Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:42:33 (76403): wrapper (7.7.26015): starting
09:42:33 (76403): wrapper: running run_atlas (--nthreads 3)
[2026-02-16 09:42:33] Arguments: --nthreads 3
[2026-02-16 09:42:33] Threads: 3
[2026-02-16 09:42:33] Checking for CVMFS
[2026-02-16 09:42:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 09:42:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 09:42:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 09:42:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 09:42:34] 2.9.2.0 4025606 1992 64440 156277 1 49 20771770 36864000 0 130560 0 688010 99.987 42268 16307 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-16 09:42:34] CVMFS is ok
[2026-02-16 09:42:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-16 09:42:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-16 09:42:34] Further information can be found at the LHC@home message board.
[2026-02-16 09:42:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 09:42:34] Checking for apptainer binary...
[2026-02-16 09:42:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 09:42:34] Running /usr/bin/apptainer --version
[2026-02-16 09:42:34] apptainer version 1.4.1-1.1
[2026-02-16 09:42:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 09:42:34] atlasA221b
[2026-02-16 09:42:34] apptainer works
[2026-02-16 09:42:34] Set ATHENA_PROC_NUMBER=3
[2026-02-16 09:42:34] Set ATHENA_CORE_NUMBER=3
[2026-02-16 09:42:34] Starting ATLAS job with PandaID=7017766846
[2026-02-16 09:42:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-16 12:03:10]  *** The last 200 lines of the pilot log: ***
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,514 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-16 12:03:10] 2026-02-16 11:02:38,514 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,514 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-16 12:03:10] 2026-02-16 11:02:38,514 | INFO     | job 7017766846 has completed (purged errors)
[2026-02-16 12:03:10] 2026-02-16 11:02:38,514 | INFO     | overall cleanup function is called
[2026-02-16 12:03:10] 2026-02-16 11:02:39,515 | INFO     | --- collectZombieJob: --- 10, [84870]
[2026-02-16 12:03:10] 2026-02-16 11:02:39,515 | INFO     | zombie collector waiting for pid 84870
[2026-02-16 12:03:10] 2026-02-16 11:02:39,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-16 12:03:10] 2026-02-16 11:02:39,516 | INFO     | collected zombie processes
[2026-02-16 12:03:10] 2026-02-16 11:02:39,516 | INFO     | will attempt to kill all subprocesses of pid=84870
[2026-02-16 12:03:10] 2026-02-16 11:02:39,569 | INFO     | process IDs to be killed: [84870] (in reverse order)
[2026-02-16 12:03:10] 2026-02-16 11:02:39,601 | WARNING  | found no corresponding commands to process id(s)
[2026-02-16 12:03:10] 2026-02-16 11:02:39,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-16 12:03:10] 2026-02-16 11:02:39,602 | INFO     | did not find any defunct processes belonging to 84870
[2026-02-16 12:03:10] 2026-02-16 11:02:39,604 | INFO     | did not find any defunct processes belonging to 84870
[2026-02-16 12:03:10] 2026-02-16 11:02:39,604 | INFO     | ready for new job
[2026-02-16 12:03:10] 2026-02-16 11:02:39,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-16 12:03:10] 2026-02-16 11:02:39,604 | INFO     | **************************************
[2026-02-16 12:03:10] 2026-02-16 11:02:39,604 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-16 12:03:10] 2026-02-16 11:02:39,605 | INFO     | **************************************
[2026-02-16 12:03:10] 2026-02-16 11:02:39,605 | INFO     | 
[2026-02-16 12:03:10] 2026-02-16 11:02:39,605 | INFO     | architecture information:
[2026-02-16 12:03:10] 2026-02-16 11:02:39,605 | INFO     | executing command: cat /etc/os-release
[2026-02-16 12:03:10] 2026-02-16 11:02:39,615 | INFO     | cat /etc/os-release:
[2026-02-16 12:03:10] NAME="CentOS Linux"
[2026-02-16 12:03:10] VERSION="7 (Core)"
[2026-02-16 12:03:10] ID="centos"
[2026-02-16 12:03:10] ID_LIKE="rhel fedora"
[2026-02-16 12:03:10] VERSION_ID="7"
[2026-02-16 12:03:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-16 12:03:10] ANSI_COLOR="0;31"
[2026-02-16 12:03:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-16 12:03:10] HOME_URL="https://www.centos.org/"
[2026-02-16 12:03:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-16 12:03:10] 
[2026-02-16 12:03:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-16 12:03:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-16 12:03:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-16 12:03:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-16 12:03:10] 
[2026-02-16 12:03:10] 2026-02-16 11:02:39,615 | INFO     | **************************************
[2026-02-16 12:03:10] 2026-02-16 11:02:40,118 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-16 12:03:10] 2026-02-16 11:02:40,131 | INFO     | sufficient remaining disk space (335264350208 B)
[2026-02-16 12:03:10] 2026-02-16 11:02:40,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-16 12:03:10] 2026-02-16 11:02:40,132 | INFO     | current server update state: UPDATING_FINAL
[2026-02-16 12:03:10] 2026-02-16 11:02:40,132 | INFO     | update_server=False
[2026-02-16 12:03:10] 2026-02-16 11:02:40,132 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-16 12:03:10] 2026-02-16 11:02:40,132 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-16 12:03:10] 2026-02-16 11:02:40,286 | INFO     | all data control threads have been joined
[2026-02-16 12:03:10] 2026-02-16 11:02:40,502 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-16 12:03:10] 2026-02-16 11:02:40,502 | INFO     | aborting loop
[2026-02-16 12:03:10] 2026-02-16 11:02:40,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-16 12:03:10] 2026-02-16 11:02:41,102 | INFO     | all payload control threads have been joined
[2026-02-16 12:03:10] 2026-02-16 11:02:41,137 | INFO     | [job] retrieve thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:41,138 | INFO     | [job] queue monitor thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:41,212 | INFO     | all job control threads have been joined
[2026-02-16 12:03:10] 2026-02-16 11:02:41,292 | INFO     | [data] control thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:41,508 | INFO     | [job] job monitor thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:41,947 | INFO     | [payload] execute_payloads thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,010 | INFO     | [job] validate thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,061 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-16 12:03:10] 2026-02-16 11:02:42,108 | INFO     | [payload] control thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,115 | INFO     | [job] create_data_payload thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,218 | INFO     | [job] control thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,290 | INFO     | [data] copytool_in thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,507 | INFO     | [payload] validate_pre thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,577 | INFO     | [payload] validate_post thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,646 | INFO     | [payload] failed_post thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:42,745 | INFO     | [data] copytool_out thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:46,068 | INFO     | [data] queue_monitor thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:51,039 | INFO     | job.realtimelogging is not enabled
[2026-02-16 12:03:10] 2026-02-16 11:02:52,045 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-16 12:03:10] 2026-02-16 11:02:56,836 | INFO     | [monitor] cgroup control has ended
[2026-02-16 12:03:10] 2026-02-16 11:02:57,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995775350592)>', '<ExcThread(monitor, started 139995029419776)>']
[2026-02-16 12:03:10] 2026-02-16 11:03:02,804 | INFO     | all workflow threads have been joined
[2026-02-16 12:03:10] 2026-02-16 11:03:02,805 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-16 12:03:10] 2026-02-16 11:03:02,805 | INFO     | traces error code: 0
[2026-02-16 12:03:10] 2026-02-16 11:03:02,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-16 12:03:10] 2026-02-16 11:03:10,314 | INFO     | PID=80444 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-16 12:03:10] 2026-02-16 11:03:10,314 | INFO     | found 0 job(s) in 20 queues
[2026-02-16 12:03:10] 2026-02-16 11:03:10,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-16 12:03:10] 2026-02-16 11:03:10,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-16 12:03:10] 2026-02-16 11:03:10,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-16 12:03:10] 2026-02-16 11:03:10,314 | INFO     | [monitor] control thread has ended
[2026-02-16 12:03:10] 2026-02-16 11:03:10,361 [wrapper] ==== pilot stdout END ====
[2026-02-16 12:03:10] 2026-02-16 11:03:10,364 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-16 12:03:10] 2026-02-16 11:03:10,367 [wrapper] pilotpid: 80444
[2026-02-16 12:03:10] 2026-02-16 11:03:10,370 [wrapper] Pilot exit status: 0
[2026-02-16 12:03:10] 2026-02-16 11:03:10,378 [wrapper] pandaids: 7017766846
[2026-02-16 12:03:10] 2026-02-16 11:03:10,397 [wrapper] cleanup supervisor_pilot   90743 80445
[2026-02-16 12:03:10] 2026-02-16 11:03:10,400 [wrapper] Test setup, not cleaning
[2026-02-16 12:03:10] 2026-02-16 11:03:10,403 [wrapper] apfmon messages muted
[2026-02-16 12:03:10] 2026-02-16 11:03:10,406 [wrapper] ==== wrapper stdout END ====
[2026-02-16 12:03:10] 2026-02-16 11:03:10,408 [wrapper] ==== wrapper stderr END ====
[2026-02-16 12:03:10]  *** Error codes and diagnostics ***
[2026-02-16 12:03:10]     "exeErrorCode": 0,
[2026-02-16 12:03:10]     "exeErrorDiag": "",
[2026-02-16 12:03:10]     "pilotErrorCode": 0,
[2026-02-16 12:03:10]     "pilotErrorDiag": "",
[2026-02-16 12:03:10]  *** Listing of results directory ***
[2026-02-16 12:03:10] total 940184
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc    584627 Feb 15 16:31 pilot3.tar.gz
[2026-02-16 12:03:10] -rwx------ 1 boinc boinc     36322 Feb 15 16:31 runpilot2-wrapper.sh
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc      5111 Feb 15 16:32 queuedata.json
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc       100 Feb 16 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-16 12:03:10] -rwxr-xr-x 1 boinc boinc      7986 Feb 16 09:42 run_atlas
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc       105 Feb 16 09:42 job.xml
[2026-02-16 12:03:10] -rw-r--r-- 2 boinc boinc 672190824 Feb 16 09:42 EVNT.48431094._000795.pool.root.1
[2026-02-16 12:03:10] -rw-r--r-- 2 boinc boinc    597963 Feb 16 09:42 input.tar.gz
[2026-02-16 12:03:10] -rw-r--r-- 2 boinc boinc     15845 Feb 16 09:42 start_atlas.sh
[2026-02-16 12:03:10] drwxrwx--x 2 boinc boinc      4096 Feb 16 09:42 shared
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc         0 Feb 16 09:42 boinc_setup_complete
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc      6199 Feb 16 09:42 init_data.xml
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc         0 Feb 16 09:42 boinc_lockfile
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc      2555 Feb 16 09:42 pandaJob.out
[2026-02-16 12:03:10] -rw------- 1 boinc boinc   1000948 Feb 16 09:42 agis_schedconf.cvmfs.json
[2026-02-16 12:03:10] -rw------- 1 boinc boinc   1513015 Feb 16 09:42 agis_ddmendpoints.agis.ALL.json
[2026-02-16 12:03:10] -rw------- 1 boinc boinc       430 Feb 16 09:42 workernode_map.json
[2026-02-16 12:03:10] drwx------ 5 boinc boinc      4096 Feb 16 09:42 pilot3
[2026-02-16 12:03:10] -rw------- 1 boinc boinc 283667022 Feb 16 12:02 HITS.48431096._053623.pool.root.1
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc       530 Feb 16 12:02 boinc_task_state.xml
[2026-02-16 12:03:10] -rw------- 1 boinc boinc        95 Feb 16 12:02 pilot_heartbeat.json
[2026-02-16 12:03:10] -rw------- 1 boinc boinc      1018 Feb 16 12:02 memory_monitor_summary.json
[2026-02-16 12:03:10] -rw------- 1 boinc boinc    290236 Feb 16 12:02 log.48431096._053623.job.log.tgz.1
[2026-02-16 12:03:10] -rw------- 1 boinc boinc      6322 Feb 16 12:02 heartbeat.json
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc      8192 Feb 16 12:02 boinc_mmap_file
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc        27 Feb 16 12:02 wrapper_checkpoint.txt
[2026-02-16 12:03:10] -rw------- 1 boinc boinc       745 Feb 16 12:03 pilotlog.txt
[2026-02-16 12:03:10] -rw------- 1 boinc boinc   1194788 Feb 16 12:03 log.48431096._053623.job.log.1
[2026-02-16 12:03:10] -rw------- 1 boinc boinc       357 Feb 16 12:03 output.list
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc       620 Feb 16 12:03 runtime_log
[2026-02-16 12:03:10] -rw------- 1 boinc boinc   1505280 Feb 16 12:03 result.tar.gz
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc      8916 Feb 16 12:03 runtime_log.err
[2026-02-16 12:03:10] -rw------- 1 boinc boinc       661 Feb 16 12:03 johMDm9GtB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmfIqKDmPyIiWm.diag
[2026-02-16 12:03:10] -rw-r--r-- 1 boinc boinc     12214 Feb 16 12:03 stderr.txt
[2026-02-16 12:03:10] HITS file was successfully produced:
[2026-02-16 12:03:10] -rw------- 1 boinc boinc 283667022 Feb 16 12:02 shared/HITS.pool.root.1
[2026-02-16 12:03:10]  *** Contents of shared directory: ***
[2026-02-16 12:03:10] total 935540
[2026-02-16 12:03:10] -rw-r--r-- 2 boinc boinc 672190824 Feb 16 09:42 ATLAS.root_0
[2026-02-16 12:03:10] -rw-r--r-- 2 boinc boinc    597963 Feb 16 09:42 input.tar.gz
[2026-02-16 12:03:10] -rw-r--r-- 2 boinc boinc     15845 Feb 16 09:42 start_atlas.sh
[2026-02-16 12:03:10] -rw------- 1 boinc boinc 283667022 Feb 16 12:02 HITS.pool.root.1
[2026-02-16 12:03:10] -rw------- 1 boinc boinc   1505280 Feb 16 12:03 result.tar.gz
12:03:12 (76403): run_atlas exited; CPU time 24393.268454
12:03:12 (76403): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN