Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
00:44:01 (1642240): wrapper (7.7.26015): starting
00:44:01 (1642240): wrapper: running run_atlas (--nthreads 4)
[2026-02-17 00:44:01] Arguments: --nthreads 4
[2026-02-17 00:44:01] Threads: 4
[2026-02-17 00:44:01] Checking for CVMFS
[2026-02-17 00:44:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-17 00:44:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-17 00:44:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-17 00:44:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-17 00:44:02] 2.13.3.0 11582 1439 48268 156299 1 49 26809919 33554433 0 130560 0 787930 99.989 44705 204 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-02-17 00:44:02] CVMFS is ok
[2026-02-17 00:44:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-17 00:44:02] Checking for apptainer binary...
[2026-02-17 00:44:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-17 00:44:02] Running /usr/bin/apptainer --version
[2026-02-17 00:44:02] apptainer version 1.4.5
[2026-02-17 00:44:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-17 00:44:02] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-02-17 00:44:02] apptainer works
[2026-02-17 00:44:02] Set ATHENA_PROC_NUMBER=4
[2026-02-17 00:44:02] Set ATHENA_CORE_NUMBER=4
[2026-02-17 00:44:02] Starting ATLAS job with PandaID=7011143243
[2026-02-17 00:44:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-17 01:41:21]  *** The last 200 lines of the pilot log: ***
[2026-02-17 01:41:21]  direct_access_wan=False
[2026-02-17 01:41:21]  domain=
[2026-02-17 01:41:21]  filesize=285658
[2026-02-17 01:41:21]  filetype=log
[2026-02-17 01:41:21]  guid=4135a56d-52fa-42e3-b046-2df8f085dfd8
[2026-02-17 01:41:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-17 01:41:21]  is_altstaged=None
[2026-02-17 01:41:21]  is_tar=False
[2026-02-17 01:41:21]  lfn=log.48442098._009847.job.log.tgz.1
[2026-02-17 01:41:21]  mtime=0
[2026-02-17 01:41:21]  protocol_id=None
[2026-02-17 01:41:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-17 01:41:21]  replicas=None
[2026-02-17 01:41:21]  scope=mc23_13p6TeV
[2026-02-17 01:41:21]  status=None
[2026-02-17 01:41:21]  status_code=0
[2026-02-17 01:41:21]  storage_token=
[2026-02-17 01:41:21]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7011143243/log.48442098._009847.job.log.tgz.1
[2026-02-17 01:41:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/50/log.48442098._009847.job.log.tgz.1
[2026-02-17 01:41:21]  workdir=None
[2026-02-17 01:41:21] ]
[2026-02-17 01:41:21] 2026-02-16 23:40:30,886 | INFO     | transferring file log.48442098._009847.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7011143243/log.48442098._009847.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-02-17 01:41:21] 2026-02-16 23:40:30,886 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7011143243/log.48442098._009847.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48442098._009847.job
[2026-02-17 01:41:21] 2026-02-16 23:40:30,895 | INFO     | adding to output.list: log.48442098._009847.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/50/log.48442098._009847.job.log.tg
[2026-02-17 01:41:21] 2026-02-16 23:40:30,895 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-17 01:41:21] 2026-02-16 23:40:30,895 | INFO     | summary of transferred files:
[2026-02-17 01:41:21] 2026-02-16 23:40:30,895 | INFO     |  -- lfn=log.48442098._009847.job.log.tgz.1, status_code=0, status=transferred
[2026-02-17 01:41:21] 2026-02-16 23:40:30,895 | INFO     | stage-out finished correctly
[2026-02-17 01:41:21] 2026-02-16 23:40:30,920 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-17 01:41:21] 2026-02-16 23:40:30,973 | INFO     | number of running child processes to parent process 1650689: 1
[2026-02-17 01:41:21] 2026-02-16 23:40:30,973 | INFO     | maximum number of monitored processes: 6
[2026-02-17 01:41:21] 2026-02-16 23:40:32,614 | INFO     | time since job start (3381s) is within the limit (349056.0s)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,306 | INFO     | job 7011143243 has state=finished
[2026-02-17 01:41:21] 2026-02-16 23:40:33,306 | INFO     | preparing for final server update for job 7011143243 in state='finished'
[2026-02-17 01:41:21] 2026-02-16 23:40:33,307 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7011143243/jobReport.json
[2026-02-17 01:41:21] 2026-02-16 23:40:33,308 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-02-17 01:41:21] 2026-02-16 23:40:33,308 | INFO     | this job has now completed (state=finished)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,308 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,308 | INFO     | log transfer has been attempted: DONE
[2026-02-17 01:41:21] 2026-02-16 23:40:33,308 | INFO     | job 7011143243 has finished - writing final server update
[2026-02-17 01:41:21] 2026-02-16 23:40:33,308 | INFO     | total number of processed events: 400 (read)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,310 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7011143243/memory_monitor_summary.json (trf name=prmon)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,310 | INFO     | extracted standard info from prmon json
[2026-02-17 01:41:21] 2026-02-16 23:40:33,310 | INFO     | extracted standard memory fields from prmon json
[2026-02-17 01:41:21] 2026-02-16 23:40:33,310 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-17 01:41:21] 2026-02-16 23:40:33,310 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-17 01:41:21] 2026-02-16 23:40:33,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | fitting pss+swap vs Time
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | sum of square deviations: 36465800.0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | sum of deviations: -6554735663.0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | mean x: 1771283636.0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | mean y: 2496186.5306122447
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | intersect: 318391123837.0281
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | chi2: 0.09849887155190672
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | current memory leak: -179.75 B/s (using 49 data points, chi2=0.10)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | could have reported an average CPU frequency of 3291 MHz (5 samples)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | ..............................
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . Timing measurements:
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . get job = 0 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . initial setup = 3 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . payload setup = 2 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . stage-in = 0 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . payload execution = 3361 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . stage-out = 0 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | . log creation = 0 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,311 | INFO     | ..............................
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | 
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | job summary report
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | --------------------------------------------------
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | PanDA job id: 7011143243
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | task id: 48442098
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | errors: (none)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | pilot state: finished 
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | transexitcode: 0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | exeerrorcode: 0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | exeerrordiag: 
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | exitcode: 0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | exitmsg: OK
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | cpuconsumptiontime: 12758 s
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | nevents: 400
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | neventsw: 0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | pid: 1650689
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | pgrp: 1650689
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | corecount: 4
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | event service: False
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | sizes: {0: 2282224, 11: 2282224, 3368: 2307948, 3369: 2317002, 3371: 2317172}
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | --------------------------------------------------
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | 
[2026-02-17 01:41:21] 2026-02-16 23:40:33,337 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,346 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-17 01:41:21] 2026-02-16 23:40:33,347 | INFO     | job 7011143243 has completed (purged errors)
[2026-02-17 01:41:21] 2026-02-16 23:40:33,347 | INFO     | overall cleanup function is called
[2026-02-17 01:41:21] 2026-02-16 23:40:34,353 | INFO     | --- collectZombieJob: --- 10, [1650689]
[2026-02-17 01:41:21] 2026-02-16 23:40:34,353 | INFO     | zombie collector waiting for pid 1650689
[2026-02-17 01:41:21] 2026-02-16 23:40:34,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-17 01:41:21] 2026-02-16 23:40:34,353 | INFO     | collected zombie processes
[2026-02-17 01:41:21] 2026-02-16 23:40:34,353 | INFO     | will attempt to kill all subprocesses of pid=1650689
[2026-02-17 01:41:21] 2026-02-16 23:40:34,437 | INFO     | process IDs to be killed: [1650689] (in reverse order)
[2026-02-17 01:41:21] 2026-02-16 23:40:34,467 | WARNING  | found no corresponding commands to process id(s)
[2026-02-17 01:41:21] 2026-02-16 23:40:34,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-17 01:41:21] 2026-02-16 23:40:34,469 | INFO     | did not find any defunct processes belonging to 1650689
[2026-02-17 01:41:21] 2026-02-16 23:40:34,471 | INFO     | did not find any defunct processes belonging to 1650689
[2026-02-17 01:41:21] 2026-02-16 23:40:34,471 | INFO     | ready for new job
[2026-02-17 01:41:21] 2026-02-16 23:40:34,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-17 01:41:21] 2026-02-16 23:40:34,472 | INFO     | **************************************
[2026-02-17 01:41:21] 2026-02-16 23:40:34,472 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-17 01:41:21] 2026-02-16 23:40:34,472 | INFO     | **************************************
[2026-02-17 01:41:21] 2026-02-16 23:40:34,472 | INFO     | 
[2026-02-17 01:41:21] 2026-02-16 23:40:34,473 | INFO     | architecture information:
[2026-02-17 01:41:21] 2026-02-16 23:40:34,473 | INFO     | executing command: cat /etc/os-release
[2026-02-17 01:41:21] 2026-02-16 23:40:34,479 | INFO     | cat /etc/os-release:
[2026-02-17 01:41:21] NAME="CentOS Linux"
[2026-02-17 01:41:21] VERSION="7 (Core)"
[2026-02-17 01:41:21] ID="centos"
[2026-02-17 01:41:21] ID_LIKE="rhel fedora"
[2026-02-17 01:41:21] VERSION_ID="7"
[2026-02-17 01:41:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-17 01:41:21] ANSI_COLOR="0;31"
[2026-02-17 01:41:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-17 01:41:21] HOME_URL="https://www.centos.org/"
[2026-02-17 01:41:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-17 01:41:21] 
[2026-02-17 01:41:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-17 01:41:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-17 01:41:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-17 01:41:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-17 01:41:21] 
[2026-02-17 01:41:21] 2026-02-16 23:40:34,479 | INFO     | **************************************
[2026-02-17 01:41:21] 2026-02-16 23:40:34,981 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | INFO     | sufficient remaining disk space (56285462528 B)
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | INFO     | current server update state: UPDATING_FINAL
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | INFO     | update_server=False
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-17 01:41:21] 2026-02-16 23:40:34,988 | INFO     | aborting loop
[2026-02-17 01:41:21] 2026-02-16 23:40:35,579 | INFO     | all data control threads have been joined
[2026-02-17 01:41:21] 2026-02-16 23:40:35,590 | INFO     | all job control threads have been joined
[2026-02-17 01:41:21] 2026-02-16 23:40:35,658 | INFO     | all payload control threads have been joined
[2026-02-17 01:41:21] 2026-02-16 23:40:35,993 | INFO     | [job] queue monitor thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:35,993 | INFO     | [job] retrieve thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:35,994 | INFO     | [job] job monitor thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:36,092 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:36,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-17 01:41:21] 2026-02-16 23:40:36,584 | INFO     | [data] control thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:36,595 | INFO     | [job] control thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:36,663 | INFO     | [payload] control thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:36,947 | INFO     | [payload] failed_post thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:36,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-17 01:41:21] 2026-02-16 23:40:36,993 | INFO     | [payload] execute_payloads thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:37,144 | INFO     | [job] validate thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:37,191 | INFO     | [job] create_data_payload thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:37,217 | INFO     | [payload] validate_pre thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:37,438 | INFO     | [data] copytool_in thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:37,529 | INFO     | [payload] validate_post thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:38,430 | INFO     | [data] copytool_out thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:40:40,955 | INFO     | [data] queue_monitor thread has finished
[2026-02-17 01:41:21] 2026-02-16 23:41:05,772 | INFO     | PID=1646082 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-17 01:41:21] 2026-02-16 23:41:05,772 | INFO     | found 0 job(s) in 20 queues
[2026-02-17 01:41:21] 2026-02-16 23:41:05,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-17 01:41:21] 2026-02-16 23:41:05,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-17 01:41:21] 2026-02-16 23:41:14,496 | INFO     | [monitor] cgroup control has ended
[2026-02-17 01:41:21] 2026-02-16 23:41:16,458 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446834419520)>', '<ExcThread(monitor, started 140446344922880)>']
[2026-02-17 01:41:21] 2026-02-16 23:41:16,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-17 01:41:21] 2026-02-16 23:41:16,816 | INFO     | [monitor] control thread has ended
[2026-02-17 01:41:21] 2026-02-16 23:41:21,478 | INFO     | all workflow threads have been joined
[2026-02-17 01:41:21] 2026-02-16 23:41:21,478 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-17 01:41:21] 2026-02-16 23:41:21,478 | INFO     | traces error code: 0
[2026-02-17 01:41:21] 2026-02-16 23:41:21,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-17 01:41:21] 2026-02-16 23:41:21,525 [wrapper] ==== pilot stdout END ====
[2026-02-17 01:41:21] 2026-02-16 23:41:21,527 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-17 01:41:21] 2026-02-16 23:41:21,529 [wrapper] pilotpid: 1646082
[2026-02-17 01:41:21] 2026-02-16 23:41:21,530 [wrapper] Pilot exit status: 0
[2026-02-17 01:41:21] 2026-02-16 23:41:21,535 [wrapper] pandaids: 7011143243
[2026-02-17 01:41:21] 2026-02-16 23:41:21,556 [wrapper] cleanup supervisor_pilot 1689635 1646083
[2026-02-17 01:41:21] 2026-02-16 23:41:21,557 [wrapper] Test setup, not cleaning
[2026-02-17 01:41:21] 2026-02-16 23:41:21,559 [wrapper] apfmon messages muted
[2026-02-17 01:41:21] 2026-02-16 23:41:21,560 [wrapper] ==== wrapper stdout END ====
[2026-02-17 01:41:21] 2026-02-16 23:41:21,561 [wrapper] ==== wrapper stderr END ====
[2026-02-17 01:41:21]  *** Error codes and diagnostics ***
[2026-02-17 01:41:21]     "exeErrorCode": 0,
[2026-02-17 01:41:21]     "exeErrorDiag": "",
[2026-02-17 01:41:21]     "pilotErrorCode": 0,
[2026-02-17 01:41:21]     "pilotErrorDiag": "",
[2026-02-17 01:41:21]  *** Listing of results directory ***
[2026-02-17 01:41:21] total 675712
[2026-02-17 01:41:21] -rw-r--r-- 1 ek ek    602657 Feb  3 13:11 pilot3.tar.gz
[2026-02-17 01:41:21] -rwx------ 1 ek ek     36322 Feb 15 07:06 runpilot2-wrapper.sh
[2026-02-17 01:41:21] -rw-r--r-- 1 ek ek      5111 Feb 15 07:06 queuedata.json
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek       100 Feb 17 00:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-17 01:41:21] -rwxr-xr-x 1 ek ek      7986 Feb 17 00:44 run_atlas
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek       105 Feb 17 00:44 job.xml
[2026-02-17 01:41:21] -rw-r--r-- 2 ek ek 504387602 Feb 17 00:44 EVNT.48442096._000180.pool.root.1
[2026-02-17 01:41:21] -rw-r--r-- 2 ek ek    616306 Feb 17 00:44 input.tar.gz
[2026-02-17 01:41:21] -rw-r--r-- 2 ek ek     15845 Feb 17 00:44 start_atlas.sh
[2026-02-17 01:41:21] drwxrwx--x 2 ek ek      4096 Feb 17 00:44 shared
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek         0 Feb 17 00:44 boinc_setup_complete
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek      9840 Feb 17 00:44 init_data.xml
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek         0 Feb 17 00:44 boinc_lockfile
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek      2529 Feb 17 00:44 pandaJob.out
[2026-02-17 01:41:21] -rw------- 1 ek ek        50 Feb 17 00:44 setup.sh.local
[2026-02-17 01:41:21] -rw------- 1 ek ek   1001145 Feb 17 00:44 agis_schedconf.cvmfs.json
[2026-02-17 01:41:21] -rw------- 1 ek ek   1513015 Feb 17 00:44 agis_ddmendpoints.agis.ALL.json
[2026-02-17 01:41:21] -rw------- 1 ek ek       433 Feb 17 00:44 workernode_map.json
[2026-02-17 01:41:21] drwx------ 7 ek ek      4096 Feb 17 00:44 pilot3
[2026-02-17 01:41:21] -rw------- 1 ek ek 181960987 Feb 17 01:40 HITS.48442098._009847.pool.root.1
[2026-02-17 01:41:21] -rw------- 1 ek ek      1034 Feb 17 01:40 memory_monitor_summary.json
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek       530 Feb 17 01:40 boinc_task_state.xml
[2026-02-17 01:41:21] -rw------- 1 ek ek    285658 Feb 17 01:40 log.48442098._009847.job.log.tgz.1
[2026-02-17 01:41:21] -rw------- 1 ek ek      6345 Feb 17 01:40 heartbeat.json
[2026-02-17 01:41:21] -rw------- 1 ek ek        95 Feb 17 01:40 pilot_heartbeat.json
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek        27 Feb 17 01:40 wrapper_checkpoint.txt
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek      8192 Feb 17 01:40 boinc_mmap_file
[2026-02-17 01:41:21] -rw------- 1 ek ek      4744 Feb 17 01:41 pilotlog.txt
[2026-02-17 01:41:21] -rw------- 1 ek ek    511576 Feb 17 01:41 log.48442098._009847.job.log.1
[2026-02-17 01:41:21] -rw------- 1 ek ek       357 Feb 17 01:41 output.list
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek       620 Feb 17 01:41 runtime_log
[2026-02-17 01:41:21] -rw------- 1 ek ek    819200 Feb 17 01:41 result.tar.gz
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek      9501 Feb 17 01:41 runtime_log.err
[2026-02-17 01:41:21] -rw------- 1 ek ek       665 Feb 17 01:41 aghLDmFWjB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmt4nKDmi4r7Lm.diag
[2026-02-17 01:41:21] -rw-rw-r-- 1 ek ek     20847 Feb 17 01:41 stderr.txt
[2026-02-17 01:41:21] HITS file was successfully produced:
[2026-02-17 01:41:21] -rw------- 1 ek ek 181960987 Feb 17 01:40 shared/HITS.pool.root.1
[2026-02-17 01:41:21]  *** Contents of shared directory: ***
[2026-02-17 01:41:21] total 671696
[2026-02-17 01:41:21] -rw-r--r-- 2 ek ek 504387602 Feb 17 00:44 ATLAS.root_0
[2026-02-17 01:41:21] -rw-r--r-- 2 ek ek    616306 Feb 17 00:44 input.tar.gz
[2026-02-17 01:41:21] -rw-r--r-- 2 ek ek     15845 Feb 17 00:44 start_atlas.sh
[2026-02-17 01:41:21] -rw------- 1 ek ek 181960987 Feb 17 01:40 HITS.pool.root.1
[2026-02-17 01:41:21] -rw------- 1 ek ek    819200 Feb 17 01:41 result.tar.gz
01:41:23 (1642240): run_atlas exited; CPU time 12784.329542
01:41:23 (1642240): called boinc_finish(0)

</stderr_txt>
]]>

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