Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:18:25 (1581171): wrapper (7.7.26015): starting
10:18:25 (1581171): wrapper: running run_atlas (--nthreads 4)
[2026-02-17 10:18:25] Arguments: --nthreads 4
[2026-02-17 10:18:25] Threads: 4
[2026-02-17 10:18:25] Checking for CVMFS
[2026-02-17 10:18:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-17 10:18:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-17 10:18:26] Running cvmfs_config stat atlas.cern.ch
[2026-02-17 10:18:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-17 10:18:26] 2.9.2.0 1046581 3420 97532 156316 2 49 26372646 36864000 0 130560 0 1405664 99.987 95554 17744 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-17 10:18:26] CVMFS is ok
[2026-02-17 10:18:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-17 10:18:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-17 10:18:26] Further information can be found at the LHC@home message board.
[2026-02-17 10:18:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-17 10:18:26] Checking for apptainer binary...
[2026-02-17 10:18:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-17 10:18:26] Running /usr/bin/apptainer --version
[2026-02-17 10:18:26] apptainer version 1.4.1-1.1
[2026-02-17 10:18:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-17 10:18:26] thA309
[2026-02-17 10:18:26] apptainer works
[2026-02-17 10:18:26] Set ATHENA_PROC_NUMBER=4
[2026-02-17 10:18:26] Set ATHENA_CORE_NUMBER=4
[2026-02-17 10:18:26] Starting ATLAS job with PandaID=7014171933
[2026-02-17 10:18:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-17 12:03:54]  *** The last 200 lines of the pilot log: ***
[2026-02-17 12:03:54] 2026-02-17 11:03:19,888 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,888 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,888 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,888 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | job 7014171933 has completed (purged errors)
[2026-02-17 12:03:54] 2026-02-17 11:03:19,889 | INFO     | overall cleanup function is called
[2026-02-17 12:03:54] 2026-02-17 11:03:20,896 | INFO     | --- collectZombieJob: --- 10, [1589787]
[2026-02-17 12:03:54] 2026-02-17 11:03:20,896 | INFO     | zombie collector waiting for pid 1589787
[2026-02-17 12:03:54] 2026-02-17 11:03:20,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-17 12:03:54] 2026-02-17 11:03:20,896 | INFO     | collected zombie processes
[2026-02-17 12:03:54] 2026-02-17 11:03:20,896 | INFO     | will attempt to kill all subprocesses of pid=1589787
[2026-02-17 12:03:54] 2026-02-17 11:03:20,946 | INFO     | process IDs to be killed: [1589787] (in reverse order)
[2026-02-17 12:03:54] 2026-02-17 11:03:20,981 | WARNING  | found no corresponding commands to process id(s)
[2026-02-17 12:03:54] 2026-02-17 11:03:20,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-17 12:03:54] 2026-02-17 11:03:20,984 | INFO     | did not find any defunct processes belonging to 1589787
[2026-02-17 12:03:54] 2026-02-17 11:03:20,985 | INFO     | did not find any defunct processes belonging to 1589787
[2026-02-17 12:03:54] 2026-02-17 11:03:20,985 | INFO     | ready for new job
[2026-02-17 12:03:54] 2026-02-17 11:03:20,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-17 12:03:54] 2026-02-17 11:03:20,986 | INFO     | **************************************
[2026-02-17 12:03:54] 2026-02-17 11:03:20,986 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-17 12:03:54] 2026-02-17 11:03:20,986 | INFO     | **************************************
[2026-02-17 12:03:54] 2026-02-17 11:03:20,986 | INFO     | 
[2026-02-17 12:03:54] 2026-02-17 11:03:20,987 | INFO     | architecture information:
[2026-02-17 12:03:54] 2026-02-17 11:03:20,987 | INFO     | executing command: cat /etc/os-release
[2026-02-17 12:03:54] 2026-02-17 11:03:21,001 | INFO     | cat /etc/os-release:
[2026-02-17 12:03:54] NAME="CentOS Linux"
[2026-02-17 12:03:54] VERSION="7 (Core)"
[2026-02-17 12:03:54] ID="centos"
[2026-02-17 12:03:54] ID_LIKE="rhel fedora"
[2026-02-17 12:03:54] VERSION_ID="7"
[2026-02-17 12:03:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-17 12:03:54] ANSI_COLOR="0;31"
[2026-02-17 12:03:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-17 12:03:54] HOME_URL="https://www.centos.org/"
[2026-02-17 12:03:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-17 12:03:54] 
[2026-02-17 12:03:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-17 12:03:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-17 12:03:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-17 12:03:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-17 12:03:54] 
[2026-02-17 12:03:54] 2026-02-17 11:03:21,002 | INFO     | **************************************
[2026-02-17 12:03:54] 2026-02-17 11:03:21,505 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | INFO     | sufficient remaining disk space (228854857728 B)
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | INFO     | current server update state: UPDATING_FINAL
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | INFO     | update_server=False
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | INFO     | aborting loop
[2026-02-17 12:03:54] 2026-02-17 11:03:21,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-17 12:03:54] 2026-02-17 11:03:21,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-17 12:03:54] 2026-02-17 11:03:21,888 | INFO     | all payload control threads have been joined
[2026-02-17 12:03:54] 2026-02-17 11:03:21,988 | INFO     | all data control threads have been joined
[2026-02-17 12:03:54] 2026-02-17 11:03:22,529 | INFO     | [job] retrieve thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:22,529 | INFO     | [job] job monitor thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:22,631 | INFO     | [payload] validate_post thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:22,640 | INFO     | [payload] validate_pre thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:22,694 | INFO     | [data] copytool_in thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:22,894 | INFO     | all job control threads have been joined
[2026-02-17 12:03:54] 2026-02-17 11:03:22,894 | INFO     | [payload] control thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:22,993 | INFO     | [data] control thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:23,395 | INFO     | [payload] execute_payloads thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:23,568 | INFO     | [data] copytool_out thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:23,706 | INFO     | [payload] failed_post thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:23,862 | INFO     | [job] validate thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:23,900 | INFO     | [job] control thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:23,994 | INFO     | [job] create_data_payload thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:24,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-17 12:03:54] 2026-02-17 11:03:25,448 | INFO     | [job] queue monitor thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:25,530 | INFO     | [data] queue_monitor thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:32,222 | INFO     | job.realtimelogging is not enabled
[2026-02-17 12:03:54] 2026-02-17 11:03:33,228 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-17 12:03:54] 2026-02-17 11:03:34,830 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-02-17 12:03:54] 2026-02-17 11:03:47,410 | INFO     | [monitor] cgroup control has ended
[2026-02-17 12:03:54] 2026-02-17 11:03:49,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139778704668480)>', '<ExcThread(monitor, started 139777663809280)>']
[2026-02-17 12:03:54] 2026-02-17 11:03:51,531 | INFO     | PID=1585279 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-17 12:03:54] 2026-02-17 11:03:51,531 | INFO     | found 0 job(s) in 20 queues
[2026-02-17 12:03:54] 2026-02-17 11:03:51,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-17 12:03:54] 2026-02-17 11:03:51,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-17 12:03:54] 2026-02-17 11:03:51,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-17 12:03:54] 2026-02-17 11:03:51,531 | INFO     | [monitor] control thread has ended
[2026-02-17 12:03:54] 2026-02-17 11:03:54,317 | INFO     | all workflow threads have been joined
[2026-02-17 12:03:54] 2026-02-17 11:03:54,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-17 12:03:54] 2026-02-17 11:03:54,317 | INFO     | traces error code: 0
[2026-02-17 12:03:54] 2026-02-17 11:03:54,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-17 12:03:54] 2026-02-17 11:03:54,398 [wrapper] ==== pilot stdout END ====
[2026-02-17 12:03:54] 2026-02-17 11:03:54,402 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-17 12:03:54] 2026-02-17 11:03:54,406 [wrapper] pilotpid: 1585279
[2026-02-17 12:03:54] 2026-02-17 11:03:54,410 [wrapper] Pilot exit status: 0
[2026-02-17 12:03:54] 2026-02-17 11:03:54,422 [wrapper] pandaids: 7014171933
[2026-02-17 12:03:54] 2026-02-17 11:03:54,446 [wrapper] cleanup supervisor_pilot 1596258 1585280
[2026-02-17 12:03:54] 2026-02-17 11:03:54,450 [wrapper] Test setup, not cleaning
[2026-02-17 12:03:54] 2026-02-17 11:03:54,454 [wrapper] apfmon messages muted
[2026-02-17 12:03:54] 2026-02-17 11:03:54,458 [wrapper] ==== wrapper stdout END ====
[2026-02-17 12:03:54] 2026-02-17 11:03:54,462 [wrapper] ==== wrapper stderr END ====
[2026-02-17 12:03:54]  *** Error codes and diagnostics ***
[2026-02-17 12:03:54]     "exeErrorCode": 0,
[2026-02-17 12:03:54]     "exeErrorDiag": "",
[2026-02-17 12:03:54]     "pilotErrorCode": 0,
[2026-02-17 12:03:54]     "pilotErrorDiag": "",
[2026-02-17 12:03:54]  *** Listing of results directory ***
[2026-02-17 12:03:54] total 945668
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc    584627 Feb 16 12:56 pilot3.tar.gz
[2026-02-17 12:03:54] -rwx------ 1 boinc boinc     36322 Feb 16 12:59 runpilot2-wrapper.sh
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc      5111 Feb 16 13:03 queuedata.json
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc       100 Feb 17 10:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-17 12:03:54] -rwxr-xr-x 1 boinc boinc      7986 Feb 17 10:18 run_atlas
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc       105 Feb 17 10:18 job.xml
[2026-02-17 12:03:54] -rw-r--r-- 2 boinc boinc 680563644 Feb 17 10:18 EVNT.48508760._000210.pool.root.1
[2026-02-17 12:03:54] -rw-r--r-- 2 boinc boinc    597954 Feb 17 10:18 input.tar.gz
[2026-02-17 12:03:54] -rw-r--r-- 2 boinc boinc     15845 Feb 17 10:18 start_atlas.sh
[2026-02-17 12:03:54] drwxrwx--x 2 boinc boinc      4096 Feb 17 10:18 shared
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc         0 Feb 17 10:18 boinc_setup_complete
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc      6377 Feb 17 10:18 init_data.xml
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc         0 Feb 17 10:18 boinc_lockfile
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc      2551 Feb 17 10:18 pandaJob.out
[2026-02-17 12:03:54] -rw------- 1 boinc boinc   1001121 Feb 17 10:18 agis_schedconf.cvmfs.json
[2026-02-17 12:03:54] -rw------- 1 boinc boinc   1513015 Feb 17 10:18 agis_ddmendpoints.agis.ALL.json
[2026-02-17 12:03:54] -rw------- 1 boinc boinc       427 Feb 17 10:18 workernode_map.json
[2026-02-17 12:03:54] drwx------ 5 boinc boinc      4096 Feb 17 10:18 pilot3
[2026-02-17 12:03:54] -rw------- 1 boinc boinc 281459928 Feb 17 12:02 HITS.48508763._010673.pool.root.1
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc       530 Feb 17 12:02 boinc_task_state.xml
[2026-02-17 12:03:54] -rw------- 1 boinc boinc        95 Feb 17 12:03 pilot_heartbeat.json
[2026-02-17 12:03:54] -rw------- 1 boinc boinc      1024 Feb 17 12:03 memory_monitor_summary.json
[2026-02-17 12:03:54] -rw------- 1 boinc boinc    302813 Feb 17 12:03 log.48508763._010673.job.log.tgz.1
[2026-02-17 12:03:54] -rw------- 1 boinc boinc      6322 Feb 17 12:03 heartbeat.json
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc      8192 Feb 17 12:03 boinc_mmap_file
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc        27 Feb 17 12:03 wrapper_checkpoint.txt
[2026-02-17 12:03:54] -rw------- 1 boinc boinc      4820 Feb 17 12:03 pilotlog.txt
[2026-02-17 12:03:54] -rw------- 1 boinc boinc    908044 Feb 17 12:03 log.48508763._010673.job.log.1
[2026-02-17 12:03:54] -rw------- 1 boinc boinc       357 Feb 17 12:03 output.list
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc       620 Feb 17 12:03 runtime_log
[2026-02-17 12:03:54] -rw------- 1 boinc boinc   1228800 Feb 17 12:03 result.tar.gz
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc      8896 Feb 17 12:03 runtime_log.err
[2026-02-17 12:03:54] -rw------- 1 boinc boinc       657 Feb 17 12:03 rE3LDmWRCC9n9Rq4apOajLDm4fhM0noT9bVooX4SDmL4qKDmZ2dq0m.diag
[2026-02-17 12:03:54] -rw-r--r-- 1 boinc boinc     12225 Feb 17 12:03 stderr.txt
[2026-02-17 12:03:54] HITS file was successfully produced:
[2026-02-17 12:03:54] -rw------- 1 boinc boinc 281459928 Feb 17 12:02 shared/HITS.pool.root.1
[2026-02-17 12:03:54]  *** Contents of shared directory: ***
[2026-02-17 12:03:54] total 941288
[2026-02-17 12:03:54] -rw-r--r-- 2 boinc boinc 680563644 Feb 17 10:18 ATLAS.root_0
[2026-02-17 12:03:54] -rw-r--r-- 2 boinc boinc    597954 Feb 17 10:18 input.tar.gz
[2026-02-17 12:03:54] -rw-r--r-- 2 boinc boinc     15845 Feb 17 10:18 start_atlas.sh
[2026-02-17 12:03:54] -rw------- 1 boinc boinc 281459928 Feb 17 12:02 HITS.pool.root.1
[2026-02-17 12:03:54] -rw------- 1 boinc boinc   1228800 Feb 17 12:03 result.tar.gz
12:03:56 (1581171): run_atlas exited; CPU time 24032.488512
12:03:56 (1581171): called boinc_finish(0)

</stderr_txt>
]]>

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