Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
08:55:47 (599238): wrapper (7.7.26015): starting
08:55:47 (599238): wrapper: running run_atlas (--nthreads 2)
[2026-02-15 08:55:47] Arguments: --nthreads 2
[2026-02-15 08:55:47] Threads: 2
[2026-02-15 08:55:47] Checking for CVMFS
[2026-02-15 08:55:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 08:55:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 08:55:49] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 08:55:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 08:55:49] 2.13.1.0 367989 555 51624 156261 1 188 3572755 4096001 922 130560 0 599998 99.138 482490 865 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-15 08:55:49] CVMFS is ok
[2026-02-15 08:55:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 08:55:49] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-15 08:55:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-15 08:55:49] Further information can be found at the LHC@home message board.
[2026-02-15 08:55:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 08:55:49] Checking for apptainer binary...
[2026-02-15 08:55:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 08:55:49] Running /usr/bin/apptainer --version
[2026-02-15 08:55:49] apptainer version 1.2.3
[2026-02-15 08:55:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 08:55:49] Ryzen-7-7700-Zen4-Deb12
[2026-02-15 08:55:49] apptainer works
[2026-02-15 08:55:49] Set ATHENA_PROC_NUMBER=2
[2026-02-15 08:55:49] Set ATHENA_CORE_NUMBER=2
[2026-02-15 08:55:49] Starting ATLAS job with PandaID=7010781750
[2026-02-15 08:55:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 10:54:22]  *** The last 200 lines of the pilot log: ***
[2026-02-15 10:54:23] 2026-02-15 09:53:50,264 | INFO     | log transfer has been attempted: DONE
[2026-02-15 10:54:23] 2026-02-15 09:53:50,264 | INFO     | job 7010781750 has finished - writing final server update
[2026-02-15 10:54:23] 2026-02-15 09:53:50,265 | INFO     | total number of processed events: 400 (read)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,266 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7010781750/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,266 | INFO     | extracted standard info from prmon json
[2026-02-15 10:54:23] 2026-02-15 09:53:50,266 | INFO     | extracted standard memory fields from prmon json
[2026-02-15 10:54:23] 2026-02-15 09:53:50,266 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-15 10:54:23] 2026-02-15 09:53:50,266 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-15 10:54:23] 2026-02-15 09:53:50,266 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | fitting pss+swap vs Time
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | sum of square deviations: 483971865.0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | sum of deviations: 6498621183.500001
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | mean x: 1771145693.5
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | mean y: 2229253.8017241377
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | intersect: -23780155126.835567
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | chi2: 1.093259640821388
[2026-02-15 10:54:23] 2026-02-15 09:53:50,267 | INFO     | sum of square deviations: 424045160.0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | sum of deviations: 6114877168.000002
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | mean x: 1771145541.0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | mean y: 2228279.414414414
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | intersect: -25538300068.71226
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | chi2: 1.0947286759574426
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | current chi2=1.0947286759574426 (change=-0.13437202666248244 %)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | right removable region: 110
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | sum of square deviations: 424045160.0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | sum of deviations: -2568705059.0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | mean x: 1771145846.0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | mean y: 2251544.3603603602
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | intersect: 10731182620.585909
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | chi2: 0.012506374418931277
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | current chi2=0.012506374418931277 (change=98.85604718660107 %)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | sum of square deviations: 369281342.5
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | sum of deviations: -1373496801.0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | mean x: 1771145998.5
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | mean y: 2248208.566037736
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | intersect: 6589809190.051857
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | chi2: 0.009484822542830153
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | current chi2=0.009484822542830153 (change=24.16009448371632 %)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | left removable region: 20
[2026-02-15 10:54:23] 2026-02-15 09:53:50,268 | INFO     | sum of square deviations: 226022842.5
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | sum of deviations: 234361359.5
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | mean x: 1771146120.5
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | mean y: 2242311.9444444445
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | intersect: -1834245576.1039982
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | chi2: 0.00012716948585097184
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | current memory leak: 1.04 B/s (using 90 data points, chi2=0.00)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | could have reported an average CPU frequency of 4837 MHz (7 samples)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | ..............................
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . Timing measurements:
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . get job = 0 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . initial setup = 3 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . payload setup = 9 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . stage-in = 0 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . payload execution = 7049 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . stage-out = 0 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | . log creation = 0 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,269 | INFO     | ..............................
[2026-02-15 10:54:23] 2026-02-15 09:53:50,303 | INFO     | 
[2026-02-15 10:54:23] 2026-02-15 09:53:50,303 | INFO     | job summary report
[2026-02-15 10:54:23] 2026-02-15 09:53:50,303 | INFO     | --------------------------------------------------
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | PanDA job id: 7010781750
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | task id: 48442098
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | errors: (none)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | pilot state: finished 
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | transexitcode: 0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | exeerrorcode: 0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | exeerrordiag: 
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | exitcode: 0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | exitmsg: OK
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | cpuconsumptiontime: 13872 s
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | nevents: 400
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | neventsw: 0
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | pid: 624680
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | pgrp: 624680
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | corecount: 2
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | event service: False
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | sizes: {0: 2281797, 1: 2282258, 11: 2282258, 7058: 2309559, 7059: 2309558, 7060: 2318626, 7061: 2319004}
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | --------------------------------------------------
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | 
[2026-02-15 10:54:23] 2026-02-15 09:53:50,304 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-02-15 10:54:23] 2026-02-15 09:53:50,332 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | job 7010781750 has completed (purged errors)
[2026-02-15 10:54:23] 2026-02-15 09:53:50,333 | INFO     | overall cleanup function is called
[2026-02-15 10:54:23] 2026-02-15 09:53:50,691 | INFO     | PID=610854 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-15 10:54:23] 2026-02-15 09:53:50,691 | INFO     | .. there are 3 such processes running
[2026-02-15 10:54:23] 2026-02-15 09:53:51,003 | WARNING  | process 624680 can no longer be monitored (due to stat problems) - aborting
[2026-02-15 10:54:23] 2026-02-15 09:53:51,019 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 10:54:23] 2026-02-15 09:53:51,042 | INFO     | number of running child processes to parent process 624680: 1
[2026-02-15 10:54:23] 2026-02-15 09:53:51,042 | INFO     | maximum number of monitored processes: 6
[2026-02-15 10:54:23] 2026-02-15 09:53:51,042 | INFO     | aborting job monitoring since job object (job id=7010781750) has expired
[2026-02-15 10:54:23] 2026-02-15 09:53:51,339 | INFO     | --- collectZombieJob: --- 10, [624680]
[2026-02-15 10:54:23] 2026-02-15 09:53:51,339 | INFO     | zombie collector waiting for pid 624680
[2026-02-15 10:54:23] 2026-02-15 09:53:51,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 10:54:23] 2026-02-15 09:53:51,339 | INFO     | collected zombie processes
[2026-02-15 10:54:23] 2026-02-15 09:53:51,339 | INFO     | will attempt to kill all subprocesses of pid=624680
[2026-02-15 10:54:23] 2026-02-15 09:53:51,371 | INFO     | process IDs to be killed: [624680] (in reverse order)
[2026-02-15 10:54:23] 2026-02-15 09:53:51,454 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 10:54:23] 2026-02-15 09:53:51,454 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 10:54:23] 2026-02-15 09:53:51,455 | INFO     | did not find any defunct processes belonging to 624680
[2026-02-15 10:54:23] 2026-02-15 09:53:51,456 | INFO     | did not find any defunct processes belonging to 624680
[2026-02-15 10:54:23] 2026-02-15 09:53:51,456 | INFO     | ready for new job
[2026-02-15 10:54:23] 2026-02-15 09:53:51,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 10:54:23] 2026-02-15 09:53:51,457 | INFO     | **************************************
[2026-02-15 10:54:23] 2026-02-15 09:53:51,457 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 10:54:23] 2026-02-15 09:53:51,457 | INFO     | **************************************
[2026-02-15 10:54:23] 2026-02-15 09:53:51,457 | INFO     | 
[2026-02-15 10:54:23] 2026-02-15 09:53:51,458 | INFO     | architecture information:
[2026-02-15 10:54:23] 2026-02-15 09:53:51,458 | INFO     | executing command: cat /etc/os-release
[2026-02-15 10:54:23] 2026-02-15 09:53:51,480 | INFO     | cat /etc/os-release:
[2026-02-15 10:54:23] NAME="CentOS Linux"
[2026-02-15 10:54:23] VERSION="7 (Core)"
[2026-02-15 10:54:23] ID="centos"
[2026-02-15 10:54:23] ID_LIKE="rhel fedora"
[2026-02-15 10:54:23] VERSION_ID="7"
[2026-02-15 10:54:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 10:54:23] ANSI_COLOR="0;31"
[2026-02-15 10:54:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 10:54:23] HOME_URL="https://www.centos.org/"
[2026-02-15 10:54:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 10:54:23] 
[2026-02-15 10:54:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 10:54:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 10:54:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 10:54:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 10:54:23] 
[2026-02-15 10:54:23] 2026-02-15 09:53:51,480 | INFO     | **************************************
[2026-02-15 10:54:23] 2026-02-15 09:53:51,983 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | INFO     | sufficient remaining disk space (877678034944 B)
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | INFO     | update_server=False
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 10:54:23] 2026-02-15 09:53:52,008 | INFO     | will abort loop
[2026-02-15 10:54:23] 2026-02-15 09:53:52,092 | INFO     | all data control threads have been joined
[2026-02-15 10:54:23] 2026-02-15 09:53:52,107 | INFO     | all job control threads have been joined
[2026-02-15 10:54:23] 2026-02-15 09:53:52,566 | INFO     | all payload control threads have been joined
[2026-02-15 10:54:23] 2026-02-15 09:53:52,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 10:54:23] 2026-02-15 09:53:52,759 | INFO     | job.realtimelogging is not enabled
[2026-02-15 10:54:23] 2026-02-15 09:53:53,011 | INFO     | [job] retrieve thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,011 | INFO     | [job] job monitor thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,011 | INFO     | [job] queue monitor thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,095 | INFO     | [data] control thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,111 | INFO     | [job] control thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,227 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,571 | INFO     | [payload] validate_post thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,571 | INFO     | [payload] control thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,847 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,911 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,915 | INFO     | [job] validate thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:53,959 | INFO     | [data] copytool_in thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:54,039 | INFO     | [payload] failed_post thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:54,611 | INFO     | [data] copytool_out thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:53:56,011 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 10:54:23] 2026-02-15 09:54:09,847 | INFO     | [monitor] cgroup control has ended
[2026-02-15 10:54:23] 2026-02-15 09:54:11,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140613905438528)>', '<ExcThread(monitor, started 140613555033856)>']
[2026-02-15 10:54:23] 2026-02-15 09:54:16,547 | INFO     | all workflow threads have been joined
[2026-02-15 10:54:23] 2026-02-15 09:54:16,547 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 10:54:23] 2026-02-15 09:54:16,547 | INFO     | traces error code: 0
[2026-02-15 10:54:23] 2026-02-15 09:54:16,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 10:54:23] 2026-02-15 09:54:22,735 | INFO     | PID=610854 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-15 10:54:23] 2026-02-15 09:54:22,735 | INFO     | .. there are 3 such processes running
[2026-02-15 10:54:23] 2026-02-15 09:54:22,735 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 10:54:23] 2026-02-15 09:54:22,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 10:54:23] 2026-02-15 09:54:22,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 10:54:23] 2026-02-15 09:54:22,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 10:54:23] 2026-02-15 09:54:22,735 | INFO     | [monitor] control thread has ended
[2026-02-15 10:54:23] 2026-02-15 09:54:22,805 [wrapper] ==== pilot stdout END ====
[2026-02-15 10:54:23] 2026-02-15 09:54:22,811 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 10:54:23] 2026-02-15 09:54:22,819 [wrapper] pilotpid: 610854
[2026-02-15 10:54:23] 2026-02-15 09:54:22,827 [wrapper] Pilot exit status: 0
[2026-02-15 10:54:23] 2026-02-15 09:54:22,843 [wrapper] pandaids: 7010781750
[2026-02-15 10:54:23] 2026-02-15 09:54:22,861 [wrapper] cleanup supervisor_pilot  650074 610855
[2026-02-15 10:54:23] 2026-02-15 09:54:22,865 [wrapper] Test setup, not cleaning
[2026-02-15 10:54:23] 2026-02-15 09:54:22,866 [wrapper] apfmon messages muted
[2026-02-15 10:54:23] 2026-02-15 09:54:22,875 [wrapper] ==== wrapper stdout END ====
[2026-02-15 10:54:23] 2026-02-15 09:54:22,879 [wrapper] ==== wrapper stderr END ====
[2026-02-15 10:54:23]  *** Error codes and diagnostics ***
[2026-02-15 10:54:23]     "exeErrorCode": 0,
[2026-02-15 10:54:23]     "exeErrorDiag": "",
[2026-02-15 10:54:23]     "pilotErrorCode": 0,
[2026-02-15 10:54:23]     "pilotErrorDiag": "",
[2026-02-15 10:54:23]  *** Listing of results directory ***
[2026-02-15 10:54:23] total 672288
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc    584627 Feb 15 04:23 pilot3.tar.gz
[2026-02-15 10:54:23] -rwx------ 1 boinc boinc     36322 Feb 15 04:27 runpilot2-wrapper.sh
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc      5111 Feb 15 04:30 queuedata.json
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc       100 Feb 15 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 10:54:23] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 08:55 run_atlas
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc       105 Feb 15 08:55 job.xml
[2026-02-15 10:54:23] -rw-r--r-- 2 boinc boinc     15845 Feb 15 08:55 start_atlas.sh
[2026-02-15 10:54:23] drwxrwx--x 2 boinc boinc      4096 Feb 15 08:55 shared
[2026-02-15 10:54:23] -rw-r--r-- 2 boinc boinc    597954 Feb 15 08:55 input.tar.gz
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc      6774 Feb 15 08:55 init_data.xml
[2026-02-15 10:54:23] -rw-r--r-- 2 boinc boinc 504166251 Feb 15 08:55 EVNT.48442096._000168.pool.root.1
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc         0 Feb 15 08:55 boinc_lockfile
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc      2529 Feb 15 08:55 pandaJob.out
[2026-02-15 10:54:23] -rw------- 1 boinc boinc   1000934 Feb 15 08:55 agis_schedconf.cvmfs.json
[2026-02-15 10:54:23] -rw------- 1 boinc boinc   1513015 Feb 15 08:55 agis_ddmendpoints.agis.ALL.json
[2026-02-15 10:54:23] -rw------- 1 boinc boinc       435 Feb 15 08:55 workernode_map.json
[2026-02-15 10:54:23] drwx------ 5 boinc boinc      4096 Feb 15 08:55 pilot3
[2026-02-15 10:54:23] -rw------- 1 boinc boinc        95 Feb 15 10:53 pilot_heartbeat.json
[2026-02-15 10:54:23] -rw------- 1 boinc boinc 177695718 Feb 15 10:53 HITS.48442098._009208.pool.root.1
[2026-02-15 10:54:23] -rw------- 1 boinc boinc      1017 Feb 15 10:53 memory_monitor_summary.json
[2026-02-15 10:54:23] -rw------- 1 boinc boinc    272155 Feb 15 10:53 log.48442098._009208.job.log.tgz.1
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc       529 Feb 15 10:53 boinc_task_state.xml
[2026-02-15 10:54:23] -rw------- 1 boinc boinc      6309 Feb 15 10:53 heartbeat.json
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc        26 Feb 15 10:54 wrapper_checkpoint.txt
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc      8192 Feb 15 10:54 boinc_mmap_file
[2026-02-15 10:54:23] -rw------- 1 boinc boinc       821 Feb 15 10:54 pilotlog.txt
[2026-02-15 10:54:23] -rw------- 1 boinc boinc   1046290 Feb 15 10:54 log.48442098._009208.job.log.1
[2026-02-15 10:54:23] -rw------- 1 boinc boinc       357 Feb 15 10:54 output.list
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc       620 Feb 15 10:54 runtime_log
[2026-02-15 10:54:23] -rw------- 1 boinc boinc   1331200 Feb 15 10:54 result.tar.gz
[2026-02-15 10:54:23] -rw------- 1 boinc boinc       655 Feb 15 10:54 SLpNDmxxhB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmLxnKDmvp01Cn.diag
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc      8953 Feb 15 10:54 runtime_log.err
[2026-02-15 10:54:23] -rw-r--r-- 1 boinc boinc     21395 Feb 15 10:54 stderr.txt
[2026-02-15 10:54:23] HITS file was successfully produced:
[2026-02-15 10:54:23] -rw------- 1 boinc boinc 177695718 Feb 15 10:53 shared/HITS.pool.root.1
[2026-02-15 10:54:23]  *** Contents of shared directory: ***
[2026-02-15 10:54:23] total 667792
[2026-02-15 10:54:23] -rw-r--r-- 2 boinc boinc     15845 Feb 15 08:55 start_atlas.sh
[2026-02-15 10:54:23] -rw-r--r-- 2 boinc boinc    597954 Feb 15 08:55 input.tar.gz
[2026-02-15 10:54:23] -rw-r--r-- 2 boinc boinc 504166251 Feb 15 08:55 ATLAS.root_0
[2026-02-15 10:54:23] -rw------- 1 boinc boinc 177695718 Feb 15 10:53 HITS.pool.root.1
[2026-02-15 10:54:23] -rw------- 1 boinc boinc   1331200 Feb 15 10:54 result.tar.gz
10:54:24 (599238): run_atlas exited; CPU time 13897.413947
10:54:24 (599238): called boinc_finish(0)

</stderr_txt>
]]>

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