Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:18:25 (1010221): wrapper (7.7.26015): starting
20:18:25 (1010221): wrapper: running run_atlas (--nthreads 2)
[2026-02-15 20:18:25] Arguments: --nthreads 2
[2026-02-15 20:18:25] Threads: 2
[2026-02-15 20:18:25] Checking for CVMFS
[2026-02-15 20:18:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 20:18:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 20:18:26] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 20:18:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 20:18:26] 2.9.2.0 915081 1086 55344 156267 2 188 31489247 36864001 0 130560 0 287565 99.979 26145 20251 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 20:18:26] CVMFS is ok
[2026-02-15 20:18:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 20:18:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 20:18:26] Further information can be found at the LHC@home message board.
[2026-02-15 20:18:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 20:18:26] Checking for apptainer binary...
[2026-02-15 20:18:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 20:18:26] Running /usr/bin/apptainer --version
[2026-02-15 20:18:26] apptainer version 1.4.1-1.1
[2026-02-15 20:18:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 20:18:26] magicA244
[2026-02-15 20:18:26] apptainer works
[2026-02-15 20:18:26] Set ATHENA_PROC_NUMBER=2
[2026-02-15 20:18:26] Set ATHENA_CORE_NUMBER=2
[2026-02-15 20:18:26] Starting ATLAS job with PandaID=7011625460
[2026-02-15 20:18:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 22:20:03]  *** The last 200 lines of the pilot log: ***
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 22:20:03] 2026-02-15 21:19:36,060 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,061 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 22:20:03] 2026-02-15 21:19:36,061 | INFO     | job 7011625460 has completed (purged errors)
[2026-02-15 22:20:03] 2026-02-15 21:19:36,061 | INFO     | overall cleanup function is called
[2026-02-15 22:20:03] 2026-02-15 21:19:37,067 | INFO     | --- collectZombieJob: --- 10, [1018652]
[2026-02-15 22:20:03] 2026-02-15 21:19:37,067 | INFO     | zombie collector waiting for pid 1018652
[2026-02-15 22:20:03] 2026-02-15 21:19:37,067 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 22:20:03] 2026-02-15 21:19:37,068 | INFO     | collected zombie processes
[2026-02-15 22:20:03] 2026-02-15 21:19:37,068 | INFO     | will attempt to kill all subprocesses of pid=1018652
[2026-02-15 22:20:03] 2026-02-15 21:19:37,098 | INFO     | process IDs to be killed: [1018652] (in reverse order)
[2026-02-15 22:20:03] 2026-02-15 21:19:37,119 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 22:20:03] 2026-02-15 21:19:37,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 22:20:03] 2026-02-15 21:19:37,120 | INFO     | did not find any defunct processes belonging to 1018652
[2026-02-15 22:20:03] 2026-02-15 21:19:37,121 | INFO     | did not find any defunct processes belonging to 1018652
[2026-02-15 22:20:03] 2026-02-15 21:19:37,121 | INFO     | ready for new job
[2026-02-15 22:20:03] 2026-02-15 21:19:37,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 22:20:03] 2026-02-15 21:19:37,121 | INFO     | **************************************
[2026-02-15 22:20:03] 2026-02-15 21:19:37,121 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 22:20:03] 2026-02-15 21:19:37,121 | INFO     | **************************************
[2026-02-15 22:20:03] 2026-02-15 21:19:37,121 | INFO     | 
[2026-02-15 22:20:03] 2026-02-15 21:19:37,122 | INFO     | architecture information:
[2026-02-15 22:20:03] 2026-02-15 21:19:37,122 | INFO     | executing command: cat /etc/os-release
[2026-02-15 22:20:03] 2026-02-15 21:19:37,131 | INFO     | cat /etc/os-release:
[2026-02-15 22:20:03] NAME="CentOS Linux"
[2026-02-15 22:20:03] VERSION="7 (Core)"
[2026-02-15 22:20:03] ID="centos"
[2026-02-15 22:20:03] ID_LIKE="rhel fedora"
[2026-02-15 22:20:03] VERSION_ID="7"
[2026-02-15 22:20:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 22:20:03] ANSI_COLOR="0;31"
[2026-02-15 22:20:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 22:20:03] HOME_URL="https://www.centos.org/"
[2026-02-15 22:20:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 22:20:03] 
[2026-02-15 22:20:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 22:20:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 22:20:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 22:20:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 22:20:03] 
[2026-02-15 22:20:03] 2026-02-15 21:19:37,131 | INFO     | **************************************
[2026-02-15 22:20:03] 2026-02-15 21:19:37,634 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 22:20:03] 2026-02-15 21:19:37,646 | INFO     | sufficient remaining disk space (490161045504 B)
[2026-02-15 22:20:03] 2026-02-15 21:19:37,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | INFO     | update_server=False
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 22:20:03] 2026-02-15 21:19:37,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 22:20:03] 2026-02-15 21:19:37,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 22:20:03] 2026-02-15 21:19:38,339 | INFO     | all payload control threads have been joined
[2026-02-15 22:20:03] 2026-02-15 21:19:38,431 | INFO     | all data control threads have been joined
[2026-02-15 22:20:03] 2026-02-15 21:19:38,652 | INFO     | [job] retrieve thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:38,653 | INFO     | [job] queue monitor thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:38,708 | INFO     | [payload] validate_post thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:38,746 | INFO     | all job control threads have been joined
[2026-02-15 22:20:03] 2026-02-15 21:19:38,758 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:38,759 | INFO     | [job] validate thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:38,835 | INFO     | [data] copytool_in thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:39,137 | INFO     | [payload] failed_post thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:39,155 | WARNING  | process 1018652 can no longer be monitored (due to stat problems) - aborting
[2026-02-15 22:20:03] 2026-02-15 21:19:39,177 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 22:20:03] 2026-02-15 21:19:39,203 | INFO     | number of running child processes to parent process 1018652: 1
[2026-02-15 22:20:03] 2026-02-15 21:19:39,203 | INFO     | maximum number of monitored processes: 6
[2026-02-15 22:20:03] 2026-02-15 21:19:39,203 | INFO     | aborting job monitoring since job object (job id=7011625460) has expired
[2026-02-15 22:20:03] 2026-02-15 21:19:39,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 22:20:03] 2026-02-15 21:19:39,204 | INFO     | will abort loop
[2026-02-15 22:20:03] 2026-02-15 21:19:39,344 | INFO     | [payload] control thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:39,436 | INFO     | [data] control thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:39,752 | INFO     | [job] control thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:39,790 | INFO     | [data] copytool_out thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:39,985 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:40,141 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:40,209 | INFO     | [job] job monitor thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:41,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 22:20:03] 2026-02-15 21:19:45,089 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:47,823 | INFO     | job.realtimelogging is not enabled
[2026-02-15 22:20:03] 2026-02-15 21:19:48,829 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 22:20:03] 2026-02-15 21:19:56,924 | INFO     | [monitor] cgroup control has ended
[2026-02-15 22:20:03] 2026-02-15 21:19:58,552 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140527585630016)>', '<ExcThread(monitor, started 140526959453952)>']
[2026-02-15 22:20:03] 2026-02-15 21:19:58,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 22:20:03] 2026-02-15 21:19:58,760 | INFO     | [monitor] control thread has ended
[2026-02-15 22:20:03] 2026-02-15 21:20:03,578 | INFO     | all workflow threads have been joined
[2026-02-15 22:20:03] 2026-02-15 21:20:03,579 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 22:20:03] 2026-02-15 21:20:03,579 | INFO     | traces error code: 0
[2026-02-15 22:20:03] 2026-02-15 21:20:03,579 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 22:20:03] 2026-02-15 21:20:03,619 [wrapper] ==== pilot stdout END ====
[2026-02-15 22:20:03] 2026-02-15 21:20:03,621 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 22:20:03] 2026-02-15 21:20:03,624 [wrapper] pilotpid: 1014246
[2026-02-15 22:20:03] 2026-02-15 21:20:03,626 [wrapper] Pilot exit status: 0
[2026-02-15 22:20:03] 2026-02-15 21:20:03,631 [wrapper] pandaids: 7011625460
[2026-02-15 22:20:03] 2026-02-15 21:20:03,643 [wrapper] cleanup supervisor_pilot 1023559 1014247
[2026-02-15 22:20:03] 2026-02-15 21:20:03,645 [wrapper] Test setup, not cleaning
[2026-02-15 22:20:03] 2026-02-15 21:20:03,647 [wrapper] apfmon messages muted
[2026-02-15 22:20:03] 2026-02-15 21:20:03,649 [wrapper] ==== wrapper stdout END ====
[2026-02-15 22:20:03] 2026-02-15 21:20:03,651 [wrapper] ==== wrapper stderr END ====
[2026-02-15 22:20:03]  *** Error codes and diagnostics ***
[2026-02-15 22:20:03]     "exeErrorCode": 0,
[2026-02-15 22:20:03]     "exeErrorDiag": "",
[2026-02-15 22:20:03]     "pilotErrorCode": 0,
[2026-02-15 22:20:03]     "pilotErrorDiag": "",
[2026-02-15 22:20:03]  *** Listing of results directory ***
[2026-02-15 22:20:03] total 675444
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc    584627 Feb 15 08:00 pilot3.tar.gz
[2026-02-15 22:20:03] -rwx------ 1 boinc boinc     36322 Feb 15 08:00 runpilot2-wrapper.sh
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc      5111 Feb 15 08:01 queuedata.json
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc       100 Feb 15 20:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 22:20:03] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 20:18 run_atlas
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc       105 Feb 15 20:18 job.xml
[2026-02-15 22:20:03] -rw-r--r-- 2 boinc boinc 503349787 Feb 15 20:18 EVNT.48442096._000186.pool.root.1
[2026-02-15 22:20:03] -rw-r--r-- 2 boinc boinc    597954 Feb 15 20:18 input.tar.gz
[2026-02-15 22:20:03] -rw-r--r-- 2 boinc boinc     15845 Feb 15 20:18 start_atlas.sh
[2026-02-15 22:20:03] drwxrwx--x 2 boinc boinc      4096 Feb 15 20:18 shared
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc         0 Feb 15 20:18 boinc_setup_complete
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc      6208 Feb 15 20:18 init_data.xml
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc         0 Feb 15 20:18 boinc_lockfile
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc      2529 Feb 15 20:18 pandaJob.out
[2026-02-15 22:20:03] -rw------- 1 boinc boinc   1000992 Feb 15 20:18 agis_schedconf.cvmfs.json
[2026-02-15 22:20:03] -rw------- 1 boinc boinc   1513015 Feb 15 20:18 agis_ddmendpoints.agis.ALL.json
[2026-02-15 22:20:03] -rw------- 1 boinc boinc       422 Feb 15 20:18 workernode_map.json
[2026-02-15 22:20:03] drwx------ 5 boinc boinc      4096 Feb 15 20:18 pilot3
[2026-02-15 22:20:03] -rw------- 1 boinc boinc        95 Feb 15 22:19 pilot_heartbeat.json
[2026-02-15 22:20:03] -rw------- 1 boinc boinc 181755216 Feb 15 22:19 HITS.48442098._010125.pool.root.1
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc       530 Feb 15 22:19 boinc_task_state.xml
[2026-02-15 22:20:03] -rw------- 1 boinc boinc      1015 Feb 15 22:19 memory_monitor_summary.json
[2026-02-15 22:20:03] -rw------- 1 boinc boinc    265062 Feb 15 22:19 log.48442098._010125.job.log.tgz.1
[2026-02-15 22:20:03] -rw------- 1 boinc boinc      6296 Feb 15 22:19 heartbeat.json
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc        27 Feb 15 22:20 wrapper_checkpoint.txt
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc      8192 Feb 15 22:20 boinc_mmap_file
[2026-02-15 22:20:03] -rw------- 1 boinc boinc      5148 Feb 15 22:20 pilotlog.txt
[2026-02-15 22:20:03] -rw------- 1 boinc boinc   1046689 Feb 15 22:20 log.48442098._010125.job.log.1
[2026-02-15 22:20:03] -rw------- 1 boinc boinc       357 Feb 15 22:20 output.list
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc       620 Feb 15 22:20 runtime_log
[2026-02-15 22:20:03] -rw------- 1 boinc boinc   1331200 Feb 15 22:20 result.tar.gz
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc      8911 Feb 15 22:20 runtime_log.err
[2026-02-15 22:20:03] -rw------- 1 boinc boinc       660 Feb 15 22:20 3QxNDmhIlB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZIoKDmuQjFun.diag
[2026-02-15 22:20:03] -rw-r--r-- 1 boinc boinc     12997 Feb 15 22:20 stderr.txt
[2026-02-15 22:20:03] HITS file was successfully produced:
[2026-02-15 22:20:03] -rw------- 1 boinc boinc 181755216 Feb 15 22:19 shared/HITS.pool.root.1
[2026-02-15 22:20:03]  *** Contents of shared directory: ***
[2026-02-15 22:20:03] total 670960
[2026-02-15 22:20:03] -rw-r--r-- 2 boinc boinc 503349787 Feb 15 20:18 ATLAS.root_0
[2026-02-15 22:20:03] -rw-r--r-- 2 boinc boinc    597954 Feb 15 20:18 input.tar.gz
[2026-02-15 22:20:03] -rw-r--r-- 2 boinc boinc     15845 Feb 15 20:18 start_atlas.sh
[2026-02-15 22:20:03] -rw------- 1 boinc boinc 181755216 Feb 15 22:19 HITS.pool.root.1
[2026-02-15 22:20:03] -rw------- 1 boinc boinc   1331200 Feb 15 22:20 result.tar.gz
22:20:05 (1010221): run_atlas exited; CPU time 14100.050456
22:20:05 (1010221): called boinc_finish(0)

</stderr_txt>
]]>

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