Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:30:41 (621768): wrapper (7.7.26015): starting
13:30:41 (621768): wrapper: running run_atlas (--nthreads 12)
[2026-02-15 13:30:41] Arguments: --nthreads 12
[2026-02-15 13:30:41] Threads: 12
[2026-02-15 13:30:41] Checking for CVMFS
[2026-02-15 13:30:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 13:30:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 13:30:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 13:30:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 13:30:43] 2.11.0.0 1422433 984 87272 156267 1 188 3477459 6144001 11999 130560 0 8505473 99.999 36964 548 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-02-15 13:30:43] CVMFS is ok
[2026-02-15 13:30:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 13:30:43] Checking for apptainer binary...
[2026-02-15 13:30:43] apptainer is not installed, using version from CVMFS
[2026-02-15 13:30:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 13:30:43] radiat0r
[2026-02-15 13:30:43] apptainer works
[2026-02-15 13:30:43] Set ATHENA_PROC_NUMBER=12
[2026-02-15 13:30:43] Set ATHENA_CORE_NUMBER=12
[2026-02-15 13:30:43] Starting ATLAS job with PandaID=7011032757
[2026-02-15 13:30:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 14:49:23]  *** The last 200 lines of the pilot log: ***
[2026-02-15 14:49:23]  mtime=0
[2026-02-15 14:49:23]  protocol_id=None
[2026-02-15 14:49:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-15 14:49:23]  replicas=None
[2026-02-15 14:49:23]  scope=mc23_13p6TeV
[2026-02-15 14:49:23]  status=None
[2026-02-15 14:49:23]  status_code=0
[2026-02-15 14:49:23]  storage_token=
[2026-02-15 14:49:23]  surl=/var/lib/boinc/slots/23/PanDA_Pilot-7011032757/log.48508763._004924.job.log.tgz.1
[2026-02-15 14:49:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/11/log.48508763._004924.job.log.tgz.1
[2026-02-15 14:49:23]  workdir=None
[2026-02-15 14:49:23] ]
[2026-02-15 14:49:23] 2026-02-15 14:48:42,365 | INFO     | transferring file log.48508763._004924.job.log.tgz.1 from /var/lib/boinc/slots/23/PanDA_Pilot-7011032757/log.48508763._004924.job.log.tgz.1 to /var/lib/boinc/slots
[2026-02-15 14:49:23] 2026-02-15 14:48:42,365 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/23/PanDA_Pilot-7011032757/log.48508763._004924.job.log.tgz.1 /var/lib/boinc/slots/23/log.48508763._004924.j
[2026-02-15 14:49:23] 2026-02-15 14:48:42,395 | INFO     | adding to output.list: log.48508763._004924.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/11/log.48508763._004924.job.log.tg
[2026-02-15 14:49:23] 2026-02-15 14:48:42,396 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-15 14:49:23] 2026-02-15 14:48:42,396 | INFO     | summary of transferred files:
[2026-02-15 14:49:23] 2026-02-15 14:48:42,396 | INFO     |  -- lfn=log.48508763._004924.job.log.tgz.1, status_code=0, status=transferred
[2026-02-15 14:49:23] 2026-02-15 14:48:42,396 | INFO     | stage-out finished correctly
[2026-02-15 14:49:23] 2026-02-15 14:48:42,530 | INFO     | time since job start (4655s) is within the limit (349056.0s)
[2026-02-15 14:49:23] 2026-02-15 14:48:44,536 | INFO     | time since job start (4657s) is within the limit (349056.0s)
[2026-02-15 14:49:23] 2026-02-15 14:48:45,595 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-15 14:49:23] 2026-02-15 14:48:46,542 | INFO     | time since job start (4659s) is within the limit (349056.0s)
[2026-02-15 14:49:23] 2026-02-15 14:48:47,955 | INFO     | job 7011032757 has state=finished
[2026-02-15 14:49:23] 2026-02-15 14:48:47,955 | INFO     | preparing for final server update for job 7011032757 in state='finished'
[2026-02-15 14:49:23] 2026-02-15 14:48:47,956 | INFO     | reading metadata from: /var/lib/boinc/slots/23/PanDA_Pilot-7011032757/jobReport.json
[2026-02-15 14:49:23] 2026-02-15 14:48:47,959 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/23/workernode_map.json
[2026-02-15 14:49:23] 2026-02-15 14:48:47,959 | INFO     | this job has now completed (state=finished)
[2026-02-15 14:49:23] 2026-02-15 14:48:47,959 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-15 14:49:23] 2026-02-15 14:48:47,960 | INFO     | log transfer has been attempted: DONE
[2026-02-15 14:49:23] 2026-02-15 14:48:47,960 | INFO     | job 7011032757 has finished - writing final server update
[2026-02-15 14:49:23] 2026-02-15 14:48:47,960 | INFO     | total number of processed events: 400 (read)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,037 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-7011032757/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,038 | INFO     | extracted standard info from prmon json
[2026-02-15 14:49:23] 2026-02-15 14:48:48,038 | INFO     | extracted standard memory fields from prmon json
[2026-02-15 14:49:23] 2026-02-15 14:48:48,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-15 14:49:23] 2026-02-15 14:48:48,039 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-15 14:49:23] 2026-02-15 14:48:48,039 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-15 14:49:23] 2026-02-15 14:48:48,041 | INFO     | fitting pss+swap vs Time
[2026-02-15 14:49:23] 2026-02-15 14:48:48,041 | INFO     | sum of square deviations: 101843770.0
[2026-02-15 14:49:23] 2026-02-15 14:48:48,041 | INFO     | sum of deviations: 3122495145.0
[2026-02-15 14:49:23] 2026-02-15 14:48:48,041 | INFO     | mean x: 1771164673.0
[2026-02-15 14:49:23] 2026-02-15 14:48:48,042 | INFO     | mean y: 2765724.927536232
[2026-02-15 14:49:23] 2026-02-15 14:48:48,042 | INFO     | intersect: -54300537191.27453
[2026-02-15 14:49:23] 2026-02-15 14:48:48,042 | INFO     | chi2: 0.04690574259144117
[2026-02-15 14:49:23] 2026-02-15 14:48:48,042 | INFO     | current memory leak: 30.66 B/s (using 69 data points, chi2=0.05)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,043 | INFO     | could have reported an average CPU frequency of 2399 MHz (6 samples)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,043 | INFO     | ..............................
[2026-02-15 14:49:23] 2026-02-15 14:48:48,043 | INFO     | . Timing measurements:
[2026-02-15 14:49:23] 2026-02-15 14:48:48,043 | INFO     | . get job = 0 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,043 | INFO     | . initial setup = 8 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,043 | INFO     | . payload setup = 8 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,043 | INFO     | . stage-in = 0 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,044 | INFO     | . payload execution = 4630 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,044 | INFO     | . stage-out = 1 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,044 | INFO     | . log creation = 0 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,044 | INFO     | ..............................
[2026-02-15 14:49:23] 2026-02-15 14:48:48,172 | WARNING  | process 632335 can no longer be monitored (due to stat problems) - aborting
[2026-02-15 14:49:23] 2026-02-15 14:48:48,172 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-7011032757/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,520 | INFO     | 
[2026-02-15 14:49:23] 2026-02-15 14:48:48,520 | INFO     | job summary report
[2026-02-15 14:49:23] 2026-02-15 14:48:48,520 | INFO     | --------------------------------------------------
[2026-02-15 14:49:23] 2026-02-15 14:48:48,520 | INFO     | PanDA job id: 7011032757
[2026-02-15 14:49:23] 2026-02-15 14:48:48,520 | INFO     | task id: 48508763
[2026-02-15 14:49:23] 2026-02-15 14:48:48,520 | INFO     | errors: (none)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | pilot state: finished 
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | transexitcode: 0
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | exeerrorcode: 0
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | exeerrordiag: 
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | exitcode: 0
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | exitmsg: OK
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | cpuconsumptiontime: 50395 s
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | nevents: 400
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | neventsw: 0
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | pid: 632335
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | pgrp: 632335
[2026-02-15 14:49:23] 2026-02-15 14:48:48,521 | INFO     | corecount: 12
[2026-02-15 14:49:23] 2026-02-15 14:48:48,522 | INFO     | event service: False
[2026-02-15 14:49:23] 2026-02-15 14:48:48,522 | INFO     | sizes: {0: 2281823, 1: 2282284, 11: 2282284, 4642: 2308565, 4643: 2308564, 4644: 2317620, 4647: 2317804, 4650: 2317998}
[2026-02-15 14:49:23] 2026-02-15 14:48:48,522 | INFO     | --------------------------------------------------
[2026-02-15 14:49:23] 2026-02-15 14:48:48,522 | INFO     | 
[2026-02-15 14:49:23] 2026-02-15 14:48:48,522 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2026-02-15 14:49:23] 2026-02-15 14:48:48,548 | INFO     | time since job start (4661s) is within the limit (349056.0s)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,556 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,556 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,556 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,556 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,557 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | job 7011032757 has completed (purged errors)
[2026-02-15 14:49:23] 2026-02-15 14:48:48,558 | INFO     | overall cleanup function is called
[2026-02-15 14:49:23] 2026-02-15 14:48:48,992 | INFO     | number of running child processes to parent process 632335: 1
[2026-02-15 14:49:23] 2026-02-15 14:48:48,992 | INFO     | maximum number of monitored processes: 6
[2026-02-15 14:49:23] 2026-02-15 14:48:48,992 | INFO     | aborting job monitoring since job object (job id=7011032757) has expired
[2026-02-15 14:49:23] 2026-02-15 14:48:49,569 | INFO     | --- collectZombieJob: --- 10, [632335]
[2026-02-15 14:49:23] 2026-02-15 14:48:49,570 | INFO     | zombie collector waiting for pid 632335
[2026-02-15 14:49:23] 2026-02-15 14:48:49,570 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 14:49:23] 2026-02-15 14:48:49,570 | INFO     | collected zombie processes
[2026-02-15 14:49:23] 2026-02-15 14:48:49,570 | INFO     | will attempt to kill all subprocesses of pid=632335
[2026-02-15 14:49:23] 2026-02-15 14:48:50,334 | INFO     | process IDs to be killed: [632335] (in reverse order)
[2026-02-15 14:49:23] 2026-02-15 14:48:50,594 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 14:49:23] 2026-02-15 14:48:50,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 14:49:23] 2026-02-15 14:48:50,622 | INFO     | did not find any defunct processes belonging to 632335
[2026-02-15 14:49:23] 2026-02-15 14:48:50,647 | INFO     | did not find any defunct processes belonging to 632335
[2026-02-15 14:49:23] 2026-02-15 14:48:50,647 | INFO     | ready for new job
[2026-02-15 14:49:23] 2026-02-15 14:48:50,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 14:49:23] 2026-02-15 14:48:50,649 | INFO     | **************************************
[2026-02-15 14:49:23] 2026-02-15 14:48:50,650 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 14:49:23] 2026-02-15 14:48:50,650 | INFO     | **************************************
[2026-02-15 14:49:23] 2026-02-15 14:48:50,650 | INFO     | 
[2026-02-15 14:49:23] 2026-02-15 14:48:50,686 | INFO     | architecture information:
[2026-02-15 14:49:23] 2026-02-15 14:48:50,686 | INFO     | executing command: cat /etc/os-release
[2026-02-15 14:49:23] 2026-02-15 14:48:50,718 | INFO     | cat /etc/os-release:
[2026-02-15 14:49:23] NAME="CentOS Linux"
[2026-02-15 14:49:23] VERSION="7 (Core)"
[2026-02-15 14:49:23] ID="centos"
[2026-02-15 14:49:23] ID_LIKE="rhel fedora"
[2026-02-15 14:49:23] VERSION_ID="7"
[2026-02-15 14:49:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 14:49:23] ANSI_COLOR="0;31"
[2026-02-15 14:49:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 14:49:23] HOME_URL="https://www.centos.org/"
[2026-02-15 14:49:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 14:49:23] 
[2026-02-15 14:49:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 14:49:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 14:49:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 14:49:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 14:49:23] 
[2026-02-15 14:49:23] 2026-02-15 14:48:50,718 | INFO     | **************************************
[2026-02-15 14:49:23] 2026-02-15 14:48:51,221 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2026-02-15 14:49:23] 2026-02-15 14:48:51,248 | INFO     | sufficient remaining disk space (1695071338496 B)
[2026-02-15 14:49:23] 2026-02-15 14:48:51,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 14:49:23] 2026-02-15 14:48:51,249 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 14:49:23] 2026-02-15 14:48:51,249 | INFO     | update_server=False
[2026-02-15 14:49:23] 2026-02-15 14:48:51,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 14:49:23] 2026-02-15 14:48:51,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 14:49:23] 2026-02-15 14:48:51,352 | INFO     | all data control threads have been joined
[2026-02-15 14:49:23] 2026-02-15 14:48:51,495 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-15 14:49:23] 2026-02-15 14:48:51,496 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-15 14:49:23] 2026-02-15 14:48:51,496 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 14:49:23] 2026-02-15 14:48:51,496 | INFO     | will abort loop
[2026-02-15 14:49:23] 2026-02-15 14:48:51,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 14:49:23] 2026-02-15 14:48:51,984 | INFO     | all job control threads have been joined
[2026-02-15 14:49:23] 2026-02-15 14:48:52,254 | INFO     | [job] retrieve thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:52,299 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:52,356 | INFO     | [data] control thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:52,502 | INFO     | [job] job monitor thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:52,528 | INFO     | [job] validate thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:52,690 | INFO     | all payload control threads have been joined
[2026-02-15 14:49:23] 2026-02-15 14:48:52,700 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:52,925 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:52,988 | INFO     | [job] control thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:53,006 | INFO     | [payload] failed_post thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:53,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 14:49:23] 2026-02-15 14:48:53,255 | INFO     | [data] copytool_out thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:53,433 | INFO     | [data] copytool_in thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:53,628 | INFO     | [payload] validate_post thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:53,639 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:53,696 | INFO     | [payload] control thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:54,152 | INFO     | [job] queue monitor thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:48:55,696 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 14:49:23] 2026-02-15 14:49:13,760 | INFO     | [monitor] cgroup control has ended
[2026-02-15 14:49:23] 2026-02-15 14:49:14,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627283269440)>', '<ExcThread(monitor, started 139626996016896)>']
[2026-02-15 14:49:23] 2026-02-15 14:49:19,435 | INFO     | all workflow threads have been joined
[2026-02-15 14:49:23] 2026-02-15 14:49:19,436 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 14:49:23] 2026-02-15 14:49:19,436 | INFO     | traces error code: 0
[2026-02-15 14:49:23] 2026-02-15 14:49:19,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 14:49:23] 2026-02-15 14:49:22,606 | INFO     | PID=626785 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-15 14:49:23] 2026-02-15 14:49:22,607 | INFO     | .. there are 13 such processes running
[2026-02-15 14:49:23] 2026-02-15 14:49:22,608 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 14:49:23] 2026-02-15 14:49:22,608 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 14:49:23] 2026-02-15 14:49:22,608 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 14:49:23] 2026-02-15 14:49:22,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 14:49:23] 2026-02-15 14:49:22,608 | INFO     | [monitor] control thread has ended
[2026-02-15 14:49:23] 2026-02-15 14:49:22,782 [wrapper] ==== pilot stdout END ====
[2026-02-15 14:49:23] 2026-02-15 14:49:22,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 14:49:23] 2026-02-15 14:49:22,790 [wrapper] pilotpid: 626785
[2026-02-15 14:49:23] 2026-02-15 14:49:22,793 [wrapper] Pilot exit status: 0
[2026-02-15 14:49:23] 2026-02-15 14:49:22,806 [wrapper] pandaids: 7011032757
[2026-02-15 14:49:23] 2026-02-15 14:49:22,984 [wrapper] cleanup supervisor_pilot  864039 626786
[2026-02-15 14:49:23] 2026-02-15 14:49:22,989 [wrapper] Test setup, not cleaning
[2026-02-15 14:49:23] 2026-02-15 14:49:22,992 [wrapper] apfmon messages muted
[2026-02-15 14:49:23] 2026-02-15 14:49:22,996 [wrapper] ==== wrapper stdout END ====
[2026-02-15 14:49:23] 2026-02-15 14:49:22,999 [wrapper] ==== wrapper stderr END ====
[2026-02-15 14:49:23]  *** Error codes and diagnostics ***
[2026-02-15 14:49:23]     "exeErrorCode": 0,
[2026-02-15 14:49:23]     "exeErrorDiag": "",
[2026-02-15 14:49:23]     "pilotErrorCode": 0,
[2026-02-15 14:49:23]     "pilotErrorDiag": "",
[2026-02-15 14:49:23]  *** Listing of results directory ***
[2026-02-15 14:49:23] total 944160
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc    584627 Feb 15 05:05 pilot3.tar.gz
[2026-02-15 14:49:23] -rwx------ 1 boinc boinc     36322 Feb 15 05:08 runpilot2-wrapper.sh
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc      5111 Feb 15 05:10 queuedata.json
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc       100 Feb 15 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 14:49:23] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 13:30 run_atlas
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc       105 Feb 15 13:30 job.xml
[2026-02-15 14:49:23] -rw-r--r-- 2 boinc boinc     15845 Feb 15 13:30 start_atlas.sh
[2026-02-15 14:49:23] drwxrwx--x 2 boinc boinc      4096 Feb 15 13:30 shared
[2026-02-15 14:49:23] -rw-r--r-- 2 boinc boinc    597947 Feb 15 13:30 input.tar.gz
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc      9417 Feb 15 13:30 init_data.xml
[2026-02-15 14:49:23] -rw-r--r-- 2 boinc boinc 680008431 Feb 15 13:30 EVNT.48508760._000096.pool.root.1
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc         0 Feb 15 13:30 boinc_setup_complete
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc         0 Feb 15 13:30 boinc_lockfile
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc      2549 Feb 15 13:30 pandaJob.out
[2026-02-15 14:49:23] -rw------- 1 boinc boinc   1000992 Feb 15 13:30 agis_schedconf.cvmfs.json
[2026-02-15 14:49:23] -rw------- 1 boinc boinc   1513015 Feb 15 13:30 agis_ddmendpoints.agis.ALL.json
[2026-02-15 14:49:23] -rw------- 1 boinc boinc       419 Feb 15 13:31 workernode_map.json
[2026-02-15 14:49:23] drwx------ 5 boinc boinc      4096 Feb 15 13:31 pilot3
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc       530 Feb 15 14:47 boinc_task_state.xml
[2026-02-15 14:49:23] -rw------- 1 boinc boinc 280757965 Feb 15 14:47 HITS.48508763._004924.pool.root.1
[2026-02-15 14:49:23] -rw------- 1 boinc boinc      1031 Feb 15 14:48 memory_monitor_summary.json
[2026-02-15 14:49:23] -rw------- 1 boinc boinc    396213 Feb 15 14:48 log.48508763._004924.job.log.tgz.1
[2026-02-15 14:49:23] -rw------- 1 boinc boinc      6289 Feb 15 14:48 heartbeat.json
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc      8192 Feb 15 14:49 boinc_mmap_file
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc        27 Feb 15 14:49 wrapper_checkpoint.txt
[2026-02-15 14:49:23] -rw------- 1 boinc boinc       823 Feb 15 14:49 pilotlog.txt
[2026-02-15 14:49:23] -rw------- 1 boinc boinc        95 Feb 15 14:49 pilot_heartbeat.json
[2026-02-15 14:49:23] -rw------- 1 boinc boinc    666434 Feb 15 14:49 log.48508763._004924.job.log.1
[2026-02-15 14:49:23] -rw------- 1 boinc boinc       357 Feb 15 14:49 output.list
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc       620 Feb 15 14:49 runtime_log
[2026-02-15 14:49:23] -rw------- 1 boinc boinc   1075200 Feb 15 14:49 result.tar.gz
[2026-02-15 14:49:23] -rw------- 1 boinc boinc       642 Feb 15 14:49 wXdKDm3XjB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKCoKDmlKQmKn.diag
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc      8787 Feb 15 14:49 runtime_log.err
[2026-02-15 14:49:23] -rw-r--r-- 1 boinc boinc     21446 Feb 15 14:49 stderr.txt
[2026-02-15 14:49:23] HITS file was successfully produced:
[2026-02-15 14:49:23] -rw------- 1 boinc boinc 280757965 Feb 15 14:47 shared/HITS.pool.root.1
[2026-02-15 14:49:23]  *** Contents of shared directory: ***
[2026-02-15 14:49:23] total 939912
[2026-02-15 14:49:23] -rw-r--r-- 2 boinc boinc     15845 Feb 15 13:30 start_atlas.sh
[2026-02-15 14:49:23] -rw-r--r-- 2 boinc boinc    597947 Feb 15 13:30 input.tar.gz
[2026-02-15 14:49:23] -rw-r--r-- 2 boinc boinc 680008431 Feb 15 13:30 ATLAS.root_0
[2026-02-15 14:49:23] -rw------- 1 boinc boinc 280757965 Feb 15 14:47 HITS.pool.root.1
[2026-02-15 14:49:23] -rw------- 1 boinc boinc   1075200 Feb 15 14:49 result.tar.gz
14:49:24 (621768): run_atlas exited; CPU time 50694.087090
14:49:24 (621768): called boinc_finish(0)

</stderr_txt>
]]>

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