Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:45:22 (327422): wrapper (7.7.26015): starting
23:45:22 (327422): wrapper: running run_atlas (--nthreads 3)
[2026-02-17 23:45:22] Arguments: --nthreads 3
[2026-02-17 23:45:22] Threads: 3
[2026-02-17 23:45:22] Checking for CVMFS
[2026-02-17 23:45:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-17 23:45:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-17 23:45:23] Running cvmfs_config stat atlas.cern.ch
[2026-02-17 23:45:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-17 23:45:23] 2.9.2.0 4025606 4275 72512 156345 0 50 21098719 36864001 0 130560 0 1380716 99.982 134925 18755 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-17 23:45:23] CVMFS is ok
[2026-02-17 23:45:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-17 23:45:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-17 23:45:23] Further information can be found at the LHC@home message board.
[2026-02-17 23:45:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-17 23:45:23] Checking for apptainer binary...
[2026-02-17 23:45:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-17 23:45:23] Running /usr/bin/apptainer --version
[2026-02-17 23:45:23] apptainer version 1.4.1-1.1
[2026-02-17 23:45:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-17 23:45:23] atlasA221b
[2026-02-17 23:45:23] apptainer works
[2026-02-17 23:45:23] Set ATHENA_PROC_NUMBER=3
[2026-02-17 23:45:23] Set ATHENA_CORE_NUMBER=3
[2026-02-17 23:45:23] Starting ATLAS job with PandaID=7017761825
[2026-02-17 23:45:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-18 01:59:56]  *** The last 200 lines of the pilot log: ***
[2026-02-18 01:59:56] 2026-02-18 00:58:50,915 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,915 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | job 7017761825 has completed (purged errors)
[2026-02-18 01:59:56] 2026-02-18 00:58:50,916 | INFO     | overall cleanup function is called
[2026-02-18 01:59:56] 2026-02-18 00:58:51,923 | INFO     | --- collectZombieJob: --- 10, [335902]
[2026-02-18 01:59:56] 2026-02-18 00:58:51,923 | INFO     | zombie collector waiting for pid 335902
[2026-02-18 01:59:56] 2026-02-18 00:58:51,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-18 01:59:56] 2026-02-18 00:58:51,924 | INFO     | collected zombie processes
[2026-02-18 01:59:56] 2026-02-18 00:58:51,924 | INFO     | will attempt to kill all subprocesses of pid=335902
[2026-02-18 01:59:56] 2026-02-18 00:58:51,978 | INFO     | process IDs to be killed: [335902] (in reverse order)
[2026-02-18 01:59:56] 2026-02-18 00:58:52,009 | WARNING  | found no corresponding commands to process id(s)
[2026-02-18 01:59:56] 2026-02-18 00:58:52,009 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-18 01:59:56] 2026-02-18 00:58:52,010 | INFO     | did not find any defunct processes belonging to 335902
[2026-02-18 01:59:56] 2026-02-18 00:58:52,012 | INFO     | did not find any defunct processes belonging to 335902
[2026-02-18 01:59:56] 2026-02-18 00:58:52,012 | INFO     | ready for new job
[2026-02-18 01:59:56] 2026-02-18 00:58:52,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-18 01:59:56] 2026-02-18 00:58:52,012 | INFO     | **************************************
[2026-02-18 01:59:56] 2026-02-18 00:58:52,012 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-18 01:59:56] 2026-02-18 00:58:52,012 | INFO     | **************************************
[2026-02-18 01:59:56] 2026-02-18 00:58:52,013 | INFO     | 
[2026-02-18 01:59:56] 2026-02-18 00:58:52,013 | INFO     | architecture information:
[2026-02-18 01:59:56] 2026-02-18 00:58:52,013 | INFO     | executing command: cat /etc/os-release
[2026-02-18 01:59:56] 2026-02-18 00:58:52,023 | INFO     | cat /etc/os-release:
[2026-02-18 01:59:56] NAME="CentOS Linux"
[2026-02-18 01:59:56] VERSION="7 (Core)"
[2026-02-18 01:59:56] ID="centos"
[2026-02-18 01:59:56] ID_LIKE="rhel fedora"
[2026-02-18 01:59:56] VERSION_ID="7"
[2026-02-18 01:59:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-18 01:59:56] ANSI_COLOR="0;31"
[2026-02-18 01:59:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-18 01:59:56] HOME_URL="https://www.centos.org/"
[2026-02-18 01:59:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-18 01:59:56] 
[2026-02-18 01:59:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-18 01:59:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-18 01:59:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-18 01:59:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-18 01:59:56] 
[2026-02-18 01:59:56] 2026-02-18 00:58:52,023 | INFO     | **************************************
[2026-02-18 01:59:56] 2026-02-18 00:58:52,526 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-18 01:59:56] 2026-02-18 00:58:52,539 | INFO     | sufficient remaining disk space (335815901184 B)
[2026-02-18 01:59:56] 2026-02-18 00:58:52,539 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-18 01:59:56] 2026-02-18 00:58:52,539 | INFO     | current server update state: UPDATING_FINAL
[2026-02-18 01:59:56] 2026-02-18 00:58:52,539 | INFO     | update_server=False
[2026-02-18 01:59:56] 2026-02-18 00:58:52,539 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-18 01:59:56] 2026-02-18 00:58:52,739 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-18 01:59:56] 2026-02-18 00:58:52,842 | INFO     | all payload control threads have been joined
[2026-02-18 01:59:56] 2026-02-18 00:58:53,229 | INFO     | all data control threads have been joined
[2026-02-18 01:59:56] 2026-02-18 00:58:53,352 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-18 01:59:56] 2026-02-18 00:58:53,352 | INFO     | aborting loop
[2026-02-18 01:59:56] 2026-02-18 00:58:53,545 | INFO     | [job] retrieve thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:53,739 | INFO     | [data] copytool_in thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:53,848 | INFO     | [payload] control thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:53,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-18 01:59:56] 2026-02-18 00:58:54,179 | INFO     | all job control threads have been joined
[2026-02-18 01:59:56] 2026-02-18 00:58:54,234 | INFO     | [data] control thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:54,343 | INFO     | [payload] failed_post thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:54,357 | INFO     | [job] job monitor thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:54,505 | INFO     | [payload] execute_payloads thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:54,744 | INFO     | [data] copytool_out thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:54,866 | INFO     | [job] create_data_payload thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:54,907 | INFO     | [job] validate thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:54,960 | INFO     | [payload] validate_pre thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:55,053 | INFO     | [payload] validate_post thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:55,184 | INFO     | [job] control thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:55,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-18 01:59:56] 2026-02-18 00:58:56,445 | INFO     | [job] queue monitor thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:58:57,863 | INFO     | [data] queue_monitor thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:59:02,804 | INFO     | job.realtimelogging is not enabled
[2026-02-18 01:59:56] 2026-02-18 00:59:03,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-18 01:59:56] 2026-02-18 00:59:22,538 | INFO     | PID=331467 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-18 01:59:56] 2026-02-18 00:59:22,538 | INFO     | found 0 job(s) in 20 queues
[2026-02-18 01:59:56] 2026-02-18 00:59:22,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-18 01:59:56] 2026-02-18 00:59:22,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-18 01:59:56] 2026-02-18 00:59:50,225 | INFO     | [monitor] cgroup control has ended
[2026-02-18 01:59:56] 2026-02-18 00:59:50,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394910328640)>', '<ExcThread(monitor, started 140394411054848)>']
[2026-02-18 01:59:56] 2026-02-18 00:59:51,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-18 01:59:56] 2026-02-18 00:59:51,685 | INFO     | [monitor] control thread has ended
[2026-02-18 01:59:56] 2026-02-18 00:59:55,892 | INFO     | all workflow threads have been joined
[2026-02-18 01:59:56] 2026-02-18 00:59:55,893 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-18 01:59:56] 2026-02-18 00:59:55,893 | INFO     | traces error code: 0
[2026-02-18 01:59:56] 2026-02-18 00:59:55,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-18 01:59:56] 2026-02-18 00:59:55,978 [wrapper] ==== pilot stdout END ====
[2026-02-18 01:59:56] 2026-02-18 00:59:55,981 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-18 01:59:56] 2026-02-18 00:59:55,984 [wrapper] pilotpid: 331467
[2026-02-18 01:59:56] 2026-02-18 00:59:55,987 [wrapper] Pilot exit status: 0
[2026-02-18 01:59:56] 2026-02-18 00:59:55,995 [wrapper] pandaids: 7017761825
[2026-02-18 01:59:56] 2026-02-18 00:59:56,014 [wrapper] cleanup supervisor_pilot  341997 331468
[2026-02-18 01:59:56] 2026-02-18 00:59:56,017 [wrapper] Test setup, not cleaning
[2026-02-18 01:59:56] 2026-02-18 00:59:56,020 [wrapper] apfmon messages muted
[2026-02-18 01:59:56] 2026-02-18 00:59:56,022 [wrapper] ==== wrapper stdout END ====
[2026-02-18 01:59:56] 2026-02-18 00:59:56,025 [wrapper] ==== wrapper stderr END ====
[2026-02-18 01:59:56]  *** Error codes and diagnostics ***
[2026-02-18 01:59:56]     "exeErrorCode": 0,
[2026-02-18 01:59:56]     "exeErrorDiag": "",
[2026-02-18 01:59:56]     "pilotErrorCode": 0,
[2026-02-18 01:59:56]     "pilotErrorDiag": "",
[2026-02-18 01:59:56]  *** Listing of results directory ***
[2026-02-18 01:59:56] total 460668
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc    584627 Feb 17 04:54 pilot3.tar.gz
[2026-02-18 01:59:56] -rwx------ 1 boinc boinc     36322 Feb 17 04:59 runpilot2-wrapper.sh
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc      5111 Feb 17 05:02 queuedata.json
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc       100 Feb 17 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-18 01:59:56] -rwxr-xr-x 1 boinc boinc      7986 Feb 17 23:45 run_atlas
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc       105 Feb 17 23:45 job.xml
[2026-02-18 01:59:56] -rw-r--r-- 2 boinc boinc 276410111 Feb 17 23:45 EVNT.48610891._000024.pool.root.1
[2026-02-18 01:59:56] -rw-r--r-- 2 boinc boinc    597987 Feb 17 23:45 input.tar.gz
[2026-02-18 01:59:56] -rw-r--r-- 2 boinc boinc     15845 Feb 17 23:45 start_atlas.sh
[2026-02-18 01:59:56] drwxrwx--x 2 boinc boinc      4096 Feb 17 23:45 shared
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc         0 Feb 17 23:45 boinc_setup_complete
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc      6199 Feb 17 23:45 init_data.xml
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc         0 Feb 17 23:45 boinc_lockfile
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc      2637 Feb 17 23:45 pandaJob.out
[2026-02-18 01:59:56] -rw------- 1 boinc boinc    999364 Feb 17 23:45 agis_schedconf.cvmfs.json
[2026-02-18 01:59:56] -rw------- 1 boinc boinc   1513015 Feb 17 23:45 agis_ddmendpoints.agis.ALL.json
[2026-02-18 01:59:56] -rw------- 1 boinc boinc       430 Feb 17 23:45 workernode_map.json
[2026-02-18 01:59:56] drwx------ 5 boinc boinc      4096 Feb 17 23:45 pilot3
[2026-02-18 01:59:56] -rw------- 1 boinc boinc 188477907 Feb 18 01:58 HITS.48610894._001971.pool.root.1
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc       529 Feb 18 01:58 boinc_task_state.xml
[2026-02-18 01:59:56] -rw------- 1 boinc boinc      1018 Feb 18 01:58 memory_monitor_summary.json
[2026-02-18 01:59:56] -rw------- 1 boinc boinc    311728 Feb 18 01:58 log.48610894._001971.job.log.tgz.1
[2026-02-18 01:59:56] -rw------- 1 boinc boinc      6310 Feb 18 01:58 heartbeat.json
[2026-02-18 01:59:56] -rw------- 1 boinc boinc        95 Feb 18 01:59 pilot_heartbeat.json
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc      8192 Feb 18 01:59 boinc_mmap_file
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc        27 Feb 18 01:59 wrapper_checkpoint.txt
[2026-02-18 01:59:56] -rw------- 1 boinc boinc      4819 Feb 18 01:59 pilotlog.txt
[2026-02-18 01:59:56] -rw------- 1 boinc boinc   1145053 Feb 18 01:59 log.48610894._001971.job.log.1
[2026-02-18 01:59:56] -rw------- 1 boinc boinc       357 Feb 18 01:59 output.list
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc       620 Feb 18 01:59 runtime_log
[2026-02-18 01:59:56] -rw------- 1 boinc boinc   1474560 Feb 18 01:59 result.tar.gz
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc      8916 Feb 18 01:59 runtime_log.err
[2026-02-18 01:59:56] -rw------- 1 boinc boinc       661 Feb 18 01:59 Kb8LDmxPRC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmlEsKDmsih9Uo.diag
[2026-02-18 01:59:56] -rw-r--r-- 1 boinc boinc     12916 Feb 18 01:59 stderr.txt
[2026-02-18 01:59:56] HITS file was successfully produced:
[2026-02-18 01:59:56] -rw------- 1 boinc boinc 188477907 Feb 18 01:58 shared/HITS.pool.root.1
[2026-02-18 01:59:56]  *** Contents of shared directory: ***
[2026-02-18 01:59:56] total 456044
[2026-02-18 01:59:56] -rw-r--r-- 2 boinc boinc 276410111 Feb 17 23:45 ATLAS.root_0
[2026-02-18 01:59:56] -rw-r--r-- 2 boinc boinc    597987 Feb 17 23:45 input.tar.gz
[2026-02-18 01:59:56] -rw-r--r-- 2 boinc boinc     15845 Feb 17 23:45 start_atlas.sh
[2026-02-18 01:59:56] -rw------- 1 boinc boinc 188477907 Feb 18 01:58 HITS.pool.root.1
[2026-02-18 01:59:56] -rw------- 1 boinc boinc   1474560 Feb 18 01:59 result.tar.gz
01:59:57 (327422): run_atlas exited; CPU time 23280.033159
01:59:57 (327422): called boinc_finish(0)

</stderr_txt>
]]>

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