 B)
[2026-02-18 14:07:37] 2026-02-18 12:51:19,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-18 14:07:37] 2026-02-18 12:51:19,799 | INFO     | current server update state: UPDATING_FINAL
[2026-02-18 14:07:37] 2026-02-18 12:51:19,799 | INFO     | update_server=False
[2026-02-18 14:07:37] 2026-02-18 12:51:19,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-18 14:07:37] 2026-02-18 12:51:19,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-18 14:07:37] 2026-02-18 12:51:19,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-18 14:07:37] 2026-02-18 12:51:19,983 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-18 14:07:37] 2026-02-18 12:51:20,001 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-18 14:07:37] 2026-02-18 12:51:20,001 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-18 14:07:37] 2026-02-18 12:51:20,001 | INFO     | will abort loop
[2026-02-18 14:07:37] 2026-02-18 12:51:19,985 | INFO     | all job control threads have been joined
[2026-02-18 14:07:37] 2026-02-18 12:51:20,532 | INFO     | all data control threads have been joined
[2026-02-18 14:07:37] 2026-02-18 12:51:20,645 | INFO     | all payload control threads have been joined
[2026-02-18 14:07:37] 2026-02-18 12:51:20,805 | INFO     | [job] retrieve thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:20,806 | INFO     | [job] queue monitor thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:20,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-18 14:07:37] 2026-02-18 12:51:21,007 | INFO     | [job] job monitor thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,023 | INFO     | [job] control thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,088 | INFO     | [payload] execute_payloads thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,137 | INFO     | [job] create_data_payload thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,226 | INFO     | [data] copytool_in thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,270 | INFO     | [job] validate thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,309 | INFO     | [payload] validate_post thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,348 | INFO     | [payload] validate_pre thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,539 | INFO     | [data] control thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:21,651 | INFO     | [payload] control thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:22,117 | INFO     | [payload] failed_post thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:22,646 | INFO     | job.realtimelogging is not enabled
[2026-02-18 14:07:37] 2026-02-18 12:51:22,884 | INFO     | [data] copytool_out thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:23,652 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:23,830 | INFO     | [data] queue_monitor thread has finished
[2026-02-18 14:07:37] 2026-02-18 12:51:45,549 | INFO     | [monitor] cgroup control has ended
[2026-02-18 14:07:37] 2026-02-18 12:51:47,154 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139692778108736)>', '<ExcThread(monitor, started 139691999360768)>']
[2026-02-18 14:07:37] 2026-02-18 12:51:49,248 | INFO     | PID=3444588 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-18 14:07:37] 2026-02-18 12:51:49,248 | INFO     | found 0 job(s) in 20 queues
[2026-02-18 14:07:37] 2026-02-18 12:51:49,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-18 14:07:37] 2026-02-18 12:51:49,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-18 14:07:37] 2026-02-18 12:51:49,248 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-18 14:07:37] 2026-02-18 12:51:49,248 | INFO     | [monitor] control thread has ended
[2026-02-18 14:07:37] 2026-02-18 12:51:52,177 | INFO     | all workflow threads have been joined
[2026-02-18 14:07:37] 2026-02-18 12:51:52,177 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-18 14:07:37] 2026-02-18 12:51:52,177 | INFO     | traces error code: 0
[2026-02-18 14:07:37] 2026-02-18 12:51:52,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-18 14:07:37] 2026-02-18 12:51:52,263 [wrapper] ==== pilot stdout END ====
[2026-02-18 14:07:37] 2026-02-18 12:51:52,268 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-18 14:07:37] 2026-02-18 12:51:52,272 [wrapper] pilotpid: 3444588
[2026-02-18 14:07:37] 2026-02-18 12:51:52,277 [wrapper] Pilot exit status: 0
[2026-02-18 14:07:37] 2026-02-18 12:51:52,291 [wrapper] pandaids: 7018452024
[2026-02-18 14:07:37] 2026-02-18 12:51:52,310 [wrapper] cleanup supervisor_pilot 3455650 3444589
[2026-02-18 14:07:37] 2026-02-18 12:51:52,314 [wrapper] Test setup, not cleaning
[2026-02-18 14:07:37] 2026-02-18 12:51:52,318 [wrapper] apfmon messages muted
[2026-02-18 14:07:37] 2026-02-18 12:51:52,323 [wrapper] ==== wrapper stdout END ====
[2026-02-18 14:07:37] 2026-02-18 12:51:52,327 [wrapper] ==== wrapper stderr END ====
[2026-02-18 14:07:37]  *** Error codes and diagnostics ***
[2026-02-18 14:07:37]     "exeErrorCode": 0,
[2026-02-18 14:07:37]     "exeErrorDiag": "",
[2026-02-18 14:07:37]     "pilotErrorCode": 0,
[2026-02-18 14:07:37]     "pilotErrorDiag": "",
[2026-02-18 14:07:37]  *** Listing of results directory ***
[2026-02-18 14:07:37] total 943896
[2026-02-18 14:07:37] -rwx------ 1 boinc boinc     36322 Feb 17 14:40 runpilot2-wrapper.sh
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc    584627 Feb 17 14:43 pilot3.tar.gz
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc      5111 Feb 17 14:44 queuedata.json
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc       100 Feb 18 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-18 14:07:37] -rwxr-xr-x 1 boinc boinc      7986 Feb 18 12:17 run_atlas
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc       105 Feb 18 12:17 job.xml
[2026-02-18 14:07:37] -rw-r--r-- 2 boinc boinc 679124686 Feb 18 12:17 EVNT.48508760._000401.pool.root.1
[2026-02-18 14:07:37] drwxrwx--x 2 boinc boinc      4096 Feb 18 12:17 shared
[2026-02-18 14:07:37] -rw-r--r-- 2 boinc boinc    597960 Feb 18 12:17 input.tar.gz
[2026-02-18 14:07:37] -rw-r--r-- 2 boinc boinc     15845 Feb 18 12:17 start_atlas.sh
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc         0 Feb 18 12:17 boinc_setup_complete
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc      6439 Feb 18 12:17 init_data.xml
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc         0 Feb 18 12:17 boinc_lockfile
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc      2551 Feb 18 12:17 pandaJob.out
[2026-02-18 14:07:37] -rw------- 1 boinc boinc    999722 Feb 18 12:17 agis_schedconf.cvmfs.json
[2026-02-18 14:07:37] -rw------- 1 boinc boinc   1513015 Feb 18 12:17 agis_ddmendpoints.agis.ALL.json
[2026-02-18 14:07:37] -rw------- 1 boinc boinc       424 Feb 18 12:17 workernode_map.json
[2026-02-18 14:07:37] drwx------ 5 boinc boinc      4096 Feb 18 12:17 pilot3
[2026-02-18 14:07:37] -rw------- 1 boinc boinc 281250145 Feb 18 13:50 HITS.48508763._020591.pool.root.1
[2026-02-18 14:07:37] -rw------- 1 boinc boinc        95 Feb 18 13:51 pilot_heartbeat.json
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc       531 Feb 18 13:51 boinc_task_state.xml
[2026-02-18 14:07:37] -rw------- 1 boinc boinc      1037 Feb 18 13:51 memory_monitor_summary.json
[2026-02-18 14:07:37] -rw------- 1 boinc boinc    309122 Feb 18 13:51 log.48508763._020591.job.log.tgz.1
[2026-02-18 14:07:37] -rw------- 1 boinc boinc      6309 Feb 18 13:51 heartbeat.json
[2026-02-18 14:07:37] -rw------- 1 boinc boinc      5006 Feb 18 13:51 pilotlog.txt
[2026-02-18 14:07:37] -rw------- 1 boinc boinc    819007 Feb 18 13:51 log.48508763._020591.job.log.1
[2026-02-18 14:07:37] -rw------- 1 boinc boinc       357 Feb 18 13:51 output.list
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc       620 Feb 18 13:51 runtime_log
[2026-02-18 14:07:37] -rw------- 1 boinc boinc   1146880 Feb 18 13:51 result.tar.gz
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc      8901 Feb 18 13:51 runtime_log.err
[2026-02-18 14:07:37] -rw------- 1 boinc boinc       658 Feb 18 13:51 2fAODmwUaC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmVDtKDmXSNNFn.diag
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc      8192 Feb 18 14:07 boinc_mmap_file
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc        27 Feb 18 14:07 wrapper_checkpoint.txt
[2026-02-18 14:07:37] -rw-r--r-- 1 boinc boinc     10936 Feb 18 14:07 stderr.txt
[2026-02-18 14:07:37] HITS file was successfully produced:
[2026-02-18 14:07:37] -rw------- 1 boinc boinc 281250145 Feb 18 13:50 shared/HITS.pool.root.1
[2026-02-18 14:07:37]  *** Contents of shared directory: ***
[2026-02-18 14:07:37] total 939596
[2026-02-18 14:07:37] -rw-r--r-- 2 boinc boinc 679124686 Feb 18 12:17 ATLAS.root_0
[2026-02-18 14:07:37] -rw-r--r-- 2 boinc boinc    597960 Feb 18 12:17 input.tar.gz
[2026-02-18 14:07:37] -rw-r--r-- 2 boinc boinc     15845 Feb 18 12:17 start_atlas.sh
[2026-02-18 14:07:37] -rw------- 1 boinc boinc 281250145 Feb 18 13:50 HITS.pool.root.1
[2026-02-18 14:07:37] -rw------- 1 boinc boinc   1146880 Feb 18 13:51 result.tar.gz
14:07:39 (3440485): run_atlas exited; CPU time 21303.474480
14:07:39 (3440485): called boinc_finish(0)

</stderr_txt>
]]>

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