Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:49:30 (1611753): wrapper (7.7.26015): starting
13:49:30 (1611753): wrapper: running run_atlas (--nthreads 4)
[2026-02-17 13:49:30] Arguments: --nthreads 4
[2026-02-17 13:49:30] Threads: 4
[2026-02-17 13:49:30] Checking for CVMFS
[2026-02-17 13:49:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-17 13:49:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-17 13:49:30] Running cvmfs_config stat atlas.cern.ch
[2026-02-17 13:49:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-17 13:49:30] 2.9.2.0 1046581 3631 98332 156322 3 50 26410877 36864001 0 130560 0 1486259 99.986 103855 18306 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-17 13:49:30] CVMFS is ok
[2026-02-17 13:49:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-17 13:49:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-17 13:49:30] Further information can be found at the LHC@home message board.
[2026-02-17 13:49:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-17 13:49:30] Checking for apptainer binary...
[2026-02-17 13:49:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-17 13:49:30] Running /usr/bin/apptainer --version
[2026-02-17 13:49:30] apptainer version 1.4.1-1.1
[2026-02-17 13:49:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-17 13:49:30] thA309
[2026-02-17 13:49:30] apptainer works
[2026-02-17 13:49:30] Set ATHENA_PROC_NUMBER=4
[2026-02-17 13:49:30] Set ATHENA_CORE_NUMBER=4
[2026-02-17 13:49:30] Starting ATLAS job with PandaID=7014507968
[2026-02-17 13:49:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-17 15:32:57]  *** The last 200 lines of the pilot log: ***
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | job 7014507968 has completed (purged errors)
[2026-02-17 15:32:57] 2026-02-17 14:32:18,695 | INFO     | overall cleanup function is called
[2026-02-17 15:32:57] 2026-02-17 14:32:19,702 | INFO     | --- collectZombieJob: --- 10, [1620379]
[2026-02-17 15:32:57] 2026-02-17 14:32:19,702 | INFO     | zombie collector waiting for pid 1620379
[2026-02-17 15:32:57] 2026-02-17 14:32:19,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-17 15:32:57] 2026-02-17 14:32:19,703 | INFO     | collected zombie processes
[2026-02-17 15:32:57] 2026-02-17 14:32:19,703 | INFO     | will attempt to kill all subprocesses of pid=1620379
[2026-02-17 15:32:57] 2026-02-17 14:32:19,753 | INFO     | process IDs to be killed: [1620379] (in reverse order)
[2026-02-17 15:32:57] 2026-02-17 14:32:19,789 | WARNING  | found no corresponding commands to process id(s)
[2026-02-17 15:32:57] 2026-02-17 14:32:19,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-17 15:32:57] 2026-02-17 14:32:19,791 | INFO     | did not find any defunct processes belonging to 1620379
[2026-02-17 15:32:57] 2026-02-17 14:32:19,793 | INFO     | did not find any defunct processes belonging to 1620379
[2026-02-17 15:32:57] 2026-02-17 14:32:19,793 | INFO     | ready for new job
[2026-02-17 15:32:57] 2026-02-17 14:32:19,793 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-17 15:32:57] 2026-02-17 14:32:19,794 | INFO     | **************************************
[2026-02-17 15:32:57] 2026-02-17 14:32:19,794 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-17 15:32:57] 2026-02-17 14:32:19,794 | INFO     | **************************************
[2026-02-17 15:32:57] 2026-02-17 14:32:19,794 | INFO     | 
[2026-02-17 15:32:57] 2026-02-17 14:32:19,794 | INFO     | architecture information:
[2026-02-17 15:32:57] 2026-02-17 14:32:19,795 | INFO     | executing command: cat /etc/os-release
[2026-02-17 15:32:57] 2026-02-17 14:32:19,809 | INFO     | cat /etc/os-release:
[2026-02-17 15:32:57] NAME="CentOS Linux"
[2026-02-17 15:32:57] VERSION="7 (Core)"
[2026-02-17 15:32:57] ID="centos"
[2026-02-17 15:32:57] ID_LIKE="rhel fedora"
[2026-02-17 15:32:57] VERSION_ID="7"
[2026-02-17 15:32:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-17 15:32:57] ANSI_COLOR="0;31"
[2026-02-17 15:32:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-17 15:32:57] HOME_URL="https://www.centos.org/"
[2026-02-17 15:32:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-17 15:32:57] 
[2026-02-17 15:32:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-17 15:32:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-17 15:32:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-17 15:32:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-17 15:32:57] 
[2026-02-17 15:32:57] 2026-02-17 14:32:19,809 | INFO     | **************************************
[2026-02-17 15:32:57] 2026-02-17 14:32:20,312 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-17 15:32:57] 2026-02-17 14:32:20,330 | INFO     | sufficient remaining disk space (228841226240 B)
[2026-02-17 15:32:57] 2026-02-17 14:32:20,331 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-17 15:32:57] 2026-02-17 14:32:20,331 | INFO     | current server update state: UPDATING_FINAL
[2026-02-17 15:32:57] 2026-02-17 14:32:20,331 | INFO     | update_server=False
[2026-02-17 15:32:57] 2026-02-17 14:32:20,331 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-17 15:32:57] 2026-02-17 14:32:20,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-17 15:32:57] 2026-02-17 14:32:20,418 | INFO     | all payload control threads have been joined
[2026-02-17 15:32:57] 2026-02-17 14:32:20,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-17 15:32:57] 2026-02-17 14:32:20,578 | INFO     | aborting loop
[2026-02-17 15:32:57] 2026-02-17 14:32:20,847 | INFO     | all data control threads have been joined
[2026-02-17 15:32:57] 2026-02-17 14:32:21,336 | INFO     | [job] retrieve thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,355 | INFO     | [payload] validate_post thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,362 | INFO     | [job] create_data_payload thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,409 | INFO     | [payload] validate_pre thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,424 | INFO     | [payload] control thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,583 | INFO     | [job] job monitor thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,609 | INFO     | [data] copytool_in thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,728 | INFO     | all job control threads have been joined
[2026-02-17 15:32:57] 2026-02-17 14:32:21,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:21,848 | INFO     | [data] control thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:22,134 | INFO     | [payload] failed_post thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:22,337 | INFO     | [data] copytool_out thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:22,508 | INFO     | [payload] execute_payloads thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:22,734 | INFO     | [job] control thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:22,765 | INFO     | [job] validate thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:23,051 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-17 15:32:57] 2026-02-17 14:32:23,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-17 15:32:57] 2026-02-17 14:32:24,235 | INFO     | [job] queue monitor thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:27,058 | INFO     | [data] queue_monitor thread has finished
[2026-02-17 15:32:57] 2026-02-17 14:32:49,432 | INFO     | 6160s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-17 15:32:57] 2026-02-17 14:32:50,504 | INFO     | PID=1615860 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-17 15:32:57] 2026-02-17 14:32:50,505 | INFO     | found 0 job(s) in 20 queues
[2026-02-17 15:32:57] 2026-02-17 14:32:50,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-17 15:32:57] 2026-02-17 14:32:50,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-17 15:32:57] 2026-02-17 14:32:51,311 | INFO     | [monitor] cgroup control has ended
[2026-02-17 15:32:57] 2026-02-17 14:32:52,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140464962750272)>', '<ExcThread(monitor, started 140464304920320)>']
[2026-02-17 15:32:57] 2026-02-17 14:32:52,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-17 15:32:57] 2026-02-17 14:32:52,516 | INFO     | [monitor] control thread has ended
[2026-02-17 15:32:57] 2026-02-17 14:32:57,285 | INFO     | all workflow threads have been joined
[2026-02-17 15:32:57] 2026-02-17 14:32:57,286 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-17 15:32:57] 2026-02-17 14:32:57,286 | INFO     | traces error code: 0
[2026-02-17 15:32:57] 2026-02-17 14:32:57,286 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-17 15:32:57] 2026-02-17 14:32:57,366 [wrapper] ==== pilot stdout END ====
[2026-02-17 15:32:57] 2026-02-17 14:32:57,370 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-17 15:32:57] 2026-02-17 14:32:57,374 [wrapper] pilotpid: 1615860
[2026-02-17 15:32:57] 2026-02-17 14:32:57,378 [wrapper] Pilot exit status: 0
[2026-02-17 15:32:57] 2026-02-17 14:32:57,390 [wrapper] pandaids: 7014507968
[2026-02-17 15:32:57] 2026-02-17 14:32:57,414 [wrapper] cleanup supervisor_pilot 1626535 1615861
[2026-02-17 15:32:57] 2026-02-17 14:32:57,418 [wrapper] Test setup, not cleaning
[2026-02-17 15:32:57] 2026-02-17 14:32:57,421 [wrapper] apfmon messages muted
[2026-02-17 15:32:57] 2026-02-17 14:32:57,425 [wrapper] ==== wrapper stdout END ====
[2026-02-17 15:32:57] 2026-02-17 14:32:57,429 [wrapper] ==== wrapper stderr END ====
[2026-02-17 15:32:57]  *** Error codes and diagnostics ***
[2026-02-17 15:32:57]     "exeErrorCode": 0,
[2026-02-17 15:32:57]     "exeErrorDiag": "",
[2026-02-17 15:32:57]     "pilotErrorCode": 0,
[2026-02-17 15:32:57]     "pilotErrorDiag": "",
[2026-02-17 15:32:57]  *** Listing of results directory ***
[2026-02-17 15:32:57] total 941020
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc    584627 Feb 16 15:40 pilot3.tar.gz
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc      5111 Feb 16 15:43 queuedata.json
[2026-02-17 15:32:57] -rwx------ 1 boinc boinc     36322 Feb 16 15:43 runpilot2-wrapper.sh
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc       100 Feb 17 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-17 15:32:57] -rwxr-xr-x 1 boinc boinc      7986 Feb 17 13:49 run_atlas
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc       105 Feb 17 13:49 job.xml
[2026-02-17 15:32:57] -rw-r--r-- 2 boinc boinc 682216884 Feb 17 13:49 EVNT.48508760._000248.pool.root.1
[2026-02-17 15:32:57] drwxrwx--x 2 boinc boinc      4096 Feb 17 13:49 shared
[2026-02-17 15:32:57] -rw-r--r-- 2 boinc boinc    597952 Feb 17 13:49 input.tar.gz
[2026-02-17 15:32:57] -rw-r--r-- 2 boinc boinc     15845 Feb 17 13:49 start_atlas.sh
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc         0 Feb 17 13:49 boinc_setup_complete
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc      6377 Feb 17 13:49 init_data.xml
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc         0 Feb 17 13:49 boinc_lockfile
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc      2552 Feb 17 13:49 pandaJob.out
[2026-02-17 15:32:57] -rw------- 1 boinc boinc   1000322 Feb 17 13:49 agis_schedconf.cvmfs.json
[2026-02-17 15:32:57] -rw------- 1 boinc boinc   1513015 Feb 17 13:49 agis_ddmendpoints.agis.ALL.json
[2026-02-17 15:32:57] -rw------- 1 boinc boinc       418 Feb 17 13:49 workernode_map.json
[2026-02-17 15:32:57] drwx------ 5 boinc boinc      4096 Feb 17 13:49 pilot3
[2026-02-17 15:32:57] -rw------- 1 boinc boinc 275042437 Feb 17 15:31 HITS.48508763._012594.pool.root.1
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc       530 Feb 17 15:31 boinc_task_state.xml
[2026-02-17 15:32:57] -rw------- 1 boinc boinc      1020 Feb 17 15:32 memory_monitor_summary.json
[2026-02-17 15:32:57] -rw------- 1 boinc boinc        95 Feb 17 15:32 pilot_heartbeat.json
[2026-02-17 15:32:57] -rw------- 1 boinc boinc    317139 Feb 17 15:32 log.48508763._012594.job.log.tgz.1
[2026-02-17 15:32:57] -rw------- 1 boinc boinc      6309 Feb 17 15:32 heartbeat.json
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc      8192 Feb 17 15:32 boinc_mmap_file
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc        27 Feb 17 15:32 wrapper_checkpoint.txt
[2026-02-17 15:32:57] -rw------- 1 boinc boinc      4863 Feb 17 15:32 pilotlog.txt
[2026-02-17 15:32:57] -rw------- 1 boinc boinc    891499 Feb 17 15:32 log.48508763._012594.job.log.1
[2026-02-17 15:32:57] -rw------- 1 boinc boinc       357 Feb 17 15:32 output.list
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc       620 Feb 17 15:32 runtime_log
[2026-02-17 15:32:57] -rw------- 1 boinc boinc   1228800 Feb 17 15:32 result.tar.gz
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc      8896 Feb 17 15:32 runtime_log.err
[2026-02-17 15:32:57] -rw------- 1 boinc boinc       657 Feb 17 15:32 1KbNDmI0EC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmgIrKDmr4hyMm.diag
[2026-02-17 15:32:57] -rw-r--r-- 1 boinc boinc     12586 Feb 17 15:32 stderr.txt
[2026-02-17 15:32:57] HITS file was successfully produced:
[2026-02-17 15:32:57] -rw------- 1 boinc boinc 275042437 Feb 17 15:31 shared/HITS.pool.root.1
[2026-02-17 15:32:57]  *** Contents of shared directory: ***
[2026-02-17 15:32:57] total 936636
[2026-02-17 15:32:57] -rw-r--r-- 2 boinc boinc 682216884 Feb 17 13:49 ATLAS.root_0
[2026-02-17 15:32:57] -rw-r--r-- 2 boinc boinc    597952 Feb 17 13:49 input.tar.gz
[2026-02-17 15:32:57] -rw-r--r-- 2 boinc boinc     15845 Feb 17 13:49 start_atlas.sh
[2026-02-17 15:32:57] -rw------- 1 boinc boinc 275042437 Feb 17 15:31 HITS.pool.root.1
[2026-02-17 15:32:57] -rw------- 1 boinc boinc   1228800 Feb 17 15:32 result.tar.gz
15:32:59 (1611753): run_atlas exited; CPU time 23427.843521
15:32:59 (1611753): called boinc_finish(0)

</stderr_txt>
]]>

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