Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:57:45 (165069): wrapper (7.7.26015): starting
23:57:45 (165069): wrapper: running run_atlas (--nthreads 3)
[2026-02-16 23:57:45] Arguments: --nthreads 3
[2026-02-16 23:57:45] Threads: 3
[2026-02-16 23:57:45] Checking for CVMFS
[2026-02-16 23:57:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 23:57:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 23:57:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 23:57:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 23:57:46] 2.9.2.0 4025606 2847 67948 156299 0 50 20888779 36864000 0 130560 0 933317 99.985 74773 19094 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-16 23:57:46] CVMFS is ok
[2026-02-16 23:57:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-16 23:57:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-16 23:57:46] Further information can be found at the LHC@home message board.
[2026-02-16 23:57:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 23:57:46] Checking for apptainer binary...
[2026-02-16 23:57:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 23:57:46] Running /usr/bin/apptainer --version
[2026-02-16 23:57:46] apptainer version 1.4.1-1.1
[2026-02-16 23:58:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 23:58:06] atlasA221b
[2026-02-16 23:58:06] apptainer works
[2026-02-16 23:58:06] Set ATHENA_PROC_NUMBER=3
[2026-02-16 23:58:06] Set ATHENA_CORE_NUMBER=3
[2026-02-16 23:58:06] Starting ATLAS job with PandaID=7018049204
[2026-02-16 23:58:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-17 02:18:43]  *** The last 200 lines of the pilot log: ***
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | job 7018049204 has completed (purged errors)
[2026-02-17 02:18:43] 2026-02-17 01:17:44,766 | INFO     | overall cleanup function is called
[2026-02-17 02:18:43] 2026-02-17 01:17:45,773 | INFO     | --- collectZombieJob: --- 10, [173556]
[2026-02-17 02:18:43] 2026-02-17 01:17:45,773 | INFO     | zombie collector waiting for pid 173556
[2026-02-17 02:18:43] 2026-02-17 01:17:45,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-17 02:18:43] 2026-02-17 01:17:45,774 | INFO     | collected zombie processes
[2026-02-17 02:18:43] 2026-02-17 01:17:45,774 | INFO     | will attempt to kill all subprocesses of pid=173556
[2026-02-17 02:18:43] 2026-02-17 01:17:45,828 | INFO     | process IDs to be killed: [173556] (in reverse order)
[2026-02-17 02:18:43] 2026-02-17 01:17:45,860 | WARNING  | found no corresponding commands to process id(s)
[2026-02-17 02:18:43] 2026-02-17 01:17:45,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-17 02:18:43] 2026-02-17 01:17:45,861 | INFO     | did not find any defunct processes belonging to 173556
[2026-02-17 02:18:43] 2026-02-17 01:17:45,863 | INFO     | did not find any defunct processes belonging to 173556
[2026-02-17 02:18:43] 2026-02-17 01:17:45,863 | INFO     | ready for new job
[2026-02-17 02:18:43] 2026-02-17 01:17:45,863 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-17 02:18:43] 2026-02-17 01:17:45,863 | INFO     | **************************************
[2026-02-17 02:18:43] 2026-02-17 01:17:45,864 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-17 02:18:43] 2026-02-17 01:17:45,864 | INFO     | **************************************
[2026-02-17 02:18:43] 2026-02-17 01:17:45,864 | INFO     | 
[2026-02-17 02:18:43] 2026-02-17 01:17:45,864 | INFO     | architecture information:
[2026-02-17 02:18:43] 2026-02-17 01:17:45,864 | INFO     | executing command: cat /etc/os-release
[2026-02-17 02:18:43] 2026-02-17 01:17:45,874 | INFO     | cat /etc/os-release:
[2026-02-17 02:18:43] NAME="CentOS Linux"
[2026-02-17 02:18:43] VERSION="7 (Core)"
[2026-02-17 02:18:43] ID="centos"
[2026-02-17 02:18:43] ID_LIKE="rhel fedora"
[2026-02-17 02:18:43] VERSION_ID="7"
[2026-02-17 02:18:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-17 02:18:43] ANSI_COLOR="0;31"
[2026-02-17 02:18:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-17 02:18:43] HOME_URL="https://www.centos.org/"
[2026-02-17 02:18:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-17 02:18:43] 
[2026-02-17 02:18:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-17 02:18:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-17 02:18:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-17 02:18:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-17 02:18:43] 
[2026-02-17 02:18:43] 2026-02-17 01:17:45,874 | INFO     | **************************************
[2026-02-17 02:18:43] 2026-02-17 01:17:46,377 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-17 02:18:43] 2026-02-17 01:17:46,388 | INFO     | sufficient remaining disk space (335715237888 B)
[2026-02-17 02:18:43] 2026-02-17 01:17:46,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-17 02:18:43] 2026-02-17 01:17:46,388 | INFO     | current server update state: UPDATING_FINAL
[2026-02-17 02:18:43] 2026-02-17 01:17:46,388 | INFO     | update_server=False
[2026-02-17 02:18:43] 2026-02-17 01:17:46,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-17 02:18:43] 2026-02-17 01:17:46,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-17 02:18:43] 2026-02-17 01:17:46,388 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-17 02:18:43] 2026-02-17 01:17:46,483 | INFO     | all data control threads have been joined
[2026-02-17 02:18:43] 2026-02-17 01:17:46,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-17 02:18:43] 2026-02-17 01:17:46,484 | INFO     | aborting loop
[2026-02-17 02:18:43] 2026-02-17 01:17:46,801 | INFO     | all job control threads have been joined
[2026-02-17 02:18:43] 2026-02-17 01:17:47,393 | INFO     | [job] queue monitor thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:47,394 | INFO     | [job] retrieve thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:47,446 | INFO     | all payload control threads have been joined
[2026-02-17 02:18:43] 2026-02-17 01:17:47,489 | INFO     | [data] control thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:47,490 | INFO     | [job] job monitor thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:47,807 | INFO     | [job] control thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:47,910 | INFO     | [payload] execute_payloads thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,394 | INFO     | [data] copytool_out thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,439 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,439 | INFO     | [payload] validate_post thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,451 | INFO     | [payload] control thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,659 | INFO     | [job] create_data_payload thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,672 | INFO     | [payload] validate_pre thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,673 | INFO     | [job] validate thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-17 02:18:43] 2026-02-17 01:17:48,759 | INFO     | [payload] failed_post thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:48,790 | INFO     | [data] copytool_in thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:17:52,683 | INFO     | [data] queue_monitor thread has finished
[2026-02-17 02:18:43] 2026-02-17 01:18:15,926 | INFO     | PID=169128 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-17 02:18:43] 2026-02-17 01:18:15,927 | INFO     | found 0 job(s) in 20 queues
[2026-02-17 02:18:43] 2026-02-17 01:18:15,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-17 02:18:43] 2026-02-17 01:18:15,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-17 02:18:43] 2026-02-17 01:18:36,500 | INFO     | [monitor] cgroup control has ended
[2026-02-17 02:18:43] 2026-02-17 01:18:38,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623349761856)>', '<ExcThread(monitor, started 140622707017472)>']
[2026-02-17 02:18:43] 2026-02-17 01:18:39,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-17 02:18:43] 2026-02-17 01:18:39,046 | INFO     | [monitor] control thread has ended
[2026-02-17 02:18:43] 2026-02-17 01:18:43,567 | INFO     | all workflow threads have been joined
[2026-02-17 02:18:43] 2026-02-17 01:18:43,567 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-17 02:18:43] 2026-02-17 01:18:43,567 | INFO     | traces error code: 0
[2026-02-17 02:18:43] 2026-02-17 01:18:43,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-17 02:18:43] 2026-02-17 01:18:43,618 [wrapper] ==== pilot stdout END ====
[2026-02-17 02:18:43] 2026-02-17 01:18:43,622 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-17 02:18:43] 2026-02-17 01:18:43,625 [wrapper] pilotpid: 169128
[2026-02-17 02:18:43] 2026-02-17 01:18:43,628 [wrapper] Pilot exit status: 0
[2026-02-17 02:18:43] 2026-02-17 01:18:43,636 [wrapper] pandaids: 7018049204
[2026-02-17 02:18:43] 2026-02-17 01:18:43,657 [wrapper] cleanup supervisor_pilot  179763 169129
[2026-02-17 02:18:43] 2026-02-17 01:18:43,659 [wrapper] Test setup, not cleaning
[2026-02-17 02:18:43] 2026-02-17 01:18:43,662 [wrapper] apfmon messages muted
[2026-02-17 02:18:43] 2026-02-17 01:18:43,665 [wrapper] ==== wrapper stdout END ====
[2026-02-17 02:18:43] 2026-02-17 01:18:43,667 [wrapper] ==== wrapper stderr END ====
[2026-02-17 02:18:43]  *** Error codes and diagnostics ***
[2026-02-17 02:18:43]     "exeErrorCode": 0,
[2026-02-17 02:18:43]     "exeErrorDiag": "",
[2026-02-17 02:18:43]     "pilotErrorCode": 0,
[2026-02-17 02:18:43]     "pilotErrorDiag": "",
[2026-02-17 02:18:43]  *** Listing of results directory ***
[2026-02-17 02:18:43] total 951188
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc    584627 Feb 16 03:08 pilot3.tar.gz
[2026-02-17 02:18:43] -rwx------ 1 boinc boinc     36322 Feb 16 03:09 runpilot2-wrapper.sh
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc      5111 Feb 16 03:09 queuedata.json
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc       100 Feb 16 23:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-17 02:18:43] -rwxr-xr-x 1 boinc boinc      7986 Feb 16 23:57 run_atlas
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc       105 Feb 16 23:57 job.xml
[2026-02-17 02:18:43] -rw-r--r-- 2 boinc boinc 687674163 Feb 16 23:57 EVNT.48431094._000994.pool.root.1
[2026-02-17 02:18:43] drwxrwx--x 2 boinc boinc      4096 Feb 16 23:57 shared
[2026-02-17 02:18:43] -rw-r--r-- 2 boinc boinc    597963 Feb 16 23:57 input.tar.gz
[2026-02-17 02:18:43] -rw-r--r-- 2 boinc boinc     15845 Feb 16 23:57 start_atlas.sh
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc         0 Feb 16 23:57 boinc_setup_complete
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc      6199 Feb 16 23:57 init_data.xml
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc         0 Feb 16 23:57 boinc_lockfile
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc      2557 Feb 16 23:58 pandaJob.out
[2026-02-17 02:18:43] -rw------- 1 boinc boinc   1001145 Feb 16 23:58 agis_schedconf.cvmfs.json
[2026-02-17 02:18:43] -rw------- 1 boinc boinc   1513015 Feb 16 23:58 agis_ddmendpoints.agis.ALL.json
[2026-02-17 02:18:43] -rw------- 1 boinc boinc       430 Feb 16 23:58 workernode_map.json
[2026-02-17 02:18:43] drwx------ 5 boinc boinc      4096 Feb 16 23:58 pilot3
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc       531 Feb 17 02:17 boinc_task_state.xml
[2026-02-17 02:18:43] -rw------- 1 boinc boinc 279380614 Feb 17 02:17 HITS.48431096._059831.pool.root.1
[2026-02-17 02:18:43] -rw------- 1 boinc boinc      1018 Feb 17 02:17 memory_monitor_summary.json
[2026-02-17 02:18:43] -rw------- 1 boinc boinc    326558 Feb 17 02:17 log.48431096._059831.job.log.tgz.1
[2026-02-17 02:18:43] -rw------- 1 boinc boinc      6314 Feb 17 02:17 heartbeat.json
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc        27 Feb 17 02:18 wrapper_checkpoint.txt
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc      8192 Feb 17 02:18 boinc_mmap_file
[2026-02-17 02:18:43] -rw------- 1 boinc boinc        95 Feb 17 02:18 pilot_heartbeat.json
[2026-02-17 02:18:43] -rw------- 1 boinc boinc      4747 Feb 17 02:18 pilotlog.txt
[2026-02-17 02:18:43] -rw------- 1 boinc boinc   1195408 Feb 17 02:18 log.48431096._059831.job.log.1
[2026-02-17 02:18:43] -rw------- 1 boinc boinc       357 Feb 17 02:18 output.list
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc       620 Feb 17 02:18 runtime_log
[2026-02-17 02:18:43] -rw------- 1 boinc boinc   1536000 Feb 17 02:18 result.tar.gz
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc      8916 Feb 17 02:18 runtime_log.err
[2026-02-17 02:18:43] -rw------- 1 boinc boinc       661 Feb 17 02:18 FcENDm2D3B9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnGrKDmxK6hTm.diag
[2026-02-17 02:18:43] -rw-r--r-- 1 boinc boinc     11407 Feb 17 02:18 stderr.txt
[2026-02-17 02:18:43] HITS file was successfully produced:
[2026-02-17 02:18:43] -rw------- 1 boinc boinc 279380614 Feb 17 02:17 shared/HITS.pool.root.1
[2026-02-17 02:18:43]  *** Contents of shared directory: ***
[2026-02-17 02:18:43] total 946504
[2026-02-17 02:18:43] -rw-r--r-- 2 boinc boinc 687674163 Feb 16 23:57 ATLAS.root_0
[2026-02-17 02:18:43] -rw-r--r-- 2 boinc boinc    597963 Feb 16 23:57 input.tar.gz
[2026-02-17 02:18:43] -rw-r--r-- 2 boinc boinc     15845 Feb 16 23:57 start_atlas.sh
[2026-02-17 02:18:43] -rw------- 1 boinc boinc 279380614 Feb 17 02:17 HITS.pool.root.1
[2026-02-17 02:18:43] -rw------- 1 boinc boinc   1536000 Feb 17 02:18 result.tar.gz
02:18:45 (165069): run_atlas exited; CPU time 24331.341293
02:18:45 (165069): called boinc_finish(0)

</stderr_txt>
]]>

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