Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:48:14 (121233): wrapper (7.7.26015): starting
16:48:14 (121233): wrapper: running run_atlas (--nthreads 3)
[2026-02-16 16:48:14] Arguments: --nthreads 3
[2026-02-16 16:48:14] Threads: 3
[2026-02-16 16:48:14] Checking for CVMFS
[2026-02-16 16:48:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 16:48:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 16:48:15] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 16:48:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 16:48:15] 2.9.2.0 4025606 2418 67348 156288 0 50 20834036 36864000 0 130560 0 810638 99.986 58652 17450 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-16 16:48:15] CVMFS is ok
[2026-02-16 16:48:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-16 16:48:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-16 16:48:15] Further information can be found at the LHC@home message board.
[2026-02-16 16:48:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 16:48:15] Checking for apptainer binary...
[2026-02-16 16:48:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 16:48:15] Running /usr/bin/apptainer --version
[2026-02-16 16:48:15] apptainer version 1.4.1-1.1
[2026-02-16 16:48:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 16:48:15] atlasA221b
[2026-02-16 16:48:15] apptainer works
[2026-02-16 16:48:15] Set ATHENA_PROC_NUMBER=3
[2026-02-16 16:48:15] Set ATHENA_CORE_NUMBER=3
[2026-02-16 16:48:15] Starting ATLAS job with PandaID=7017882937
[2026-02-16 16:48:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-16 19:11:46]  *** The last 200 lines of the pilot log: ***
[2026-02-16 19:11:46] 2026-02-16 18:11:18,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-16 19:11:46] 2026-02-16 18:11:18,021 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-16 19:11:46] 2026-02-16 18:11:18,021 | INFO     | job 7017882937 has completed (purged errors)
[2026-02-16 19:11:46] 2026-02-16 18:11:18,021 | INFO     | overall cleanup function is called
[2026-02-16 19:11:46] 2026-02-16 18:11:19,024 | INFO     | --- collectZombieJob: --- 10, [129703]
[2026-02-16 19:11:46] 2026-02-16 18:11:19,024 | INFO     | zombie collector waiting for pid 129703
[2026-02-16 19:11:46] 2026-02-16 18:11:19,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-16 19:11:46] 2026-02-16 18:11:19,025 | INFO     | collected zombie processes
[2026-02-16 19:11:46] 2026-02-16 18:11:19,025 | INFO     | will attempt to kill all subprocesses of pid=129703
[2026-02-16 19:11:46] 2026-02-16 18:11:19,079 | INFO     | process IDs to be killed: [129703] (in reverse order)
[2026-02-16 19:11:46] 2026-02-16 18:11:19,111 | WARNING  | found no corresponding commands to process id(s)
[2026-02-16 19:11:46] 2026-02-16 18:11:19,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-16 19:11:46] 2026-02-16 18:11:19,112 | INFO     | did not find any defunct processes belonging to 129703
[2026-02-16 19:11:46] 2026-02-16 18:11:19,114 | INFO     | did not find any defunct processes belonging to 129703
[2026-02-16 19:11:46] 2026-02-16 18:11:19,114 | INFO     | ready for new job
[2026-02-16 19:11:46] 2026-02-16 18:11:19,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-16 19:11:46] 2026-02-16 18:11:19,115 | INFO     | **************************************
[2026-02-16 19:11:46] 2026-02-16 18:11:19,115 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-16 19:11:46] 2026-02-16 18:11:19,115 | INFO     | **************************************
[2026-02-16 19:11:46] 2026-02-16 18:11:19,115 | INFO     | 
[2026-02-16 19:11:46] 2026-02-16 18:11:19,115 | INFO     | architecture information:
[2026-02-16 19:11:46] 2026-02-16 18:11:19,115 | INFO     | executing command: cat /etc/os-release
[2026-02-16 19:11:46] 2026-02-16 18:11:19,126 | INFO     | cat /etc/os-release:
[2026-02-16 19:11:46] NAME="CentOS Linux"
[2026-02-16 19:11:46] VERSION="7 (Core)"
[2026-02-16 19:11:46] ID="centos"
[2026-02-16 19:11:46] ID_LIKE="rhel fedora"
[2026-02-16 19:11:46] VERSION_ID="7"
[2026-02-16 19:11:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-16 19:11:46] ANSI_COLOR="0;31"
[2026-02-16 19:11:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-16 19:11:46] HOME_URL="https://www.centos.org/"
[2026-02-16 19:11:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-16 19:11:46] 
[2026-02-16 19:11:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-16 19:11:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-16 19:11:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-16 19:11:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-16 19:11:46] 
[2026-02-16 19:11:46] 2026-02-16 18:11:19,126 | INFO     | **************************************
[2026-02-16 19:11:46] 2026-02-16 18:11:19,628 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-16 19:11:46] 2026-02-16 18:11:19,642 | INFO     | sufficient remaining disk space (335616671744 B)
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | INFO     | current server update state: UPDATING_FINAL
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | INFO     | update_server=False
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | INFO     | found 0 job(s) in 20 queues
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-16 19:11:46] 2026-02-16 18:11:19,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-16 19:11:46] 2026-02-16 18:11:19,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-16 19:11:46] 2026-02-16 18:11:20,125 | INFO     | job.realtimelogging is not enabled
[2026-02-16 19:11:46] 2026-02-16 18:11:20,311 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-16 19:11:46] 2026-02-16 18:11:20,311 | INFO     | aborting loop
[2026-02-16 19:11:46] 2026-02-16 18:11:20,432 | INFO     | all job control threads have been joined
[2026-02-16 19:11:46] 2026-02-16 18:11:20,448 | INFO     | all payload control threads have been joined
[2026-02-16 19:11:46] 2026-02-16 18:11:20,648 | INFO     | [job] retrieve thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:20,649 | INFO     | [job] queue monitor thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:20,733 | INFO     | all data control threads have been joined
[2026-02-16 19:11:46] 2026-02-16 18:11:20,781 | INFO     | [payload] failed_post thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,131 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,191 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-16 19:11:46] 2026-02-16 18:11:21,317 | INFO     | [job] job monitor thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,334 | INFO     | [payload] validate_post thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,382 | INFO     | [job] validate thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,430 | INFO     | [job] create_data_payload thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,437 | INFO     | [job] control thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,439 | INFO     | [payload] validate_pre thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,450 | INFO     | [payload] control thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,739 | INFO     | [data] control thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,802 | INFO     | [data] copytool_out thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,844 | INFO     | [data] copytool_in thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:21,914 | INFO     | [payload] execute_payloads thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:25,198 | INFO     | [data] queue_monitor thread has finished
[2026-02-16 19:11:46] 2026-02-16 18:11:40,851 | INFO     | [monitor] cgroup control has ended
[2026-02-16 19:11:46] 2026-02-16 18:11:41,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140240854177600)>', '<ExcThread(monitor, started 140240119383808)>']
[2026-02-16 19:11:46] 2026-02-16 18:11:41,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-16 19:11:46] 2026-02-16 18:11:41,762 | INFO     | [monitor] control thread has ended
[2026-02-16 19:11:46] 2026-02-16 18:11:46,459 | INFO     | all workflow threads have been joined
[2026-02-16 19:11:46] 2026-02-16 18:11:46,459 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-16 19:11:46] 2026-02-16 18:11:46,460 | INFO     | traces error code: 0
[2026-02-16 19:11:46] 2026-02-16 18:11:46,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-16 19:11:46] 2026-02-16 18:11:46,545 [wrapper] ==== pilot stdout END ====
[2026-02-16 19:11:46] 2026-02-16 18:11:46,548 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-16 19:11:46] 2026-02-16 18:11:46,551 [wrapper] pilotpid: 125275
[2026-02-16 19:11:46] 2026-02-16 18:11:46,555 [wrapper] Pilot exit status: 0
[2026-02-16 19:11:46] 2026-02-16 18:11:46,563 [wrapper] pandaids: 7017882937
[2026-02-16 19:11:46] 2026-02-16 18:11:46,581 [wrapper] cleanup supervisor_pilot  135607 125276
[2026-02-16 19:11:46] 2026-02-16 18:11:46,583 [wrapper] Test setup, not cleaning
[2026-02-16 19:11:46] 2026-02-16 18:11:46,586 [wrapper] apfmon messages muted
[2026-02-16 19:11:46] 2026-02-16 18:11:46,589 [wrapper] ==== wrapper stdout END ====
[2026-02-16 19:11:46] 2026-02-16 18:11:46,591 [wrapper] ==== wrapper stderr END ====
[2026-02-16 19:11:46]  *** Error codes and diagnostics ***
[2026-02-16 19:11:46]     "exeErrorCode": 0,
[2026-02-16 19:11:46]     "exeErrorDiag": "",
[2026-02-16 19:11:46]     "pilotErrorCode": 0,
[2026-02-16 19:11:46]     "pilotErrorDiag": "",
[2026-02-16 19:11:46]  *** Listing of results directory ***
[2026-02-16 19:11:46] total 940400
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc    584627 Feb 15 21:13 pilot3.tar.gz
[2026-02-16 19:11:46] -rwx------ 1 boinc boinc     36322 Feb 15 21:13 runpilot2-wrapper.sh
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc      5111 Feb 15 21:13 queuedata.json
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc       100 Feb 16 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-16 19:11:46] -rwxr-xr-x 1 boinc boinc      7986 Feb 16 16:48 run_atlas
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc       105 Feb 16 16:48 job.xml
[2026-02-16 19:11:46] -rw-r--r-- 2 boinc boinc 674721637 Feb 16 16:48 EVNT.48431094._000921.pool.root.1
[2026-02-16 19:11:46] drwxrwx--x 2 boinc boinc      4096 Feb 16 16:48 shared
[2026-02-16 19:11:46] -rw-r--r-- 2 boinc boinc    597964 Feb 16 16:48 input.tar.gz
[2026-02-16 19:11:46] -rw-r--r-- 2 boinc boinc     15845 Feb 16 16:48 start_atlas.sh
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc         0 Feb 16 16:48 boinc_setup_complete
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc      6199 Feb 16 16:48 init_data.xml
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc         0 Feb 16 16:48 boinc_lockfile
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc      2556 Feb 16 16:48 pandaJob.out
[2026-02-16 19:11:46] -rw------- 1 boinc boinc   1001145 Feb 16 16:48 agis_schedconf.cvmfs.json
[2026-02-16 19:11:46] -rw------- 1 boinc boinc   1513015 Feb 16 16:48 agis_ddmendpoints.agis.ALL.json
[2026-02-16 19:11:46] -rw------- 1 boinc boinc       431 Feb 16 16:48 workernode_map.json
[2026-02-16 19:11:46] drwx------ 5 boinc boinc      4096 Feb 16 16:48 pilot3
[2026-02-16 19:11:46] -rw------- 1 boinc boinc 281265792 Feb 16 19:10 HITS.48431096._056140.pool.root.1
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc       530 Feb 16 19:10 boinc_task_state.xml
[2026-02-16 19:11:46] -rw------- 1 boinc boinc      1018 Feb 16 19:11 memory_monitor_summary.json
[2026-02-16 19:11:46] -rw------- 1 boinc boinc    313366 Feb 16 19:11 log.48431096._056140.job.log.tgz.1
[2026-02-16 19:11:46] -rw------- 1 boinc boinc        95 Feb 16 19:11 pilot_heartbeat.json
[2026-02-16 19:11:46] -rw------- 1 boinc boinc      6323 Feb 16 19:11 heartbeat.json
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc      8192 Feb 16 19:11 boinc_mmap_file
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc        27 Feb 16 19:11 wrapper_checkpoint.txt
[2026-02-16 19:11:46] -rw------- 1 boinc boinc      4624 Feb 16 19:11 pilotlog.txt
[2026-02-16 19:11:46] -rw------- 1 boinc boinc   1220037 Feb 16 19:11 log.48431096._056140.job.log.1
[2026-02-16 19:11:46] -rw------- 1 boinc boinc       357 Feb 16 19:11 output.list
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc       620 Feb 16 19:11 runtime_log
[2026-02-16 19:11:46] -rw------- 1 boinc boinc   1546240 Feb 16 19:11 result.tar.gz
[2026-02-16 19:11:46] -rw------- 1 boinc boinc       661 Feb 16 19:11 tQ2NDmWfxB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBipKDm03crnn.diag
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc      8916 Feb 16 19:11 runtime_log.err
[2026-02-16 19:11:46] -rw-r--r-- 1 boinc boinc     11021 Feb 16 19:11 stderr.txt
[2026-02-16 19:11:46] HITS file was successfully produced:
[2026-02-16 19:11:46] -rw------- 1 boinc boinc 281265792 Feb 16 19:10 shared/HITS.pool.root.1
[2026-02-16 19:11:46]  *** Contents of shared directory: ***
[2026-02-16 19:11:46] total 935704
[2026-02-16 19:11:46] -rw-r--r-- 2 boinc boinc 674721637 Feb 16 16:48 ATLAS.root_0
[2026-02-16 19:11:46] -rw-r--r-- 2 boinc boinc    597964 Feb 16 16:48 input.tar.gz
[2026-02-16 19:11:46] -rw-r--r-- 2 boinc boinc     15845 Feb 16 16:48 start_atlas.sh
[2026-02-16 19:11:46] -rw------- 1 boinc boinc 281265792 Feb 16 19:10 HITS.pool.root.1
[2026-02-16 19:11:46] -rw------- 1 boinc boinc   1546240 Feb 16 19:11 result.tar.gz
19:11:47 (121233): run_atlas exited; CPU time 24877.035670
19:11:47 (121233): called boinc_finish(0)

</stderr_txt>
]]>

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