Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:02 (4122636): wrapper (7.7.26015): starting
09:53:02 (4122636): wrapper: running run_atlas (--nthreads 2)
[2026-02-17 09:53:02] Arguments: --nthreads 2
[2026-02-17 09:53:02] Threads: 2
[2026-02-17 09:53:02] Checking for CVMFS
[2026-02-17 09:53:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-17 09:53:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-17 09:53:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-17 09:53:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-17 09:53:02] 2.9.2.0 3848407 3404 58552 156315 2 50 24389137 36864001 0 130560 0 826451 99.978 98088 19131 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-17 09:53:02] CVMFS is ok
[2026-02-17 09:53:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-17 09:53:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-17 09:53:02] Further information can be found at the LHC@home message board.
[2026-02-17 09:53:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-17 09:53:02] Checking for apptainer binary...
[2026-02-17 09:53:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-17 09:53:02] Running /usr/bin/apptainer --version
[2026-02-17 09:53:02] apptainer version 1.4.1-1.1
[2026-02-17 09:53:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-17 09:53:02] thA337
[2026-02-17 09:53:02] apptainer works
[2026-02-17 09:53:02] Set ATHENA_PROC_NUMBER=2
[2026-02-17 09:53:02] Set ATHENA_CORE_NUMBER=2
[2026-02-17 09:53:02] Starting ATLAS job with PandaID=7014195921
[2026-02-17 09:53:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-17 12:54:44]  *** The last 200 lines of the pilot log: ***
[2026-02-17 12:54:44] 2026-02-17 11:53:37,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,496 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | job 7014195921 has completed (purged errors)
[2026-02-17 12:54:44] 2026-02-17 11:53:37,497 | INFO     | overall cleanup function is called
[2026-02-17 12:54:44] 2026-02-17 11:53:38,503 | INFO     | --- collectZombieJob: --- 10, [4131066]
[2026-02-17 12:54:44] 2026-02-17 11:53:38,503 | INFO     | zombie collector waiting for pid 4131066
[2026-02-17 12:54:44] 2026-02-17 11:53:38,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-17 12:54:44] 2026-02-17 11:53:38,504 | INFO     | collected zombie processes
[2026-02-17 12:54:44] 2026-02-17 11:53:38,504 | INFO     | will attempt to kill all subprocesses of pid=4131066
[2026-02-17 12:54:44] 2026-02-17 11:53:38,534 | INFO     | process IDs to be killed: [4131066] (in reverse order)
[2026-02-17 12:54:44] 2026-02-17 11:53:38,554 | WARNING  | found no corresponding commands to process id(s)
[2026-02-17 12:54:44] 2026-02-17 11:53:38,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-17 12:54:44] 2026-02-17 11:53:38,555 | INFO     | did not find any defunct processes belonging to 4131066
[2026-02-17 12:54:44] 2026-02-17 11:53:38,556 | INFO     | did not find any defunct processes belonging to 4131066
[2026-02-17 12:54:44] 2026-02-17 11:53:38,556 | INFO     | ready for new job
[2026-02-17 12:54:44] 2026-02-17 11:53:38,556 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-17 12:54:44] 2026-02-17 11:53:38,556 | INFO     | **************************************
[2026-02-17 12:54:44] 2026-02-17 11:53:38,556 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-17 12:54:44] 2026-02-17 11:53:38,557 | INFO     | **************************************
[2026-02-17 12:54:44] 2026-02-17 11:53:38,557 | INFO     | 
[2026-02-17 12:54:44] 2026-02-17 11:53:38,557 | INFO     | architecture information:
[2026-02-17 12:54:44] 2026-02-17 11:53:38,557 | INFO     | executing command: cat /etc/os-release
[2026-02-17 12:54:44] 2026-02-17 11:53:38,564 | INFO     | cat /etc/os-release:
[2026-02-17 12:54:44] NAME="CentOS Linux"
[2026-02-17 12:54:44] VERSION="7 (Core)"
[2026-02-17 12:54:44] ID="centos"
[2026-02-17 12:54:44] ID_LIKE="rhel fedora"
[2026-02-17 12:54:44] VERSION_ID="7"
[2026-02-17 12:54:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-17 12:54:44] ANSI_COLOR="0;31"
[2026-02-17 12:54:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-17 12:54:44] HOME_URL="https://www.centos.org/"
[2026-02-17 12:54:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-17 12:54:44] 
[2026-02-17 12:54:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-17 12:54:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-17 12:54:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-17 12:54:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-17 12:54:44] 
[2026-02-17 12:54:44] 2026-02-17 11:53:38,565 | INFO     | **************************************
[2026-02-17 12:54:44] 2026-02-17 11:53:39,068 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-17 12:54:44] 2026-02-17 11:53:39,079 | INFO     | sufficient remaining disk space (484265951232 B)
[2026-02-17 12:54:44] 2026-02-17 11:53:39,079 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-17 12:54:44] 2026-02-17 11:53:39,079 | INFO     | current server update state: UPDATING_FINAL
[2026-02-17 12:54:44] 2026-02-17 11:53:39,079 | INFO     | update_server=False
[2026-02-17 12:54:44] 2026-02-17 11:53:39,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-17 12:54:44] 2026-02-17 11:53:39,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-17 12:54:44] 2026-02-17 11:53:39,080 | INFO     | aborting loop
[2026-02-17 12:54:44] 2026-02-17 11:53:39,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-17 12:54:44] 2026-02-17 11:53:39,080 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-17 12:54:44] 2026-02-17 11:53:39,277 | INFO     | all data control threads have been joined
[2026-02-17 12:54:44] 2026-02-17 11:53:39,404 | INFO     | all payload control threads have been joined
[2026-02-17 12:54:44] 2026-02-17 11:53:40,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-17 12:54:44] 2026-02-17 11:53:40,083 | INFO     | [job] queue monitor thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,085 | INFO     | [job] retrieve thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,085 | INFO     | [job] job monitor thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,128 | INFO     | [payload] validate_pre thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,138 | INFO     | all job control threads have been joined
[2026-02-17 12:54:44] 2026-02-17 11:53:40,160 | INFO     | [job] create_data_payload thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,231 | INFO     | [data] copytool_in thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,283 | INFO     | [data] control thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,410 | INFO     | [payload] control thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:40,656 | INFO     | [payload] failed_post thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:41,139 | INFO     | [job] control thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:41,143 | INFO     | [payload] execute_payloads thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:41,460 | INFO     | [job] validate thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:41,673 | INFO     | [payload] validate_post thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:42,088 | INFO     | [data] copytool_out thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:43,087 | INFO     | [data] queue_monitor thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:53:49,929 | INFO     | job.realtimelogging is not enabled
[2026-02-17 12:54:44] 2026-02-17 11:53:50,935 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-17 12:54:44] 2026-02-17 11:54:09,077 | INFO     | PID=4126660 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-17 12:54:44] 2026-02-17 11:54:09,077 | INFO     | found 0 job(s) in 20 queues
[2026-02-17 12:54:44] 2026-02-17 11:54:09,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-17 12:54:44] 2026-02-17 11:54:09,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-17 12:54:44] 2026-02-17 11:54:38,858 | INFO     | [monitor] cgroup control has ended
[2026-02-17 12:54:44] 2026-02-17 11:54:38,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129448322880)>', '<ExcThread(monitor, started 140128727062272)>']
[2026-02-17 12:54:44] 2026-02-17 11:54:39,235 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-17 12:54:44] 2026-02-17 11:54:39,235 | INFO     | [monitor] control thread has ended
[2026-02-17 12:54:44] 2026-02-17 11:54:44,010 | INFO     | all workflow threads have been joined
[2026-02-17 12:54:44] 2026-02-17 11:54:44,011 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-17 12:54:44] 2026-02-17 11:54:44,012 | INFO     | traces error code: 0
[2026-02-17 12:54:44] 2026-02-17 11:54:44,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-17 12:54:44] 2026-02-17 11:54:44,053 [wrapper] ==== pilot stdout END ====
[2026-02-17 12:54:44] 2026-02-17 11:54:44,055 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-17 12:54:44] 2026-02-17 11:54:44,057 [wrapper] pilotpid: 4126660
[2026-02-17 12:54:44] 2026-02-17 11:54:44,059 [wrapper] Pilot exit status: 0
[2026-02-17 12:54:44] 2026-02-17 11:54:44,064 [wrapper] pandaids: 7014195921
[2026-02-17 12:54:44] 2026-02-17 11:54:44,076 [wrapper] cleanup supervisor_pilot 4137186 4126661
[2026-02-17 12:54:44] 2026-02-17 11:54:44,079 [wrapper] Test setup, not cleaning
[2026-02-17 12:54:44] 2026-02-17 11:54:44,081 [wrapper] apfmon messages muted
[2026-02-17 12:54:44] 2026-02-17 11:54:44,083 [wrapper] ==== wrapper stdout END ====
[2026-02-17 12:54:44] 2026-02-17 11:54:44,085 [wrapper] ==== wrapper stderr END ====
[2026-02-17 12:54:44]  *** Error codes and diagnostics ***
[2026-02-17 12:54:44]     "exeErrorCode": 0,
[2026-02-17 12:54:44]     "exeErrorDiag": "",
[2026-02-17 12:54:44]     "pilotErrorCode": 0,
[2026-02-17 12:54:44]     "pilotErrorDiag": "",
[2026-02-17 12:54:44]  *** Listing of results directory ***
[2026-02-17 12:54:44] total 944780
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc    584627 Feb 16 12:56 pilot3.tar.gz
[2026-02-17 12:54:44] -rwx------ 1 boinc boinc     36322 Feb 16 12:57 runpilot2-wrapper.sh
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc      5111 Feb 16 12:58 queuedata.json
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc       100 Feb 17 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-17 12:54:44] -rwxr-xr-x 1 boinc boinc      7986 Feb 17 09:53 run_atlas
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc       105 Feb 17 09:53 job.xml
[2026-02-17 12:54:44] -rw-r--r-- 2 boinc boinc 681729830 Feb 17 09:53 EVNT.48508760._000216.pool.root.1
[2026-02-17 12:54:44] -rw-r--r-- 2 boinc boinc    597948 Feb 17 09:53 input.tar.gz
[2026-02-17 12:54:44] -rw-r--r-- 2 boinc boinc     15845 Feb 17 09:53 start_atlas.sh
[2026-02-17 12:54:44] drwxrwx--x 2 boinc boinc      4096 Feb 17 09:53 shared
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc         0 Feb 17 09:53 boinc_setup_complete
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc      6206 Feb 17 09:53 init_data.xml
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc         0 Feb 17 09:53 boinc_lockfile
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc      2552 Feb 17 09:53 pandaJob.out
[2026-02-17 12:54:44] -rw------- 1 boinc boinc   1001121 Feb 17 09:53 agis_schedconf.cvmfs.json
[2026-02-17 12:54:44] -rw------- 1 boinc boinc       425 Feb 17 09:53 workernode_map.json
[2026-02-17 12:54:44] drwx------ 5 boinc boinc      4096 Feb 17 09:53 pilot3
[2026-02-17 12:54:44] -rw------- 1 boinc boinc 278012927 Feb 17 12:53 HITS.48508763._010991.pool.root.1
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc       531 Feb 17 12:53 boinc_task_state.xml
[2026-02-17 12:54:44] -rw------- 1 boinc boinc      1016 Feb 17 12:53 memory_monitor_summary.json
[2026-02-17 12:54:44] -rw------- 1 boinc boinc   1513015 Feb 17 12:53 agis_ddmendpoints.agis.ALL.json
[2026-02-17 12:54:44] -rw------- 1 boinc boinc    355798 Feb 17 12:53 log.48508763._010991.job.log.tgz.1
[2026-02-17 12:54:44] -rw------- 1 boinc boinc      6307 Feb 17 12:53 heartbeat.json
[2026-02-17 12:54:44] -rw------- 1 boinc boinc        95 Feb 17 12:54 pilot_heartbeat.json
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc        28 Feb 17 12:54 wrapper_checkpoint.txt
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc      8192 Feb 17 12:54 boinc_mmap_file
[2026-02-17 12:54:44] -rw------- 1 boinc boinc      4820 Feb 17 12:54 pilotlog.txt
[2026-02-17 12:54:44] -rw------- 1 boinc boinc   1538842 Feb 17 12:54 log.48508763._010991.job.log.1
[2026-02-17 12:54:44] -rw------- 1 boinc boinc       357 Feb 17 12:54 output.list
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc       620 Feb 17 12:54 runtime_log
[2026-02-17 12:54:44] -rw------- 1 boinc boinc   1914880 Feb 17 12:54 result.tar.gz
[2026-02-17 12:54:44] -rw------- 1 boinc boinc       659 Feb 17 12:54 oqYLDm1OCC9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmW7rKDmT9SGCn.diag
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc      8897 Feb 17 12:54 runtime_log.err
[2026-02-17 12:54:44] -rw-r--r-- 1 boinc boinc     12230 Feb 17 12:54 stderr.txt
[2026-02-17 12:54:44] HITS file was successfully produced:
[2026-02-17 12:54:44] -rw------- 1 boinc boinc 278012927 Feb 17 12:53 shared/HITS.pool.root.1
[2026-02-17 12:54:44]  *** Contents of shared directory: ***
[2026-02-17 12:54:44] total 939732
[2026-02-17 12:54:44] -rw-r--r-- 2 boinc boinc 681729830 Feb 17 09:53 ATLAS.root_0
[2026-02-17 12:54:44] -rw-r--r-- 2 boinc boinc    597948 Feb 17 09:53 input.tar.gz
[2026-02-17 12:54:44] -rw-r--r-- 2 boinc boinc     15845 Feb 17 09:53 start_atlas.sh
[2026-02-17 12:54:44] -rw------- 1 boinc boinc 278012927 Feb 17 12:53 HITS.pool.root.1
[2026-02-17 12:54:44] -rw------- 1 boinc boinc   1914880 Feb 17 12:54 result.tar.gz
12:54:45 (4122636): run_atlas exited; CPU time 21192.375968
12:54:45 (4122636): called boinc_finish(0)

</stderr_txt>
]]>

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