Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:48:23 (5767): wrapper (7.7.26015): starting
17:48:23 (5767): wrapper: running run_atlas (--nthreads 12)
[2026-02-15 17:48:23] Arguments: --nthreads 12
[2026-02-15 17:48:23] Threads: 12
[2026-02-15 17:48:23] Checking for CVMFS
[2026-02-15 17:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 17:48:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 17:48:24] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 17:48:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 17:48:24] 2.13.0.0 3197 234 67044 156267 2 188 2587411 4096001 0 130560 1 279557 99.994 2912 21 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://128.142.35.143:3125 1
[2026-02-15 17:48:24] CVMFS is ok
[2026-02-15 17:48:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 17:48:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 17:48:24] Further information can be found at the LHC@home message board.
[2026-02-15 17:48:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 17:48:24] Checking for apptainer binary...
[2026-02-15 17:48:24] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2026-02-15 17:48:24] apptainer is not installed, using version from CVMFS
[2026-02-15 17:48:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 17:48:25] dagobert
[2026-02-15 17:48:25] apptainer works
[2026-02-15 17:48:25] Set ATHENA_PROC_NUMBER=12
[2026-02-15 17:48:25] Set ATHENA_CORE_NUMBER=12
[2026-02-15 17:48:25] Starting ATLAS job with PandaID=7011889489
[2026-02-15 17:48:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 18:17:53]  *** The last 200 lines of the pilot log: ***
[2026-02-15 18:17:53]  guid=4ab1e9b1-b674-41ef-9bed-f4b8f7b3ea41
[2026-02-15 18:17:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-15 18:17:53]  is_altstaged=None
[2026-02-15 18:17:53]  is_tar=False
[2026-02-15 18:17:53]  lfn=log.48318018._014648.job.log.tgz.1
[2026-02-15 18:17:53]  mtime=0
[2026-02-15 18:17:53]  protocol_id=None
[2026-02-15 18:17:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-15 18:17:53]  replicas=None
[2026-02-15 18:17:53]  scope=mc23_13p6TeV
[2026-02-15 18:17:53]  status=None
[2026-02-15 18:17:53]  status_code=0
[2026-02-15 18:17:53]  storage_token=
[2026-02-15 18:17:53]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-7011889489/log.48318018._014648.job.log.tgz.1
[2026-02-15 18:17:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/0a/log.48318018._014648.job.log.tgz.1
[2026-02-15 18:17:53]  workdir=None
[2026-02-15 18:17:53] ]
[2026-02-15 18:17:53] 2026-02-15 17:17:20,311 | INFO     | transferring file log.48318018._014648.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-7011889489/log.48318018._014648.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-15 18:17:53] 2026-02-15 17:17:20,311 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-7011889489/log.48318018._014648.job.log.tgz.1 /var/lib/boinc/slots/0/log.48318018._014648.job
[2026-02-15 18:17:53] 2026-02-15 17:17:20,319 | INFO     | adding to output.list: log.48318018._014648.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/38/0a/log.48318018._014648.job.log.tg
[2026-02-15 18:17:53] 2026-02-15 17:17:20,319 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-15 18:17:53] 2026-02-15 17:17:20,319 | INFO     | summary of transferred files:
[2026-02-15 18:17:53] 2026-02-15 17:17:20,319 | INFO     |  -- lfn=log.48318018._014648.job.log.tgz.1, status_code=0, status=transferred
[2026-02-15 18:17:53] 2026-02-15 17:17:20,319 | INFO     | stage-out finished correctly
[2026-02-15 18:17:53] 2026-02-15 17:17:20,338 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-15 18:17:53] 2026-02-15 17:17:20,852 | INFO     | time since job start (1728s) is within the limit (349056.0s)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,759 | INFO     | job 7011889489 has state=finished
[2026-02-15 18:17:53] 2026-02-15 17:17:21,759 | INFO     | preparing for final server update for job 7011889489 in state='finished'
[2026-02-15 18:17:53] 2026-02-15 17:17:21,759 | INFO     | reading metadata from: /var/lib/boinc/slots/0/PanDA_Pilot-7011889489/jobReport.json
[2026-02-15 18:17:53] 2026-02-15 17:17:21,760 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/0/workernode_map.json
[2026-02-15 18:17:53] 2026-02-15 17:17:21,760 | INFO     | this job has now completed (state=finished)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,760 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,760 | INFO     | log transfer has been attempted: DONE
[2026-02-15 18:17:53] 2026-02-15 17:17:21,760 | INFO     | job 7011889489 has finished - writing final server update
[2026-02-15 18:17:53] 2026-02-15 17:17:21,761 | INFO     | total number of processed events: 400 (read)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,762 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-7011889489/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,762 | INFO     | extracted standard info from prmon json
[2026-02-15 18:17:53] 2026-02-15 17:17:21,762 | INFO     | extracted standard memory fields from prmon json
[2026-02-15 18:17:53] 2026-02-15 17:17:21,762 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-15 18:17:53] 2026-02-15 17:17:21,762 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-15 18:17:53] 2026-02-15 17:17:21,762 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | fitting pss+swap vs Time
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | sum of square deviations: 3294945.5
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | sum of deviations: 87411780.00000001
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | mean x: 1771175072.5
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | mean y: 3204263.8181818184
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | intersect: -46984391063.28331
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | chi2: 5.740118198656723e-06
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | current memory leak: 26.53 B/s (using 22 data points, chi2=0.00)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | could have reported an average CPU frequency of 3283 MHz (4 samples)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | ..............................
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | . Timing measurements:
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | . get job = 0 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | . initial setup = 2 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,763 | INFO     | . payload setup = 1 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,764 | INFO     | . stage-in = 0 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,764 | INFO     | . payload execution = 1710 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,764 | INFO     | . stage-out = 0 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,764 | INFO     | . log creation = 0 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,764 | INFO     | ..............................
[2026-02-15 18:17:53] 2026-02-15 17:17:21,794 | INFO     | 
[2026-02-15 18:17:53] 2026-02-15 17:17:21,794 | INFO     | job summary report
[2026-02-15 18:17:53] 2026-02-15 17:17:21,794 | INFO     | --------------------------------------------------
[2026-02-15 18:17:53] 2026-02-15 17:17:21,794 | INFO     | PanDA job id: 7011889489
[2026-02-15 18:17:53] 2026-02-15 17:17:21,794 | INFO     | task id: 48318018
[2026-02-15 18:17:53] 2026-02-15 17:17:21,794 | INFO     | errors: (none)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | pilot state: finished 
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | transexitcode: 0
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | exeerrorcode: 0
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | exeerrordiag: 
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | exitcode: 0
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | exitmsg: OK
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | cpuconsumptiontime: 19014 s
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | nevents: 400
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | neventsw: 0
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | pid: 14551
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | pgrp: 14551
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | corecount: 12
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | event service: False
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | sizes: {0: 2282220, 11: 2282220, 1715: 2307021, 1717: 2316075, 1719: 2316213}
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | --------------------------------------------------
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | 
[2026-02-15 18:17:53] 2026-02-15 17:17:21,795 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | job 7011889489 has completed (purged errors)
[2026-02-15 18:17:53] 2026-02-15 17:17:21,805 | INFO     | overall cleanup function is called
[2026-02-15 18:17:53] 2026-02-15 17:17:22,812 | INFO     | --- collectZombieJob: --- 10, [14551]
[2026-02-15 18:17:53] 2026-02-15 17:17:22,812 | INFO     | zombie collector waiting for pid 14551
[2026-02-15 18:17:53] 2026-02-15 17:17:22,812 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 18:17:53] 2026-02-15 17:17:22,812 | INFO     | collected zombie processes
[2026-02-15 18:17:53] 2026-02-15 17:17:22,812 | INFO     | will attempt to kill all subprocesses of pid=14551
[2026-02-15 18:17:53] 2026-02-15 17:17:22,839 | INFO     | process IDs to be killed: [14551] (in reverse order)
[2026-02-15 18:17:53] 2026-02-15 17:17:22,858 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 18:17:53] 2026-02-15 17:17:22,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 18:17:53] 2026-02-15 17:17:22,859 | INFO     | did not find any defunct processes belonging to 14551
[2026-02-15 18:17:53] 2026-02-15 17:17:22,861 | INFO     | did not find any defunct processes belonging to 14551
[2026-02-15 18:17:53] 2026-02-15 17:17:22,861 | INFO     | ready for new job
[2026-02-15 18:17:53] 2026-02-15 17:17:22,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 18:17:53] 2026-02-15 17:17:22,861 | INFO     | **************************************
[2026-02-15 18:17:53] 2026-02-15 17:17:22,861 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 18:17:53] 2026-02-15 17:17:22,861 | INFO     | **************************************
[2026-02-15 18:17:53] 2026-02-15 17:17:22,861 | INFO     | 
[2026-02-15 18:17:53] 2026-02-15 17:17:22,862 | INFO     | architecture information:
[2026-02-15 18:17:53] 2026-02-15 17:17:22,862 | INFO     | executing command: cat /etc/os-release
[2026-02-15 18:17:53] 2026-02-15 17:17:22,867 | INFO     | cat /etc/os-release:
[2026-02-15 18:17:53] NAME="CentOS Linux"
[2026-02-15 18:17:53] VERSION="7 (Core)"
[2026-02-15 18:17:53] ID="centos"
[2026-02-15 18:17:53] ID_LIKE="rhel fedora"
[2026-02-15 18:17:53] VERSION_ID="7"
[2026-02-15 18:17:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 18:17:53] ANSI_COLOR="0;31"
[2026-02-15 18:17:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 18:17:53] HOME_URL="https://www.centos.org/"
[2026-02-15 18:17:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 18:17:53] 
[2026-02-15 18:17:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 18:17:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 18:17:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 18:17:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 18:17:53] 
[2026-02-15 18:17:53] 2026-02-15 17:17:22,867 | INFO     | **************************************
[2026-02-15 18:17:53] 2026-02-15 17:17:22,898 | WARNING  | process 14551 can no longer be monitored (due to stat problems) - aborting
[2026-02-15 18:17:53] 2026-02-15 17:17:22,914 | INFO     | using path: /var/lib/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 18:17:53] 2026-02-15 17:17:22,934 | INFO     | number of running child processes to parent process 14551: 1
[2026-02-15 18:17:53] 2026-02-15 17:17:22,934 | INFO     | maximum number of monitored processes: 6
[2026-02-15 18:17:53] 2026-02-15 17:17:22,934 | INFO     | aborting job monitoring since job object (job id=7011889489) has expired
[2026-02-15 18:17:53] 2026-02-15 17:17:23,370 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | INFO     | sufficient remaining disk space (120947998720 B)
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | INFO     | update_server=False
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 18:17:53] 2026-02-15 17:17:23,380 | INFO     | will abort loop
[2026-02-15 18:17:53] 2026-02-15 17:17:23,652 | INFO     | all payload control threads have been joined
[2026-02-15 18:17:53] 2026-02-15 17:17:23,770 | INFO     | all job control threads have been joined
[2026-02-15 18:17:53] 2026-02-15 17:17:24,089 | INFO     | job.realtimelogging is not enabled
[2026-02-15 18:17:53] 2026-02-15 17:17:24,187 | INFO     | all data control threads have been joined
[2026-02-15 18:17:53] 2026-02-15 17:17:24,385 | INFO     | [job] retrieve thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,385 | INFO     | [job] queue monitor thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,386 | INFO     | [job] job monitor thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,435 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,438 | INFO     | [job] validate thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,464 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,504 | INFO     | [payload] validate_post thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,552 | INFO     | [data] copytool_in thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,657 | INFO     | [payload] control thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,776 | INFO     | [job] control thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:24,925 | INFO     | [payload] failed_post thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:25,094 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:25,193 | INFO     | [data] control thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:25,383 | INFO     | [data] copytool_out thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:25,673 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:26,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 18:17:53] 2026-02-15 17:17:30,369 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 18:17:53] 2026-02-15 17:17:34,922 | INFO     | [monitor] cgroup control has ended
[2026-02-15 18:17:53] 2026-02-15 17:17:35,085 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140007355606848)>', '<ExcThread(monitor, started 140006597322496)>']
[2026-02-15 18:17:53] 2026-02-15 17:17:40,111 | INFO     | all workflow threads have been joined
[2026-02-15 18:17:53] 2026-02-15 17:17:40,111 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 18:17:53] 2026-02-15 17:17:40,111 | INFO     | traces error code: 0
[2026-02-15 18:17:53] 2026-02-15 17:17:40,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 18:17:53] 2026-02-15 17:17:53,917 | INFO     | PID=10034 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-15 18:17:53] 2026-02-15 17:17:53,918 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 18:17:53] 2026-02-15 17:17:53,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 18:17:53] 2026-02-15 17:17:53,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 18:17:53] 2026-02-15 17:17:53,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 18:17:53] 2026-02-15 17:17:53,918 | INFO     | [monitor] control thread has ended
[2026-02-15 18:17:53] 2026-02-15 17:17:53,949 [wrapper] ==== pilot stdout END ====
[2026-02-15 18:17:53] 2026-02-15 17:17:53,950 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 18:17:53] 2026-02-15 17:17:53,951 [wrapper] pilotpid: 10034
[2026-02-15 18:17:53] 2026-02-15 17:17:53,953 [wrapper] Pilot exit status: 0
[2026-02-15 18:17:53] 2026-02-15 17:17:53,957 [wrapper] pandaids: 7011889489
[2026-02-15 18:17:53] 2026-02-15 17:17:53,970 [wrapper] cleanup supervisor_pilot 19121 10035
[2026-02-15 18:17:53] 2026-02-15 17:17:53,971 [wrapper] Test setup, not cleaning
[2026-02-15 18:17:53] 2026-02-15 17:17:53,972 [wrapper] apfmon messages muted
[2026-02-15 18:17:53] 2026-02-15 17:17:53,973 [wrapper] ==== wrapper stdout END ====
[2026-02-15 18:17:53] 2026-02-15 17:17:53,974 [wrapper] ==== wrapper stderr END ====
[2026-02-15 18:17:53]  *** Error codes and diagnostics ***
[2026-02-15 18:17:53]     "exeErrorCode": 0,
[2026-02-15 18:17:53]     "exeErrorDiag": "",
[2026-02-15 18:17:53]     "pilotErrorCode": 0,
[2026-02-15 18:17:53]     "pilotErrorDiag": "",
[2026-02-15 18:17:53]  *** Listing of results directory ***
[2026-02-15 18:17:53] total 670540
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc    584627 Feb 15 09:47 pilot3.tar.gz
[2026-02-15 18:17:53] -rwx------ 1 boinc boinc     36322 Feb 15 09:51 runpilot2-wrapper.sh
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc      5111 Feb 15 09:55 queuedata.json
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc       100 Feb 15 17:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 18:17:53] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 17:48 run_atlas
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc       105 Feb 15 17:48 job.xml
[2026-02-15 18:17:53] -rw-r--r-- 2 boinc boinc     15845 Feb 15 17:48 start_atlas.sh
[2026-02-15 18:17:53] drwxrwx--x 2 boinc boinc      4096 Feb 15 17:48 shared
[2026-02-15 18:17:53] -rw-r--r-- 2 boinc boinc    597947 Feb 15 17:48 input.tar.gz
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc      7167 Feb 15 17:48 init_data.xml
[2026-02-15 18:17:53] -rw-r--r-- 2 boinc boinc 495067483 Feb 15 17:48 EVNT.48318016._000283.pool.root.1
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc         0 Feb 15 17:48 boinc_lockfile
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc      2523 Feb 15 17:48 pandaJob.out
[2026-02-15 18:17:53] -rw------- 1 boinc boinc   1000992 Feb 15 17:48 agis_schedconf.cvmfs.json
[2026-02-15 18:17:53] -rw------- 1 boinc boinc   1513015 Feb 15 17:48 agis_ddmendpoints.agis.ALL.json
[2026-02-15 18:17:53] -rw------- 1 boinc boinc       420 Feb 15 17:48 workernode_map.json
[2026-02-15 18:17:53] drwx------ 5 boinc boinc      4096 Feb 15 17:48 pilot3
[2026-02-15 18:17:53] -rw------- 1 boinc boinc 186329248 Feb 15 18:17 HITS.48318018._014648.pool.root.1
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc       530 Feb 15 18:17 boinc_task_state.xml
[2026-02-15 18:17:53] -rw------- 1 boinc boinc      1019 Feb 15 18:17 memory_monitor_summary.json
[2026-02-15 18:17:53] -rw------- 1 boinc boinc    369395 Feb 15 18:17 log.48318018._014648.job.log.tgz.1
[2026-02-15 18:17:53] -rw------- 1 boinc boinc      6287 Feb 15 18:17 heartbeat.json
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc      8192 Feb 15 18:17 boinc_mmap_file
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc        27 Feb 15 18:17 wrapper_checkpoint.txt
[2026-02-15 18:17:53] -rw------- 1 boinc boinc       745 Feb 15 18:17 pilotlog.txt
[2026-02-15 18:17:53] -rw------- 1 boinc boinc        95 Feb 15 18:17 pilot_heartbeat.json
[2026-02-15 18:17:53] -rw------- 1 boinc boinc    283468 Feb 15 18:17 log.48318018._014648.job.log.1
[2026-02-15 18:17:53] -rw------- 1 boinc boinc       357 Feb 15 18:17 output.list
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc       620 Feb 15 18:17 runtime_log
[2026-02-15 18:17:53] -rw------- 1 boinc boinc    665600 Feb 15 18:17 result.tar.gz
[2026-02-15 18:17:53] -rw------- 1 boinc boinc       638 Feb 15 18:17 s40KDmx1mB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmchpKDmMKyItn.diag
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc      8765 Feb 15 18:17 runtime_log.err
[2026-02-15 18:17:53] -rw-r--r-- 1 boinc boinc     21439 Feb 15 18:17 stderr.txt
[2026-02-15 18:17:53] HITS file was successfully produced:
[2026-02-15 18:17:53] -rw------- 1 boinc boinc 186329248 Feb 15 18:17 shared/HITS.pool.root.1
[2026-02-15 18:17:53]  *** Contents of shared directory: ***
[2026-02-15 18:17:53] total 666692
[2026-02-15 18:17:53] -rw-r--r-- 2 boinc boinc     15845 Feb 15 17:48 start_atlas.sh
[2026-02-15 18:17:53] -rw-r--r-- 2 boinc boinc    597947 Feb 15 17:48 input.tar.gz
[2026-02-15 18:17:53] -rw-r--r-- 2 boinc boinc 495067483 Feb 15 17:48 ATLAS.root_0
[2026-02-15 18:17:53] -rw------- 1 boinc boinc 186329248 Feb 15 18:17 HITS.pool.root.1
[2026-02-15 18:17:53] -rw------- 1 boinc boinc    665600 Feb 15 18:17 result.tar.gz
18:17:55 (5767): run_atlas exited; CPU time 19017.899622
18:17:55 (5767): called boinc_finish(0)

</stderr_txt>
]]>

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