Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:56:49 (1605739): wrapper (7.7.26015): starting
16:56:49 (1605739): wrapper: running run_atlas (--nthreads 4)
[2026-02-15 16:56:49] Arguments: --nthreads 4
[2026-02-15 16:56:49] Threads: 4
[2026-02-15 16:56:49] Checking for CVMFS
[2026-02-15 16:56:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 16:56:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 16:56:50] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 16:56:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 16:56:50] 2.9.2.0 1407057 1010 81344 156267 3 188 25377912 36864000 0 130560 0 556758 99.989 30077 16257 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 16:56:50] CVMFS is ok
[2026-02-15 16:56:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 16:56:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 16:56:50] Further information can be found at the LHC@home message board.
[2026-02-15 16:56:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 16:56:50] Checking for apptainer binary...
[2026-02-15 16:56:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 16:56:50] Running /usr/bin/apptainer --version
[2026-02-15 16:56:50] apptainer version 1.4.1-1.1
[2026-02-15 16:56:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 16:56:50] magicA244a
[2026-02-15 16:56:50] apptainer works
[2026-02-15 16:56:50] Set ATHENA_PROC_NUMBER=4
[2026-02-15 16:56:50] Set ATHENA_CORE_NUMBER=4
[2026-02-15 16:56:50] Starting ATLAS job with PandaID=7010913672
[2026-02-15 16:56:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 17:57:28]  *** The last 200 lines of the pilot log: ***
[2026-02-15 17:57:28] 2026-02-15 16:56:56,367 | INFO     | job 7010913672 has completed (purged errors)
[2026-02-15 17:57:28] 2026-02-15 16:56:56,367 | INFO     | overall cleanup function is called
[2026-02-15 17:57:28] 2026-02-15 16:56:56,487 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-02-15 17:57:28] 2026-02-15 16:56:56,634 | WARNING  | process 1614351 can no longer be monitored (due to stat problems) - aborting
[2026-02-15 17:57:28] 2026-02-15 16:56:56,664 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-15 17:57:28] 2026-02-15 16:56:56,701 | INFO     | number of running child processes to parent process 1614351: 1
[2026-02-15 17:57:28] 2026-02-15 16:56:56,701 | INFO     | maximum number of monitored processes: 6
[2026-02-15 17:57:28] 2026-02-15 16:56:56,701 | INFO     | aborting job monitoring since job object (job id=7010913672) has expired
[2026-02-15 17:57:28] 2026-02-15 16:56:57,374 | INFO     | --- collectZombieJob: --- 10, [1614351]
[2026-02-15 17:57:28] 2026-02-15 16:56:57,375 | INFO     | zombie collector waiting for pid 1614351
[2026-02-15 17:57:28] 2026-02-15 16:56:57,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 17:57:28] 2026-02-15 16:56:57,375 | INFO     | collected zombie processes
[2026-02-15 17:57:28] 2026-02-15 16:56:57,375 | INFO     | will attempt to kill all subprocesses of pid=1614351
[2026-02-15 17:57:28] 2026-02-15 16:56:57,416 | INFO     | process IDs to be killed: [1614351] (in reverse order)
[2026-02-15 17:57:28] 2026-02-15 16:56:57,443 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 17:57:28] 2026-02-15 16:56:57,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 17:57:28] 2026-02-15 16:56:57,445 | INFO     | did not find any defunct processes belonging to 1614351
[2026-02-15 17:57:28] 2026-02-15 16:56:57,446 | INFO     | did not find any defunct processes belonging to 1614351
[2026-02-15 17:57:28] 2026-02-15 16:56:57,446 | INFO     | ready for new job
[2026-02-15 17:57:28] 2026-02-15 16:56:57,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 17:57:28] 2026-02-15 16:56:57,447 | INFO     | **************************************
[2026-02-15 17:57:28] 2026-02-15 16:56:57,447 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 17:57:28] 2026-02-15 16:56:57,447 | INFO     | **************************************
[2026-02-15 17:57:28] 2026-02-15 16:56:57,447 | INFO     | 
[2026-02-15 17:57:28] 2026-02-15 16:56:57,447 | INFO     | architecture information:
[2026-02-15 17:57:28] 2026-02-15 16:56:57,447 | INFO     | executing command: cat /etc/os-release
[2026-02-15 17:57:28] 2026-02-15 16:56:57,457 | INFO     | cat /etc/os-release:
[2026-02-15 17:57:28] NAME="CentOS Linux"
[2026-02-15 17:57:28] VERSION="7 (Core)"
[2026-02-15 17:57:28] ID="centos"
[2026-02-15 17:57:28] ID_LIKE="rhel fedora"
[2026-02-15 17:57:28] VERSION_ID="7"
[2026-02-15 17:57:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 17:57:28] ANSI_COLOR="0;31"
[2026-02-15 17:57:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 17:57:28] HOME_URL="https://www.centos.org/"
[2026-02-15 17:57:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 17:57:28] 
[2026-02-15 17:57:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 17:57:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 17:57:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 17:57:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 17:57:28] 
[2026-02-15 17:57:28] 2026-02-15 16:56:57,457 | INFO     | **************************************
[2026-02-15 17:57:28] 2026-02-15 16:56:57,958 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 17:57:28] 2026-02-15 16:56:57,972 | INFO     | sufficient remaining disk space (330087530496 B)
[2026-02-15 17:57:28] 2026-02-15 16:56:57,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 17:57:28] 2026-02-15 16:56:57,972 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 17:57:28] 2026-02-15 16:56:57,972 | INFO     | update_server=False
[2026-02-15 17:57:28] 2026-02-15 16:56:57,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 17:57:28] 2026-02-15 16:56:57,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 17:57:28] 2026-02-15 16:56:57,972 | INFO     | aborting loop
[2026-02-15 17:57:28] 2026-02-15 16:56:57,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 17:57:28] 2026-02-15 16:56:58,412 | INFO     | all job control threads have been joined
[2026-02-15 17:57:28] 2026-02-15 16:56:58,507 | INFO     | all data control threads have been joined
[2026-02-15 17:57:28] 2026-02-15 16:56:58,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 17:57:28] 2026-02-15 16:56:58,978 | INFO     | [job] job monitor thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:56:58,978 | INFO     | [job] retrieve thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:56:58,983 | INFO     | [payload] validate_post thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:56:59,014 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:56:59,116 | INFO     | [data] copytool_in thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:56:59,154 | INFO     | all payload control threads have been joined
[2026-02-15 17:57:28] 2026-02-15 16:56:59,418 | INFO     | [job] control thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:56:59,513 | INFO     | [data] control thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:56:59,702 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:00,064 | INFO     | [payload] failed_post thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:00,160 | INFO     | [payload] control thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:00,381 | INFO     | [job] validate thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:00,452 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:00,765 | INFO     | [data] copytool_out thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:00,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 17:57:28] 2026-02-15 16:57:01,040 | INFO     | job.realtimelogging is not enabled
[2026-02-15 17:57:28] 2026-02-15 16:57:01,966 | INFO     | [job] queue monitor thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:01,976 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:02,045 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 17:57:28] 2026-02-15 16:57:04,702 | INFO     | [monitor] cgroup control has ended
[2026-02-15 17:57:28] 2026-02-15 16:57:05,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419297490752)>', '<ExcThread(monitor, started 140418494744320)>']
[2026-02-15 17:57:28] 2026-02-15 16:57:10,690 | INFO     | all workflow threads have been joined
[2026-02-15 17:57:28] 2026-02-15 16:57:10,690 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 17:57:28] 2026-02-15 16:57:10,690 | INFO     | traces error code: 0
[2026-02-15 17:57:28] 2026-02-15 16:57:10,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 17:57:28] 2026-02-15 16:57:28,765 | INFO     | PID=1609848 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-15 17:57:28] 2026-02-15 16:57:28,765 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 17:57:28] 2026-02-15 16:57:28,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 17:57:28] 2026-02-15 16:57:28,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 17:57:28] 2026-02-15 16:57:28,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 17:57:28] 2026-02-15 16:57:28,766 | INFO     | [monitor] control thread has ended
[2026-02-15 17:57:28] 2026-02-15 16:57:28,815 [wrapper] ==== pilot stdout END ====
[2026-02-15 17:57:28] 2026-02-15 16:57:28,818 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 17:57:28] 2026-02-15 16:57:28,820 [wrapper] pilotpid: 1609848
[2026-02-15 17:57:28] 2026-02-15 16:57:28,823 [wrapper] Pilot exit status: 0
[2026-02-15 17:57:28] 2026-02-15 16:57:28,831 [wrapper] pandaids: 7010913672
[2026-02-15 17:57:28] 2026-02-15 16:57:28,849 [wrapper] cleanup supervisor_pilot 1619834 1609849
[2026-02-15 17:57:28] 2026-02-15 16:57:28,852 [wrapper] Test setup, not cleaning
[2026-02-15 17:57:28] 2026-02-15 16:57:28,854 [wrapper] apfmon messages muted
[2026-02-15 17:57:28] 2026-02-15 16:57:28,857 [wrapper] ==== wrapper stdout END ====
[2026-02-15 17:57:28] 2026-02-15 16:57:28,859 [wrapper] ==== wrapper stderr END ====
[2026-02-15 17:57:28]  *** Error codes and diagnostics ***
[2026-02-15 17:57:28]     "exeErrorCode": 0,
[2026-02-15 17:57:28]     "exeErrorDiag": "",
[2026-02-15 17:57:28]     "pilotErrorCode": 0,
[2026-02-15 17:57:28]     "pilotErrorDiag": "",
[2026-02-15 17:57:28]  *** Listing of results directory ***
[2026-02-15 17:57:28] total 668000
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc    584627 Feb 15 04:23 pilot3.tar.gz
[2026-02-15 17:57:28] -rwx------ 1 boinc boinc     36322 Feb 15 04:25 runpilot2-wrapper.sh
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc      5111 Feb 15 04:28 queuedata.json
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc       100 Feb 15 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 17:57:28] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 16:56 run_atlas
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc       105 Feb 15 16:56 job.xml
[2026-02-15 17:57:28] -rw-r--r-- 2 boinc boinc 495525565 Feb 15 16:56 EVNT.48442096._000174.pool.root.1
[2026-02-15 17:57:28] -rw-r--r-- 2 boinc boinc    597956 Feb 15 16:56 input.tar.gz
[2026-02-15 17:57:28] -rw-r--r-- 2 boinc boinc     15845 Feb 15 16:56 start_atlas.sh
[2026-02-15 17:57:28] drwxrwx--x 2 boinc boinc      4096 Feb 15 16:56 shared
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc         0 Feb 15 16:56 boinc_setup_complete
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc      6438 Feb 15 16:56 init_data.xml
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc         0 Feb 15 16:56 boinc_lockfile
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc      2530 Feb 15 16:56 pandaJob.out
[2026-02-15 17:57:28] -rw------- 1 boinc boinc   1000992 Feb 15 16:56 agis_schedconf.cvmfs.json
[2026-02-15 17:57:28] -rw------- 1 boinc boinc   1513015 Feb 15 16:56 agis_ddmendpoints.agis.ALL.json
[2026-02-15 17:57:28] -rw------- 1 boinc boinc       427 Feb 15 16:56 workernode_map.json
[2026-02-15 17:57:28] drwx------ 5 boinc boinc      4096 Feb 15 16:57 pilot3
[2026-02-15 17:57:28] -rw------- 1 boinc boinc 182944891 Feb 15 17:56 HITS.48442098._009542.pool.root.1
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc       530 Feb 15 17:56 boinc_task_state.xml
[2026-02-15 17:57:28] -rw------- 1 boinc boinc      1010 Feb 15 17:56 memory_monitor_summary.json
[2026-02-15 17:57:28] -rw------- 1 boinc boinc    285292 Feb 15 17:56 log.48442098._009542.job.log.tgz.1
[2026-02-15 17:57:28] -rw------- 1 boinc boinc      6300 Feb 15 17:56 heartbeat.json
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc      8192 Feb 15 17:57 boinc_mmap_file
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc        27 Feb 15 17:57 wrapper_checkpoint.txt
[2026-02-15 17:57:28] -rw------- 1 boinc boinc       747 Feb 15 17:57 pilotlog.txt
[2026-02-15 17:57:28] -rw------- 1 boinc boinc        95 Feb 15 17:57 pilot_heartbeat.json
[2026-02-15 17:57:28] -rw------- 1 boinc boinc    540080 Feb 15 17:57 log.48442098._009542.job.log.1
[2026-02-15 17:57:28] -rw------- 1 boinc boinc       357 Feb 15 17:57 output.list
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc       620 Feb 15 17:57 runtime_log
[2026-02-15 17:57:28] -rw------- 1 boinc boinc    839680 Feb 15 17:57 result.tar.gz
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc      8916 Feb 15 17:57 runtime_log.err
[2026-02-15 17:57:28] -rw------- 1 boinc boinc       661 Feb 15 17:57 4saLDmRwhB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2poKDmgrpqOn.diag
[2026-02-15 17:57:28] -rw-r--r-- 1 boinc boinc     11638 Feb 15 17:57 stderr.txt
[2026-02-15 17:57:28] HITS file was successfully produced:
[2026-02-15 17:57:28] -rw------- 1 boinc boinc 182944891 Feb 15 17:56 shared/HITS.pool.root.1
[2026-02-15 17:57:28]  *** Contents of shared directory: ***
[2026-02-15 17:57:28] total 664000
[2026-02-15 17:57:28] -rw-r--r-- 2 boinc boinc 495525565 Feb 15 16:56 ATLAS.root_0
[2026-02-15 17:57:28] -rw-r--r-- 2 boinc boinc    597956 Feb 15 16:56 input.tar.gz
[2026-02-15 17:57:28] -rw-r--r-- 2 boinc boinc     15845 Feb 15 16:56 start_atlas.sh
[2026-02-15 17:57:28] -rw------- 1 boinc boinc 182944891 Feb 15 17:56 HITS.pool.root.1
[2026-02-15 17:57:28] -rw------- 1 boinc boinc    839680 Feb 15 17:57 result.tar.gz
17:57:30 (1605739): run_atlas exited; CPU time 13436.983541
17:57:30 (1605739): called boinc_finish(0)

</stderr_txt>
]]>

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