Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:29:00 (1087517): wrapper (7.7.26015): starting
06:29:00 (1087517): wrapper: running run_atlas (--nthreads 12)
[2026-02-16 06:29:00] Arguments: --nthreads 12
[2026-02-16 06:29:00] Threads: 12
[2026-02-16 06:29:00] Checking for CVMFS
[2026-02-16 06:29:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 06:29:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 06:29:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 06:29:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 06:29:04] 2.11.5.0 1139287 111406 227596 156286 3 236 37509510 45568001 20457 130560 0 689981296 99.819 390676580 18280 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-02-16 06:29:04] CVMFS is ok
[2026-02-16 06:29:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-16 06:29:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-16 06:29:04] Further information can be found at the LHC@home message board.
[2026-02-16 06:29:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 06:29:04] Checking for apptainer binary...
[2026-02-16 06:29:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 06:29:04] Running /usr/bin/apptainer --version
[2026-02-16 06:29:04] apptainer version 1.4.1-1.el9
[2026-02-16 06:29:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 06:29:05] wns0042.triumf.lcg
[2026-02-16 06:29:05] apptainer works
[2026-02-16 06:29:05] Set ATHENA_PROC_NUMBER=12
[2026-02-16 06:29:05] Set ATHENA_CORE_NUMBER=12
[2026-02-16 06:29:06] Starting ATLAS job with PandaID=7013074314
[2026-02-16 06:29:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-16 06:36:42]  *** The last 200 lines of the pilot log: ***
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | WARNING  | wrong length of table data, x=[1771252333.0, 1771252394.0], y=[1101.0, 605076.0] (must be same and length>=4)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | could have reported an average CPU frequency of 1407 MHz (4 samples)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | ..............................
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | . Timing measurements:
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . get job = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . initial setup = 41 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . payload setup = 42 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . stage-in = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . payload execution = 117 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . stage-out = 1 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . log creation = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | ..............................
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-16 06:36:42] 2026-02-16 14:35:32,370 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7013074314/pilotlog.txt
[2026-02-16 06:36:42] 2026-02-16 14:35:32,434 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-16 06:36:42] - Log from pilotlog.txt -
[2026-02-16 06:36:42] 2026-02-16 14:35:32,366 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7013074314/memory_monitor_summary.json (trf name=prmon)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | INFO     | extracted standard info from prmon json
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | INFO     | extracted standard memory fields from prmon json
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | WARNING  | wrong length of table data, x=[1771252333.0, 1771252394.0], y=[1101.0, 605076.0] (must be same and length>=4)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | could have reported an average CPU frequency of 1407 MHz (4 samples)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | ..............................
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | . Timing measurements:
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . get job = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . initial setup = 41 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . payload setup = 42 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . stage-in = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . payload execution = 117 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . stage-out = 1 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . log creation = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | ..............................
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-16 06:36:42] 2026-02-16 14:35:32,370 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7013074314/pilotlog.txt
[2026-02-16 06:36:42] 2026-02-16 14:35:32,435 | WARNING  | 
[2026-02-16 06:36:42] [begin log extracts]
[2026-02-16 06:36:42] - Log from pilotlog.txt -
[2026-02-16 06:36:42] 2026-02-16 14:35:32,366 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7013074314/memory_monitor_summary.json (trf name=prmon)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | INFO     | extracted standard info from prmon json
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | INFO     | extracted standard memory fields from prmon json
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-16 06:36:42] 2026-02-16 14:35:32,367 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | WARNING  | wrong length of table data, x=[1771252333.0, 1771252394.0], y=[1101.0, 605076.0] (must be same and length>=4)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | could have reported an average CPU frequency of 1407 MHz (4 samples)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | ..............................
[2026-02-16 06:36:42] 2026-02-16 14:35:32,368 | INFO     | . Timing measurements:
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . get job = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . initial setup = 41 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . payload setup = 42 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . stage-in = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . payload execution = 117 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . stage-out = 1 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | . log creation = 0 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | ..............................
[2026-02-16 06:36:42] 2026-02-16 14:35:32,369 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-16 06:36:42] 2026-02-16 14:35:32,370 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7013074314/pilotlog.txt
[2026-02-16 06:36:42] [end log extracts]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,435 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,436 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-02-16 06:36:42] 2026-02-16 14:35:32,776 | INFO     | 
[2026-02-16 06:36:42] 2026-02-16 14:35:32,776 | INFO     | job summary report
[2026-02-16 06:36:42] 2026-02-16 14:35:32,776 | INFO     | --------------------------------------------------
[2026-02-16 06:36:42] 2026-02-16 14:35:32,776 | INFO     | PanDA job id: 7013074314
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | task id: 48508763
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-16 06:33:20,052 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | pilot state: failed 
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | transexitcode: 65
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | exeerrorcode: 65
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | exitcode: 65
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | cpuconsumptiontime: 22 s
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | nevents: 0
[2026-02-16 06:36:42] 2026-02-16 14:35:32,777 | INFO     | neventsw: 0
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | pid: 1101225
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | pgrp: 1101225
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | corecount: 12
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | event service: False
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | sizes: {0: 2281166, 1: 2281848, 2: 2282309, 13: 2282309, 164: 2305594, 165: 2305570, 167: 2310074, 285: 2310240}
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | --------------------------------------------------
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | 
[2026-02-16 06:36:42] 2026-02-16 14:35:32,778 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-02-16 06:36:42] 2026-02-16 14:35:32,968 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,969 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,969 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,969 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,970 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-16 06:36:42] 2026-02-16 14:35:32,971 | INFO     | job 7013074314 has completed (purged errors)
[2026-02-16 06:36:42] 2026-02-16 14:35:32,971 | INFO     | overall cleanup function is called
[2026-02-16 06:36:42] 2026-02-16 14:35:34,005 | INFO     | --- collectZombieJob: --- 10, [1101225]
[2026-02-16 06:36:42] 2026-02-16 14:35:34,005 | INFO     | zombie collector waiting for pid 1101225
[2026-02-16 06:36:42] 2026-02-16 14:35:34,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-16 06:36:42] 2026-02-16 14:35:34,005 | INFO     | collected zombie processes
[2026-02-16 06:36:42] 2026-02-16 14:35:34,006 | INFO     | will attempt to kill all subprocesses of pid=1101225
[2026-02-16 06:36:42] 2026-02-16 14:35:34,835 | INFO     | process IDs to be killed: [1101225] (in reverse order)
[2026-02-16 06:36:42] 2026-02-16 14:35:35,436 | WARNING  | found no corresponding commands to process id(s)
[2026-02-16 06:36:42] 2026-02-16 14:35:35,441 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-16 06:36:42] 2026-02-16 14:35:35,520 | INFO     | did not find any defunct processes belonging to 1101225
[2026-02-16 06:36:42] 2026-02-16 14:35:35,556 | INFO     | did not find any defunct processes belonging to 1101225
[2026-02-16 06:36:42] 2026-02-16 14:35:35,557 | INFO     | ready for new job
[2026-02-16 06:36:42] 2026-02-16 14:35:35,557 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-16 06:36:42] 2026-02-16 14:35:35,559 | INFO     | **************************************
[2026-02-16 06:36:42] 2026-02-16 14:35:35,559 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-16 06:36:42] 2026-02-16 14:35:35,559 | INFO     | **************************************
[2026-02-16 06:36:42] 2026-02-16 14:35:35,559 | INFO     | 
[2026-02-16 06:36:42] 2026-02-16 14:35:35,563 | INFO     | architecture information:
[2026-02-16 06:36:42] 2026-02-16 14:35:35,563 | INFO     | executing command: cat /etc/os-release
[2026-02-16 06:36:42] 2026-02-16 14:35:35,581 | INFO     | cat /etc/os-release:
[2026-02-16 06:36:42] NAME="CentOS Linux"
[2026-02-16 06:36:42] VERSION="7 (Core)"
[2026-02-16 06:36:42] ID="centos"
[2026-02-16 06:36:42] ID_LIKE="rhel fedora"
[2026-02-16 06:36:42] VERSION_ID="7"
[2026-02-16 06:36:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-16 06:36:42] ANSI_COLOR="0;31"
[2026-02-16 06:36:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-16 06:36:42] HOME_URL="https://www.centos.org/"
[2026-02-16 06:36:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-16 06:36:42] 
[2026-02-16 06:36:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-16 06:36:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-16 06:36:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-16 06:36:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-16 06:36:42] 
[2026-02-16 06:36:42] 2026-02-16 14:35:35,582 | INFO     | **************************************
[2026-02-16 06:36:42] 2026-02-16 14:35:36,085 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-02-16 06:36:42] 2026-02-16 14:35:36,142 | INFO     | sufficient remaining disk space (2083196502016 B)
[2026-02-16 06:36:42] 2026-02-16 14:35:36,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-16 06:36:42] 2026-02-16 14:35:36,142 | INFO     | current server update state: UPDATING_FINAL
[2026-02-16 06:36:42] 2026-02-16 14:35:36,142 | INFO     | update_server=False
[2026-02-16 06:36:42] 2026-02-16 14:35:36,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-16 06:36:42] 2026-02-16 14:35:36,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-16 06:36:42] 2026-02-16 14:35:36,240 | INFO     | all data control threads have been joined
[2026-02-16 06:36:42] 2026-02-16 14:35:36,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-16 06:36:42] 2026-02-16 14:35:36,443 | INFO     | aborting loop
[2026-02-16 06:36:42] 2026-02-16 14:35:36,742 | INFO     | all job control threads have been joined
[2026-02-16 06:36:42] 2026-02-16 14:35:37,148 | INFO     | [job] retrieve thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:37,249 | INFO     | [data] control thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:37,314 | INFO     | all payload control threads have been joined
[2026-02-16 06:36:42] 2026-02-16 14:35:37,381 | INFO     | [payload] validate_post thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:37,451 | INFO     | [job] job monitor thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:37,606 | INFO     | [payload] validate_pre thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:37,748 | INFO     | [job] control thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:37,793 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-16 06:36:42] 2026-02-16 14:35:37,943 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,026 | INFO     | [payload] failed_post thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,162 | INFO     | [data] copytool_out thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,320 | INFO     | [payload] control thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,329 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-16 06:36:42] 2026-02-16 14:35:38,566 | INFO     | [data] copytool_in thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,567 | INFO     | [job] create_data_payload thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,575 | INFO     | [payload] execute_payloads thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,575 | INFO     | [job] validate thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:38,799 | INFO     | [job] queue monitor thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:35:42,338 | INFO     | [data] queue_monitor thread has finished
[2026-02-16 06:36:42] 2026-02-16 14:36:05,824 | INFO     | PID=1092019 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-16 06:36:42] 2026-02-16 14:36:05,824 | INFO     | .. there are 35 such processes running
[2026-02-16 06:36:42] 2026-02-16 14:36:05,825 | INFO     | found 0 job(s) in 20 queues
[2026-02-16 06:36:42] 2026-02-16 14:36:05,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-16 06:36:42] 2026-02-16 14:36:05,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-16 06:36:42] 2026-02-16 14:36:34,914 | INFO     | [monitor] cgroup control has ended
[2026-02-16 06:36:42] 2026-02-16 14:36:35,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140621254604608)>', '<ExcThread(monitor, started 140620576319232)>']
[2026-02-16 06:36:42] 2026-02-16 14:36:36,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-16 06:36:42] 2026-02-16 14:36:36,005 | INFO     | [monitor] control thread has ended
[2026-02-16 06:36:42] 2026-02-16 14:36:40,217 | INFO     | all workflow threads have been joined
[2026-02-16 06:36:42] 2026-02-16 14:36:40,217 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-16 06:36:42] 2026-02-16 14:36:40,218 | INFO     | traces error code: 0
[2026-02-16 06:36:42] 2026-02-16 14:36:40,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-16 06:36:42] 2026-02-16 14:36:40,768 [wrapper] ==== pilot stdout END ====
[2026-02-16 06:36:42] 2026-02-16 14:36:40,789 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-16 06:36:42] 2026-02-16 14:36:40,871 [wrapper] pilotpid: 1092019
[2026-02-16 06:36:42] 2026-02-16 14:36:40,887 [wrapper] Pilot exit status: 0
[2026-02-16 06:36:42] 2026-02-16 14:36:40,984 [wrapper] pandaids: 7013074314
[2026-02-16 06:36:42] 2026-02-16 14:36:41,346 [wrapper] cleanup supervisor_pilot 1092025 1092020
[2026-02-16 06:36:42] 2026-02-16 14:36:41,358 [wrapper] Test setup, not cleaning
[2026-02-16 06:36:42] 2026-02-16 14:36:41,372 [wrapper] apfmon messages muted
[2026-02-16 06:36:42] 2026-02-16 14:36:41,380 [wrapper] ==== wrapper stdout END ====
[2026-02-16 06:36:42] 2026-02-16 14:36:41,391 [wrapper] ==== wrapper stderr END ====
[2026-02-16 06:36:42]  *** Error codes and diagnostics ***
[2026-02-16 06:36:42]     "exeErrorCode": 65,
[2026-02-16 06:36:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-02-16 06:36:42]     "pilotErrorCode": 1305,
[2026-02-16 06:36:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-02-16 06:36:42]  *** Listing of results directory ***
[2026-02-16 06:36:42] total 674760
[2026-02-16 06:36:42] -rwx------. 1 boinc boinc     36322 Feb 15 21:51 runpilot2-wrapper.sh
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc    584627 Feb 15 21:55 pilot3.tar.gz
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc      5111 Feb 15 21:56 queuedata.json
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc       100 Feb 16 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-16 06:36:42] -rwxr-xr-x. 1 boinc boinc      7986 Feb 16 06:28 run_atlas
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc       105 Feb 16 06:28 job.xml
[2026-02-16 06:36:42] -rw-r--r--. 2 boinc boinc 686789778 Feb 16 06:29 EVNT.48508760._000184.pool.root.1
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc      6594 Feb 16 06:29 init_data.xml
[2026-02-16 06:36:42] -rw-r--r--. 2 boinc boinc     15845 Feb 16 06:29 start_atlas.sh
[2026-02-16 06:36:42] drwxrwx--x. 2 boinc boinc      4096 Feb 16 06:29 shared
[2026-02-16 06:36:42] -rw-r--r--. 2 boinc boinc    597953 Feb 16 06:29 input.tar.gz
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc         0 Feb 16 06:29 boinc_lockfile
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc      2549 Feb 16 06:29 pandaJob.out
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc   1001137 Feb 16 06:29 agis_schedconf.cvmfs.json
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc   1513015 Feb 16 06:29 agis_ddmendpoints.agis.ALL.json
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc       444 Feb 16 06:30 workernode_map.json
[2026-02-16 06:36:42] drwx------. 5 boinc boinc      4096 Feb 16 06:30 pilot3
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc       526 Feb 16 06:33 boinc_task_state.xml
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc       986 Feb 16 06:33 memory_monitor_summary.json
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc     22775 Feb 16 06:33 log.48508763._009368.job.log.tgz.1
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc      7047 Feb 16 06:35 heartbeat.json
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc        95 Feb 16 06:36 pilot_heartbeat.json
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc      8192 Feb 16 06:36 boinc_mmap_file
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc        23 Feb 16 06:36 wrapper_checkpoint.txt
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc      4819 Feb 16 06:36 pilotlog.txt
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc     95124 Feb 16 06:36 log.48508763._009368.job.log.1
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc       188 Feb 16 06:36 output.list
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc       620 Feb 16 06:36 runtime_log
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc    133120 Feb 16 06:36 result.tar.gz
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc      8635 Feb 16 06:36 runtime_log.err
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc       643 Feb 16 06:36 DbKMDmXh6B9n9Rq4apOajLDm4fhM0noT9bVooX4SDmhdqKDmbl73sn.diag
[2026-02-16 06:36:42] -rw-r--r--. 1 boinc boinc     21870 Feb 16 06:36 stderr.txt
[2026-02-16 06:36:42] No HITS result produced
[2026-02-16 06:36:42]  *** Contents of shared directory: ***
[2026-02-16 06:36:42] total 671432
[2026-02-16 06:36:42] -rw-r--r--. 2 boinc boinc 686789778 Feb 16 06:29 ATLAS.root_0
[2026-02-16 06:36:42] -rw-r--r--. 2 boinc boinc     15845 Feb 16 06:29 start_atlas.sh
[2026-02-16 06:36:42] -rw-r--r--. 2 boinc boinc    597953 Feb 16 06:29 input.tar.gz
[2026-02-16 06:36:42] -rw-------. 1 boinc boinc    133120 Feb 16 06:36 result.tar.gz
06:36:44 (1087517): run_atlas exited; CPU time 37.632686
06:36:44 (1087517): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN