Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:09:06 (3362347): wrapper (7.7.26015): starting
02:09:06 (3362347): wrapper: running run_atlas (--nthreads 4)
[2026-02-16 02:09:06] Arguments: --nthreads 4
[2026-02-16 02:09:06] Threads: 4
[2026-02-16 02:09:06] Checking for CVMFS
[2026-02-16 02:09:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-16 02:09:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-16 02:09:06] Running cvmfs_config stat atlas.cern.ch
[2026-02-16 02:09:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-16 02:09:06] 2.9.2.0 3128936 1448 80364 156267 0 188 23392426 36864001 0 130560 0 640813 99.991 26198 11040 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-16 02:09:06] CVMFS is ok
[2026-02-16 02:09:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-16 02:09:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-16 02:09:06] Further information can be found at the LHC@home message board.
[2026-02-16 02:09:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-16 02:09:06] Checking for apptainer binary...
[2026-02-16 02:09:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-16 02:09:06] Running /usr/bin/apptainer --version
[2026-02-16 02:09:06] apptainer version 1.4.1-1.1
[2026-02-16 02:09:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-16 02:09:06] madmaxA277
[2026-02-16 02:09:06] apptainer works
[2026-02-16 02:09:06] Set ATHENA_PROC_NUMBER=4
[2026-02-16 02:09:06] Set ATHENA_CORE_NUMBER=4
[2026-02-16 02:09:06] Starting ATLAS job with PandaID=7011889527
[2026-02-16 02:09:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-16 03:27:38]  *** The last 200 lines of the pilot log: ***
[2026-02-16 03:27:38] 2026-02-16 02:27:06,826 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-16 03:27:38] 2026-02-16 02:27:06,826 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-16 03:27:38] 2026-02-16 02:27:06,826 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-16 03:27:38] 2026-02-16 02:27:06,826 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-16 03:27:38] 2026-02-16 02:27:06,826 | INFO     | job 7011889527 has completed (purged errors)
[2026-02-16 03:27:38] 2026-02-16 02:27:06,826 | INFO     | overall cleanup function is called
[2026-02-16 03:27:38] 2026-02-16 02:27:07,833 | INFO     | --- collectZombieJob: --- 10, [3370953]
[2026-02-16 03:27:38] 2026-02-16 02:27:07,833 | INFO     | zombie collector waiting for pid 3370953
[2026-02-16 03:27:38] 2026-02-16 02:27:07,833 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-16 03:27:38] 2026-02-16 02:27:07,833 | INFO     | collected zombie processes
[2026-02-16 03:27:38] 2026-02-16 02:27:07,833 | INFO     | will attempt to kill all subprocesses of pid=3370953
[2026-02-16 03:27:38] 2026-02-16 02:27:07,876 | INFO     | process IDs to be killed: [3370953] (in reverse order)
[2026-02-16 03:27:38] 2026-02-16 02:27:07,907 | WARNING  | found no corresponding commands to process id(s)
[2026-02-16 03:27:38] 2026-02-16 02:27:07,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-16 03:27:38] 2026-02-16 02:27:07,909 | INFO     | did not find any defunct processes belonging to 3370953
[2026-02-16 03:27:38] 2026-02-16 02:27:07,910 | INFO     | did not find any defunct processes belonging to 3370953
[2026-02-16 03:27:38] 2026-02-16 02:27:07,910 | INFO     | ready for new job
[2026-02-16 03:27:38] 2026-02-16 02:27:07,910 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-16 03:27:38] 2026-02-16 02:27:07,911 | INFO     | **************************************
[2026-02-16 03:27:38] 2026-02-16 02:27:07,911 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-16 03:27:38] 2026-02-16 02:27:07,911 | INFO     | **************************************
[2026-02-16 03:27:38] 2026-02-16 02:27:07,911 | INFO     | 
[2026-02-16 03:27:38] 2026-02-16 02:27:07,912 | INFO     | architecture information:
[2026-02-16 03:27:38] 2026-02-16 02:27:07,912 | INFO     | executing command: cat /etc/os-release
[2026-02-16 03:27:38] 2026-02-16 02:27:07,925 | INFO     | cat /etc/os-release:
[2026-02-16 03:27:38] NAME="CentOS Linux"
[2026-02-16 03:27:38] VERSION="7 (Core)"
[2026-02-16 03:27:38] ID="centos"
[2026-02-16 03:27:38] ID_LIKE="rhel fedora"
[2026-02-16 03:27:38] VERSION_ID="7"
[2026-02-16 03:27:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-16 03:27:38] ANSI_COLOR="0;31"
[2026-02-16 03:27:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-16 03:27:38] HOME_URL="https://www.centos.org/"
[2026-02-16 03:27:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-16 03:27:38] 
[2026-02-16 03:27:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-16 03:27:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-16 03:27:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-16 03:27:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-16 03:27:38] 
[2026-02-16 03:27:38] 2026-02-16 02:27:07,925 | INFO     | **************************************
[2026-02-16 03:27:38] 2026-02-16 02:27:08,429 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-16 03:27:38] 2026-02-16 02:27:08,446 | INFO     | sufficient remaining disk space (331374133248 B)
[2026-02-16 03:27:38] 2026-02-16 02:27:08,446 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-16 03:27:38] 2026-02-16 02:27:08,446 | INFO     | current server update state: UPDATING_FINAL
[2026-02-16 03:27:38] 2026-02-16 02:27:08,446 | INFO     | update_server=False
[2026-02-16 03:27:38] 2026-02-16 02:27:08,446 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-16 03:27:38] 2026-02-16 02:27:08,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-16 03:27:38] 2026-02-16 02:27:08,447 | INFO     | aborting loop
[2026-02-16 03:27:38] 2026-02-16 02:27:08,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-16 03:27:38] 2026-02-16 02:27:08,538 | INFO     | all data control threads have been joined
[2026-02-16 03:27:38] 2026-02-16 02:27:08,867 | INFO     | all payload control threads have been joined
[2026-02-16 03:27:38] 2026-02-16 02:27:09,452 | INFO     | [job] retrieve thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:09,452 | INFO     | [job] job monitor thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:09,484 | INFO     | [job] create_data_payload thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:09,528 | INFO     | [payload] validate_pre thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:09,544 | INFO     | [data] control thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:09,601 | INFO     | [payload] validate_post thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:09,687 | INFO     | [data] copytool_in thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:09,687 | INFO     | all job control threads have been joined
[2026-02-16 03:27:38] 2026-02-16 02:27:09,873 | INFO     | [payload] control thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:10,039 | INFO     | [payload] failed_post thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:10,453 | INFO     | [data] copytool_out thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:10,668 | INFO     | [payload] execute_payloads thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:10,693 | INFO     | [job] control thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:10,701 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:10,858 | INFO     | [job] validate thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:11,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-16 03:27:38] 2026-02-16 02:27:11,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-16 03:27:38] 2026-02-16 02:27:12,356 | INFO     | [job] queue monitor thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:15,165 | INFO     | [data] queue_monitor thread has finished
[2026-02-16 03:27:38] 2026-02-16 02:27:23,274 | INFO     | [monitor] cgroup control has ended
[2026-02-16 03:27:38] 2026-02-16 02:27:24,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178682545984)>', '<ExcThread(monitor, started 140178052077312)>']
[2026-02-16 03:27:38] 2026-02-16 02:27:29,292 | INFO     | all workflow threads have been joined
[2026-02-16 03:27:38] 2026-02-16 02:27:29,292 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-16 03:27:38] 2026-02-16 02:27:29,292 | INFO     | traces error code: 0
[2026-02-16 03:27:38] 2026-02-16 02:27:29,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-16 03:27:38] 2026-02-16 02:27:38,663 | INFO     | PID=3366450 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-16 03:27:38] 2026-02-16 02:27:38,663 | INFO     | found 0 job(s) in 20 queues
[2026-02-16 03:27:38] 2026-02-16 02:27:38,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-16 03:27:38] 2026-02-16 02:27:38,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-16 03:27:38] 2026-02-16 02:27:38,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-16 03:27:38] 2026-02-16 02:27:38,663 | INFO     | [monitor] control thread has ended
[2026-02-16 03:27:38] 2026-02-16 02:27:38,735 [wrapper] ==== pilot stdout END ====
[2026-02-16 03:27:38] 2026-02-16 02:27:38,739 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-16 03:27:38] 2026-02-16 02:27:38,743 [wrapper] pilotpid: 3366450
[2026-02-16 03:27:38] 2026-02-16 02:27:38,747 [wrapper] Pilot exit status: 0
[2026-02-16 03:27:38] 2026-02-16 02:27:38,757 [wrapper] pandaids: 7011889527
[2026-02-16 03:27:38] 2026-02-16 02:27:38,778 [wrapper] cleanup supervisor_pilot 3376655 3366451
[2026-02-16 03:27:38] 2026-02-16 02:27:38,781 [wrapper] Test setup, not cleaning
[2026-02-16 03:27:38] 2026-02-16 02:27:38,785 [wrapper] apfmon messages muted
[2026-02-16 03:27:38] 2026-02-16 02:27:38,789 [wrapper] ==== wrapper stdout END ====
[2026-02-16 03:27:38] 2026-02-16 02:27:38,792 [wrapper] ==== wrapper stderr END ====
[2026-02-16 03:27:38]  *** Error codes and diagnostics ***
[2026-02-16 03:27:38]     "exeErrorCode": 0,
[2026-02-16 03:27:38]     "exeErrorDiag": "",
[2026-02-16 03:27:38]     "pilotErrorCode": 0,
[2026-02-16 03:27:38]     "pilotErrorDiag": "",
[2026-02-16 03:27:38]  *** Listing of results directory ***
[2026-02-16 03:27:38] total 672056
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc    584627 Feb 15 09:47 pilot3.tar.gz
[2026-02-16 03:27:38] -rwx------ 1 boinc boinc     36322 Feb 15 09:49 runpilot2-wrapper.sh
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc      5111 Feb 15 09:52 queuedata.json
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc       100 Feb 16 02:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-16 03:27:38] -rwxr-xr-x 1 boinc boinc      7986 Feb 16 02:09 run_atlas
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc       105 Feb 16 02:09 job.xml
[2026-02-16 03:27:38] -rw-r--r-- 2 boinc boinc 493167522 Feb 16 02:09 EVNT.48318016._000284.pool.root.1
[2026-02-16 03:27:38] -rw-r--r-- 2 boinc boinc    597944 Feb 16 02:09 input.tar.gz
[2026-02-16 03:27:38] -rw-r--r-- 2 boinc boinc     15845 Feb 16 02:09 start_atlas.sh
[2026-02-16 03:27:38] drwxrwx--x 2 boinc boinc      4096 Feb 16 02:09 shared
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc         0 Feb 16 02:09 boinc_setup_complete
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc      6372 Feb 16 02:09 init_data.xml
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc         0 Feb 16 02:09 boinc_lockfile
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc      2522 Feb 16 02:09 pandaJob.out
[2026-02-16 03:27:38] -rw------- 1 boinc boinc   1000992 Feb 16 02:09 agis_schedconf.cvmfs.json
[2026-02-16 03:27:38] -rw------- 1 boinc boinc   1513015 Feb 16 02:09 agis_ddmendpoints.agis.ALL.json
[2026-02-16 03:27:38] -rw------- 1 boinc boinc       431 Feb 16 02:09 workernode_map.json
[2026-02-16 03:27:38] drwx------ 5 boinc boinc      4096 Feb 16 02:09 pilot3
[2026-02-16 03:27:38] -rw------- 1 boinc boinc        95 Feb 16 03:26 pilot_heartbeat.json
[2026-02-16 03:27:38] -rw------- 1 boinc boinc 189172777 Feb 16 03:26 HITS.48318018._014686.pool.root.1
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc       530 Feb 16 03:26 boinc_task_state.xml
[2026-02-16 03:27:38] -rw------- 1 boinc boinc      1021 Feb 16 03:26 memory_monitor_summary.json
[2026-02-16 03:27:38] -rw------- 1 boinc boinc    276253 Feb 16 03:27 log.48318018._014686.job.log.tgz.1
[2026-02-16 03:27:38] -rw------- 1 boinc boinc      6325 Feb 16 03:27 heartbeat.json
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc        27 Feb 16 03:27 wrapper_checkpoint.txt
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc      8192 Feb 16 03:27 boinc_mmap_file
[2026-02-16 03:27:38] -rw------- 1 boinc boinc       747 Feb 16 03:27 pilotlog.txt
[2026-02-16 03:27:38] -rw------- 1 boinc boinc    687694 Feb 16 03:27 log.48318018._014686.job.log.1
[2026-02-16 03:27:38] -rw------- 1 boinc boinc       357 Feb 16 03:27 output.list
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc       620 Feb 16 03:27 runtime_log
[2026-02-16 03:27:38] -rw------- 1 boinc boinc    983040 Feb 16 03:27 result.tar.gz
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc      8916 Feb 16 03:27 runtime_log.err
[2026-02-16 03:27:38] -rw------- 1 boinc boinc       661 Feb 16 03:27 nLyLDmnzmB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmSZpKDmJ8XEYn.diag
[2026-02-16 03:27:38] -rw-r--r-- 1 boinc boinc     11213 Feb 16 03:27 stderr.txt
[2026-02-16 03:27:38] HITS file was successfully produced:
[2026-02-16 03:27:38] -rw------- 1 boinc boinc 189172777 Feb 16 03:26 shared/HITS.pool.root.1
[2026-02-16 03:27:38]  *** Contents of shared directory: ***
[2026-02-16 03:27:38] total 667920
[2026-02-16 03:27:38] -rw-r--r-- 2 boinc boinc 493167522 Feb 16 02:09 ATLAS.root_0
[2026-02-16 03:27:38] -rw-r--r-- 2 boinc boinc    597944 Feb 16 02:09 input.tar.gz
[2026-02-16 03:27:38] -rw-r--r-- 2 boinc boinc     15845 Feb 16 02:09 start_atlas.sh
[2026-02-16 03:27:38] -rw------- 1 boinc boinc 189172777 Feb 16 03:26 HITS.pool.root.1
[2026-02-16 03:27:38] -rw------- 1 boinc boinc    983040 Feb 16 03:27 result.tar.gz
03:27:40 (3362347): run_atlas exited; CPU time 17530.024415
03:27:40 (3362347): called boinc_finish(0)

</stderr_txt>
]]>

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