Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:50:07 (612495): wrapper (7.7.26015): starting
21:50:07 (612495): wrapper: running run_atlas (--nthreads 4)
[2026-02-16 21:50:07] Arguments: --nthreads 4
[2026-02-16 21:50:07] Threads: 4
[2026-02-16 21:50:07] Checking for CVMFS
[2026-02-16 21:50:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 21:50:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 21:50:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 21:50:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 21:50:08] 2.9.2.0 150577 2796 95520 156296 0 49 19303125 36864001 0 130560 0 1241312 99.989 72255 11346 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-16 21:50:08] CVMFS is ok
[2026-02-16 21:50:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-16 21:50:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-16 21:50:08] Further information can be found at the LHC@home message board.
[2026-02-16 21:50:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 21:50:08] Checking for apptainer binary...
[2026-02-16 21:50:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 21:50:08] Running /usr/bin/apptainer --version
[2026-02-16 21:50:08] apptainer version 1.4.1-1.1
[2026-02-16 21:50:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 21:50:08] thA319
[2026-02-16 21:50:08] apptainer works
[2026-02-16 21:50:08] Set ATHENA_PROC_NUMBER=4
[2026-02-16 21:50:08] Set ATHENA_CORE_NUMBER=4
[2026-02-16 21:50:08] Starting ATLAS job with PandaID=7017587472
[2026-02-16 21:50:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-16 23:36:39]  *** The last 200 lines of the pilot log: ***
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | job 7017587472 has completed (purged errors)
[2026-02-16 23:36:39] 2026-02-16 22:36:07,835 | INFO     | overall cleanup function is called
[2026-02-16 23:36:39] 2026-02-16 22:36:08,842 | INFO     | --- collectZombieJob: --- 10, [621117]
[2026-02-16 23:36:39] 2026-02-16 22:36:08,842 | INFO     | zombie collector waiting for pid 621117
[2026-02-16 23:36:39] 2026-02-16 22:36:08,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-16 23:36:39] 2026-02-16 22:36:08,842 | INFO     | collected zombie processes
[2026-02-16 23:36:39] 2026-02-16 22:36:08,842 | INFO     | will attempt to kill all subprocesses of pid=621117
[2026-02-16 23:36:39] 2026-02-16 22:36:08,892 | INFO     | process IDs to be killed: [621117] (in reverse order)
[2026-02-16 23:36:39] 2026-02-16 22:36:08,926 | WARNING  | found no corresponding commands to process id(s)
[2026-02-16 23:36:39] 2026-02-16 22:36:08,927 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-16 23:36:39] 2026-02-16 22:36:08,929 | INFO     | did not find any defunct processes belonging to 621117
[2026-02-16 23:36:39] 2026-02-16 22:36:08,930 | INFO     | did not find any defunct processes belonging to 621117
[2026-02-16 23:36:39] 2026-02-16 22:36:08,930 | INFO     | ready for new job
[2026-02-16 23:36:39] 2026-02-16 22:36:08,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-16 23:36:39] 2026-02-16 22:36:08,931 | INFO     | **************************************
[2026-02-16 23:36:39] 2026-02-16 22:36:08,931 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-16 23:36:39] 2026-02-16 22:36:08,931 | INFO     | **************************************
[2026-02-16 23:36:39] 2026-02-16 22:36:08,931 | INFO     | 
[2026-02-16 23:36:39] 2026-02-16 22:36:08,931 | INFO     | architecture information:
[2026-02-16 23:36:39] 2026-02-16 22:36:08,932 | INFO     | executing command: cat /etc/os-release
[2026-02-16 23:36:39] 2026-02-16 22:36:08,945 | INFO     | cat /etc/os-release:
[2026-02-16 23:36:39] NAME="CentOS Linux"
[2026-02-16 23:36:39] VERSION="7 (Core)"
[2026-02-16 23:36:39] ID="centos"
[2026-02-16 23:36:39] ID_LIKE="rhel fedora"
[2026-02-16 23:36:39] VERSION_ID="7"
[2026-02-16 23:36:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-16 23:36:39] ANSI_COLOR="0;31"
[2026-02-16 23:36:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-16 23:36:39] HOME_URL="https://www.centos.org/"
[2026-02-16 23:36:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-16 23:36:39] 
[2026-02-16 23:36:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-16 23:36:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-16 23:36:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-16 23:36:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-16 23:36:39] 
[2026-02-16 23:36:39] 2026-02-16 22:36:08,946 | INFO     | **************************************
[2026-02-16 23:36:39] 2026-02-16 22:36:09,449 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-16 23:36:39] 2026-02-16 22:36:09,466 | INFO     | sufficient remaining disk space (332379717632 B)
[2026-02-16 23:36:39] 2026-02-16 22:36:09,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-16 23:36:39] 2026-02-16 22:36:09,467 | INFO     | current server update state: UPDATING_FINAL
[2026-02-16 23:36:39] 2026-02-16 22:36:09,467 | INFO     | update_server=False
[2026-02-16 23:36:39] 2026-02-16 22:36:09,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-16 23:36:39] 2026-02-16 22:36:09,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-16 23:36:39] 2026-02-16 22:36:09,487 | INFO     | all job control threads have been joined
[2026-02-16 23:36:39] 2026-02-16 22:36:09,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-16 23:36:39] 2026-02-16 22:36:09,509 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-16 23:36:39] 2026-02-16 22:36:09,510 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-16 23:36:39] 2026-02-16 22:36:09,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-16 23:36:39] 2026-02-16 22:36:09,510 | INFO     | will abort loop
[2026-02-16 23:36:39] 2026-02-16 22:36:09,529 | INFO     | all data control threads have been joined
[2026-02-16 23:36:39] 2026-02-16 22:36:09,532 | INFO     | all payload control threads have been joined
[2026-02-16 23:36:39] 2026-02-16 22:36:10,473 | INFO     | [job] retrieve thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,492 | INFO     | [job] control thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,496 | INFO     | [job] create_data_payload thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,515 | INFO     | [job] job monitor thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,535 | INFO     | [data] control thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,538 | INFO     | [payload] control thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,576 | INFO     | [payload] validate_pre thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,733 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,780 | INFO     | [data] copytool_in thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:10,947 | INFO     | [payload] execute_payloads thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:11,408 | INFO     | [payload] failed_post thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:11,502 | INFO     | [data] copytool_out thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:11,911 | INFO     | [payload] validate_post thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:11,926 | INFO     | [job] validate thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:12,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-16 23:36:39] 2026-02-16 22:36:13,382 | INFO     | [job] queue monitor thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:13,474 | INFO     | [data] queue_monitor thread has finished
[2026-02-16 23:36:39] 2026-02-16 22:36:28,051 | INFO     | [monitor] cgroup control has ended
[2026-02-16 23:36:39] 2026-02-16 22:36:28,668 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589590787904)>', '<ExcThread(monitor, started 140588934473472)>']
[2026-02-16 23:36:39] 2026-02-16 22:36:33,685 | INFO     | all workflow threads have been joined
[2026-02-16 23:36:39] 2026-02-16 22:36:33,686 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-16 23:36:39] 2026-02-16 22:36:33,686 | INFO     | traces error code: 0
[2026-02-16 23:36:39] 2026-02-16 22:36:33,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-16 23:36:39] 2026-02-16 22:36:39,650 | INFO     | PID=616607 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-16 23:36:39] 2026-02-16 22:36:39,650 | INFO     | found 0 job(s) in 20 queues
[2026-02-16 23:36:39] 2026-02-16 22:36:39,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-16 23:36:39] 2026-02-16 22:36:39,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-16 23:36:39] 2026-02-16 22:36:39,650 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-16 23:36:39] 2026-02-16 22:36:39,650 | INFO     | [monitor] control thread has ended
[2026-02-16 23:36:39] 2026-02-16 22:36:39,717 [wrapper] ==== pilot stdout END ====
[2026-02-16 23:36:39] 2026-02-16 22:36:39,720 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-16 23:36:39] 2026-02-16 22:36:39,724 [wrapper] pilotpid: 616607
[2026-02-16 23:36:39] 2026-02-16 22:36:39,728 [wrapper] Pilot exit status: 0
[2026-02-16 23:36:39] 2026-02-16 22:36:39,738 [wrapper] pandaids: 7017587472
[2026-02-16 23:36:39] 2026-02-16 22:36:39,761 [wrapper] cleanup supervisor_pilot  627319 616608
[2026-02-16 23:36:39] 2026-02-16 22:36:39,764 [wrapper] Test setup, not cleaning
[2026-02-16 23:36:39] 2026-02-16 22:36:39,768 [wrapper] apfmon messages muted
[2026-02-16 23:36:39] 2026-02-16 22:36:39,772 [wrapper] ==== wrapper stdout END ====
[2026-02-16 23:36:39] 2026-02-16 22:36:39,776 [wrapper] ==== wrapper stderr END ====
[2026-02-16 23:36:39]  *** Error codes and diagnostics ***
[2026-02-16 23:36:39]     "exeErrorCode": 0,
[2026-02-16 23:36:39]     "exeErrorDiag": "",
[2026-02-16 23:36:39]     "pilotErrorCode": 0,
[2026-02-16 23:36:39]     "pilotErrorDiag": "",
[2026-02-16 23:36:39]  *** Listing of results directory ***
[2026-02-16 23:36:39] total 945356
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc    584627 Feb 15 11:33 pilot3.tar.gz
[2026-02-16 23:36:39] -rwx------ 1 boinc boinc     36322 Feb 15 11:33 runpilot2-wrapper.sh
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc      5111 Feb 15 11:33 queuedata.json
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc       100 Feb 16 21:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-16 23:36:39] -rwxr-xr-x 1 boinc boinc      7986 Feb 16 21:50 run_atlas
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc       105 Feb 16 21:50 job.xml
[2026-02-16 23:36:39] -rw-r--r-- 2 boinc boinc 681035083 Feb 16 21:50 EVNT.48431094._000678.pool.root.1
[2026-02-16 23:36:39] -rw-r--r-- 2 boinc boinc    597971 Feb 16 21:50 input.tar.gz
[2026-02-16 23:36:39] -rw-r--r-- 2 boinc boinc     15845 Feb 16 21:50 start_atlas.sh
[2026-02-16 23:36:39] drwxrwx--x 2 boinc boinc      4096 Feb 16 21:50 shared
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc         0 Feb 16 21:50 boinc_setup_complete
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc      6369 Feb 16 21:50 init_data.xml
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc         0 Feb 16 21:50 boinc_lockfile
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc      2558 Feb 16 21:50 pandaJob.out
[2026-02-16 23:36:39] -rw------- 1 boinc boinc   1001137 Feb 16 21:50 agis_schedconf.cvmfs.json
[2026-02-16 23:36:39] -rw------- 1 boinc boinc   1513015 Feb 16 21:50 agis_ddmendpoints.agis.ALL.json
[2026-02-16 23:36:39] -rw------- 1 boinc boinc       419 Feb 16 21:50 workernode_map.json
[2026-02-16 23:36:39] drwx------ 5 boinc boinc      4096 Feb 16 21:50 pilot3
[2026-02-16 23:36:39] -rw------- 1 boinc boinc 280603787 Feb 16 23:35 HITS.48431096._049637.pool.root.1
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc       530 Feb 16 23:35 boinc_task_state.xml
[2026-02-16 23:36:39] -rw------- 1 boinc boinc        95 Feb 16 23:35 pilot_heartbeat.json
[2026-02-16 23:36:39] -rw------- 1 boinc boinc      1020 Feb 16 23:35 memory_monitor_summary.json
[2026-02-16 23:36:39] -rw------- 1 boinc boinc    328162 Feb 16 23:36 log.48431096._049637.job.log.tgz.1
[2026-02-16 23:36:39] -rw------- 1 boinc boinc      6306 Feb 16 23:36 heartbeat.json
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc        27 Feb 16 23:36 wrapper_checkpoint.txt
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc      8192 Feb 16 23:36 boinc_mmap_file
[2026-02-16 23:36:39] -rw------- 1 boinc boinc       746 Feb 16 23:36 pilotlog.txt
[2026-02-16 23:36:39] -rw------- 1 boinc boinc    916624 Feb 16 23:36 log.48431096._049637.job.log.1
[2026-02-16 23:36:39] -rw------- 1 boinc boinc       357 Feb 16 23:36 output.list
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc       620 Feb 16 23:36 runtime_log
[2026-02-16 23:36:39] -rw------- 1 boinc boinc   1259520 Feb 16 23:36 result.tar.gz
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc      8896 Feb 16 23:36 runtime_log.err
[2026-02-16 23:36:39] -rw------- 1 boinc boinc       657 Feb 16 23:36 TpTMDmOcoB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpmpKDm3S60Mn.diag
[2026-02-16 23:36:39] -rw-r--r-- 1 boinc boinc     11835 Feb 16 23:36 stderr.txt
[2026-02-16 23:36:39] HITS file was successfully produced:
[2026-02-16 23:36:39] -rw------- 1 boinc boinc 280603787 Feb 16 23:35 shared/HITS.pool.root.1
[2026-02-16 23:36:39]  *** Contents of shared directory: ***
[2026-02-16 23:36:39] total 940944
[2026-02-16 23:36:39] -rw-r--r-- 2 boinc boinc 681035083 Feb 16 21:50 ATLAS.root_0
[2026-02-16 23:36:39] -rw-r--r-- 2 boinc boinc    597971 Feb 16 21:50 input.tar.gz
[2026-02-16 23:36:39] -rw-r--r-- 2 boinc boinc     15845 Feb 16 21:50 start_atlas.sh
[2026-02-16 23:36:39] -rw------- 1 boinc boinc 280603787 Feb 16 23:35 HITS.pool.root.1
[2026-02-16 23:36:39] -rw------- 1 boinc boinc   1259520 Feb 16 23:36 result.tar.gz
23:36:40 (612495): run_atlas exited; CPU time 24128.851774
23:36:40 (612495): called boinc_finish(0)

</stderr_txt>
]]>

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