Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:17:37 (61582): wrapper (7.7.26015): starting
07:17:37 (61582): wrapper: running run_atlas (--nthreads 3)
[2026-02-16 07:17:37] Arguments: --nthreads 3
[2026-02-16 07:17:37] Threads: 3
[2026-02-16 07:17:37] Checking for CVMFS
[2026-02-16 07:17:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 07:17:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 07:17:38] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 07:17:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 07:17:38] 2.9.2.0 4025606 1847 63444 156273 2 49 20752831 36864001 0 130560 0 647092 99.989 36467 17365 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-16 07:17:38] CVMFS is ok
[2026-02-16 07:17:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-16 07:17:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-16 07:17:38] Further information can be found at the LHC@home message board.
[2026-02-16 07:17:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 07:17:38] Checking for apptainer binary...
[2026-02-16 07:17:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 07:17:38] Running /usr/bin/apptainer --version
[2026-02-16 07:17:38] apptainer version 1.4.1-1.1
[2026-02-16 07:17:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 07:17:38] atlasA221b
[2026-02-16 07:17:38] apptainer works
[2026-02-16 07:17:38] Set ATHENA_PROC_NUMBER=3
[2026-02-16 07:17:38] Set ATHENA_CORE_NUMBER=3
[2026-02-16 07:17:38] Starting ATLAS job with PandaID=7017659012
[2026-02-16 07:17:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-16 09:42:11]  *** The last 200 lines of the pilot log: ***
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,131 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-16 09:42:11] 2026-02-16 08:41:36,132 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,132 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-16 09:42:11] 2026-02-16 08:41:36,132 | INFO     | job 7017659012 has completed (purged errors)
[2026-02-16 09:42:11] 2026-02-16 08:41:36,132 | INFO     | overall cleanup function is called
[2026-02-16 09:42:11] 2026-02-16 08:41:37,138 | INFO     | --- collectZombieJob: --- 10, [70062]
[2026-02-16 09:42:11] 2026-02-16 08:41:37,138 | INFO     | zombie collector waiting for pid 70062
[2026-02-16 09:42:11] 2026-02-16 08:41:37,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-16 09:42:11] 2026-02-16 08:41:37,139 | INFO     | collected zombie processes
[2026-02-16 09:42:11] 2026-02-16 08:41:37,139 | INFO     | will attempt to kill all subprocesses of pid=70062
[2026-02-16 09:42:11] 2026-02-16 08:41:37,192 | INFO     | process IDs to be killed: [70062] (in reverse order)
[2026-02-16 09:42:11] 2026-02-16 08:41:37,222 | WARNING  | found no corresponding commands to process id(s)
[2026-02-16 09:42:11] 2026-02-16 08:41:37,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-16 09:42:11] 2026-02-16 08:41:37,224 | INFO     | did not find any defunct processes belonging to 70062
[2026-02-16 09:42:11] 2026-02-16 08:41:37,225 | INFO     | did not find any defunct processes belonging to 70062
[2026-02-16 09:42:11] 2026-02-16 08:41:37,225 | INFO     | ready for new job
[2026-02-16 09:42:11] 2026-02-16 08:41:37,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-16 09:42:11] 2026-02-16 08:41:37,226 | INFO     | **************************************
[2026-02-16 09:42:11] 2026-02-16 08:41:37,226 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-16 09:42:11] 2026-02-16 08:41:37,226 | INFO     | **************************************
[2026-02-16 09:42:11] 2026-02-16 08:41:37,226 | INFO     | 
[2026-02-16 09:42:11] 2026-02-16 08:41:37,226 | INFO     | architecture information:
[2026-02-16 09:42:11] 2026-02-16 08:41:37,226 | INFO     | executing command: cat /etc/os-release
[2026-02-16 09:42:11] 2026-02-16 08:41:37,236 | INFO     | cat /etc/os-release:
[2026-02-16 09:42:11] NAME="CentOS Linux"
[2026-02-16 09:42:11] VERSION="7 (Core)"
[2026-02-16 09:42:11] ID="centos"
[2026-02-16 09:42:11] ID_LIKE="rhel fedora"
[2026-02-16 09:42:11] VERSION_ID="7"
[2026-02-16 09:42:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-16 09:42:11] ANSI_COLOR="0;31"
[2026-02-16 09:42:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-16 09:42:11] HOME_URL="https://www.centos.org/"
[2026-02-16 09:42:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-16 09:42:11] 
[2026-02-16 09:42:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-16 09:42:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-16 09:42:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-16 09:42:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-16 09:42:11] 
[2026-02-16 09:42:11] 2026-02-16 08:41:37,236 | INFO     | **************************************
[2026-02-16 09:42:11] 2026-02-16 08:41:37,740 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-16 09:42:11] 2026-02-16 08:41:37,753 | INFO     | sufficient remaining disk space (335276933120 B)
[2026-02-16 09:42:11] 2026-02-16 08:41:37,753 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-16 09:42:11] 2026-02-16 08:41:37,753 | INFO     | current server update state: UPDATING_FINAL
[2026-02-16 09:42:11] 2026-02-16 08:41:37,753 | INFO     | update_server=False
[2026-02-16 09:42:11] 2026-02-16 08:41:37,754 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-16 09:42:11] 2026-02-16 08:41:37,754 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-16 09:42:11] 2026-02-16 08:41:37,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-16 09:42:11] 2026-02-16 08:41:37,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-16 09:42:11] 2026-02-16 08:41:37,898 | INFO     | aborting loop
[2026-02-16 09:42:11] 2026-02-16 08:41:37,994 | INFO     | all data control threads have been joined
[2026-02-16 09:42:11] 2026-02-16 08:41:38,442 | INFO     | all job control threads have been joined
[2026-02-16 09:42:11] 2026-02-16 08:41:38,679 | INFO     | all payload control threads have been joined
[2026-02-16 09:42:11] 2026-02-16 08:41:38,759 | INFO     | [job] retrieve thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:38,760 | INFO     | [job] queue monitor thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:38,904 | INFO     | [job] job monitor thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:38,993 | INFO     | [payload] validate_post thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:38,999 | INFO     | [data] control thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,152 | INFO     | [payload] failed_post thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,155 | INFO     | [job] create_data_payload thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,238 | INFO     | [job] validate thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,319 | INFO     | [payload] validate_pre thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,448 | INFO     | [job] control thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,685 | INFO     | [payload] control thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,712 | INFO     | [data] copytool_in thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:39,755 | INFO     | [data] copytool_out thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:40,067 | INFO     | [payload] execute_payloads thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:40,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-16 09:42:11] 2026-02-16 08:41:44,486 | INFO     | [data] queue_monitor thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:41:48,654 | INFO     | job.realtimelogging is not enabled
[2026-02-16 09:42:11] 2026-02-16 08:41:49,660 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-16 09:42:11] 2026-02-16 08:42:05,640 | INFO     | [monitor] cgroup control has ended
[2026-02-16 09:42:11] 2026-02-16 08:42:06,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139682464085824)>', '<ExcThread(monitor, started 139681974961920)>']
[2026-02-16 09:42:11] 2026-02-16 08:42:08,799 | INFO     | PID=65628 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-16 09:42:11] 2026-02-16 08:42:08,799 | INFO     | found 0 job(s) in 20 queues
[2026-02-16 09:42:11] 2026-02-16 08:42:08,799 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-16 09:42:11] 2026-02-16 08:42:08,799 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-16 09:42:11] 2026-02-16 08:42:08,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-16 09:42:11] 2026-02-16 08:42:08,799 | INFO     | [monitor] control thread has ended
[2026-02-16 09:42:11] 2026-02-16 08:42:11,174 | INFO     | all workflow threads have been joined
[2026-02-16 09:42:11] 2026-02-16 08:42:11,175 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-16 09:42:11] 2026-02-16 08:42:11,175 | INFO     | traces error code: 0
[2026-02-16 09:42:11] 2026-02-16 08:42:11,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-16 09:42:11] 2026-02-16 08:42:11,225 [wrapper] ==== pilot stdout END ====
[2026-02-16 09:42:11] 2026-02-16 08:42:11,228 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-16 09:42:11] 2026-02-16 08:42:11,231 [wrapper] pilotpid: 65628
[2026-02-16 09:42:11] 2026-02-16 08:42:11,233 [wrapper] Pilot exit status: 0
[2026-02-16 09:42:11] 2026-02-16 08:42:11,241 [wrapper] pandaids: 7017659012
[2026-02-16 09:42:11] 2026-02-16 08:42:11,260 [wrapper] cleanup supervisor_pilot   76145 65629
[2026-02-16 09:42:11] 2026-02-16 08:42:11,262 [wrapper] Test setup, not cleaning
[2026-02-16 09:42:11] 2026-02-16 08:42:11,265 [wrapper] apfmon messages muted
[2026-02-16 09:42:11] 2026-02-16 08:42:11,267 [wrapper] ==== wrapper stdout END ====
[2026-02-16 09:42:11] 2026-02-16 08:42:11,270 [wrapper] ==== wrapper stderr END ====
[2026-02-16 09:42:11]  *** Error codes and diagnostics ***
[2026-02-16 09:42:11]     "exeErrorCode": 0,
[2026-02-16 09:42:11]     "exeErrorDiag": "",
[2026-02-16 09:42:11]     "pilotErrorCode": 0,
[2026-02-16 09:42:11]     "pilotErrorDiag": "",
[2026-02-16 09:42:11]  *** Listing of results directory ***
[2026-02-16 09:42:11] total 945652
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc    584627 Feb 15 14:09 pilot3.tar.gz
[2026-02-16 09:42:11] -rwx------ 1 boinc boinc     36322 Feb 15 14:10 runpilot2-wrapper.sh
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc      5111 Feb 15 14:11 queuedata.json
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc       100 Feb 16 07:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-16 09:42:11] -rwxr-xr-x 1 boinc boinc      7986 Feb 16 07:17 run_atlas
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc       105 Feb 16 07:17 job.xml
[2026-02-16 09:42:11] -rw-r--r-- 2 boinc boinc 678352373 Feb 16 07:17 EVNT.48431094._000247.pool.root.1
[2026-02-16 09:42:11] drwxrwx--x 2 boinc boinc      4096 Feb 16 07:17 shared
[2026-02-16 09:42:11] -rw-r--r-- 2 boinc boinc    597970 Feb 16 07:17 input.tar.gz
[2026-02-16 09:42:11] -rw-r--r-- 2 boinc boinc     15845 Feb 16 07:17 start_atlas.sh
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc         0 Feb 16 07:17 boinc_setup_complete
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc      6199 Feb 16 07:17 init_data.xml
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc         0 Feb 16 07:17 boinc_lockfile
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc      2556 Feb 16 07:17 pandaJob.out
[2026-02-16 09:42:11] -rw------- 1 boinc boinc    998716 Feb 16 07:17 agis_schedconf.cvmfs.json
[2026-02-16 09:42:11] -rw------- 1 boinc boinc   1513015 Feb 16 07:17 agis_ddmendpoints.agis.ALL.json
[2026-02-16 09:42:11] -rw------- 1 boinc boinc       430 Feb 16 07:17 workernode_map.json
[2026-02-16 09:42:11] drwx------ 5 boinc boinc      4096 Feb 16 07:17 pilot3
[2026-02-16 09:42:11] -rw------- 1 boinc boinc 282953665 Feb 16 09:41 HITS.48431096._051689.pool.root.1
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc       530 Feb 16 09:41 boinc_task_state.xml
[2026-02-16 09:42:11] -rw------- 1 boinc boinc      1030 Feb 16 09:41 memory_monitor_summary.json
[2026-02-16 09:42:11] -rw------- 1 boinc boinc    335852 Feb 16 09:41 log.48431096._051689.job.log.tgz.1
[2026-02-16 09:42:11] -rw------- 1 boinc boinc      6315 Feb 16 09:41 heartbeat.json
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc        27 Feb 16 09:42 wrapper_checkpoint.txt
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc      8192 Feb 16 09:42 boinc_mmap_file
[2026-02-16 09:42:11] -rw------- 1 boinc boinc        95 Feb 16 09:42 pilot_heartbeat.json
[2026-02-16 09:42:11] -rw------- 1 boinc boinc      4818 Feb 16 09:42 pilotlog.txt
[2026-02-16 09:42:11] -rw------- 1 boinc boinc   1227405 Feb 16 09:42 log.48431096._051689.job.log.1
[2026-02-16 09:42:11] -rw------- 1 boinc boinc       357 Feb 16 09:42 output.list
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc       620 Feb 16 09:42 runtime_log
[2026-02-16 09:42:11] -rw------- 1 boinc boinc   1576960 Feb 16 09:42 result.tar.gz
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc      8916 Feb 16 09:42 runtime_log.err
[2026-02-16 09:42:11] -rw------- 1 boinc boinc       661 Feb 16 09:42 g2TLDmF4qB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm24pKDmuRsVZn.diag
[2026-02-16 09:42:11] -rw-r--r-- 1 boinc boinc     12422 Feb 16 09:42 stderr.txt
[2026-02-16 09:42:11] HITS file was successfully produced:
[2026-02-16 09:42:11] -rw------- 1 boinc boinc 282953665 Feb 16 09:41 shared/HITS.pool.root.1
[2026-02-16 09:42:11]  *** Contents of shared directory: ***
[2026-02-16 09:42:11] total 940928
[2026-02-16 09:42:11] -rw-r--r-- 2 boinc boinc 678352373 Feb 16 07:17 ATLAS.root_0
[2026-02-16 09:42:11] -rw-r--r-- 2 boinc boinc    597970 Feb 16 07:17 input.tar.gz
[2026-02-16 09:42:11] -rw-r--r-- 2 boinc boinc     15845 Feb 16 07:17 start_atlas.sh
[2026-02-16 09:42:11] -rw------- 1 boinc boinc 282953665 Feb 16 09:41 HITS.pool.root.1
[2026-02-16 09:42:11] -rw------- 1 boinc boinc   1576960 Feb 16 09:42 result.tar.gz
09:42:12 (61582): run_atlas exited; CPU time 25089.671246
09:42:12 (61582): called boinc_finish(0)

</stderr_txt>
]]>

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