Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:17:00 (3133123): wrapper (7.7.26015): starting
16:17:00 (3133123): wrapper: running run_atlas (--nthreads 2)
[2026-02-15 16:17:00] Arguments: --nthreads 2
[2026-02-15 16:17:00] Threads: 2
[2026-02-15 16:17:00] Checking for CVMFS
[2026-02-15 16:17:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 16:17:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 16:17:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 16:17:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 16:17:00] 2.9.2.0 3036883 1059 54144 156267 2 188 34593960 36864001 0 130560 0 287113 99.973 35635 17826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 16:17:00] CVMFS is ok
[2026-02-15 16:17:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 16:17:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 16:17:00] Further information can be found at the LHC@home message board.
[2026-02-15 16:17:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 16:17:00] Checking for apptainer binary...
[2026-02-15 16:17:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 16:17:00] Running /usr/bin/apptainer --version
[2026-02-15 16:17:00] apptainer version 1.4.1-1.1
[2026-02-15 16:17:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 16:17:00] atlasA229
[2026-02-15 16:17:00] apptainer works
[2026-02-15 16:17:00] Set ATHENA_PROC_NUMBER=2
[2026-02-15 16:17:00] Set ATHENA_CORE_NUMBER=2
[2026-02-15 16:17:01] Starting ATLAS job with PandaID=7010913808
[2026-02-15 16:17:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 18:17:37]  *** The last 200 lines of the pilot log: ***
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | job 7010913808 has completed (purged errors)
[2026-02-15 18:17:37] 2026-02-15 17:16:53,740 | INFO     | overall cleanup function is called
[2026-02-15 18:17:37] 2026-02-15 17:16:54,746 | INFO     | --- collectZombieJob: --- 10, [3141553]
[2026-02-15 18:17:37] 2026-02-15 17:16:54,747 | INFO     | zombie collector waiting for pid 3141553
[2026-02-15 18:17:37] 2026-02-15 17:16:54,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 18:17:37] 2026-02-15 17:16:54,747 | INFO     | collected zombie processes
[2026-02-15 18:17:37] 2026-02-15 17:16:54,747 | INFO     | will attempt to kill all subprocesses of pid=3141553
[2026-02-15 18:17:37] 2026-02-15 17:16:54,780 | INFO     | process IDs to be killed: [3141553] (in reverse order)
[2026-02-15 18:17:37] 2026-02-15 17:16:54,801 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 18:17:37] 2026-02-15 17:16:54,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 18:17:37] 2026-02-15 17:16:54,802 | INFO     | did not find any defunct processes belonging to 3141553
[2026-02-15 18:17:37] 2026-02-15 17:16:54,803 | INFO     | did not find any defunct processes belonging to 3141553
[2026-02-15 18:17:37] 2026-02-15 17:16:54,803 | INFO     | ready for new job
[2026-02-15 18:17:37] 2026-02-15 17:16:54,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 18:17:37] 2026-02-15 17:16:54,803 | INFO     | **************************************
[2026-02-15 18:17:37] 2026-02-15 17:16:54,804 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 18:17:37] 2026-02-15 17:16:54,804 | INFO     | **************************************
[2026-02-15 18:17:37] 2026-02-15 17:16:54,804 | INFO     | 
[2026-02-15 18:17:37] 2026-02-15 17:16:54,804 | INFO     | architecture information:
[2026-02-15 18:17:37] 2026-02-15 17:16:54,804 | INFO     | executing command: cat /etc/os-release
[2026-02-15 18:17:37] 2026-02-15 17:16:54,812 | INFO     | cat /etc/os-release:
[2026-02-15 18:17:37] NAME="CentOS Linux"
[2026-02-15 18:17:37] VERSION="7 (Core)"
[2026-02-15 18:17:37] ID="centos"
[2026-02-15 18:17:37] ID_LIKE="rhel fedora"
[2026-02-15 18:17:37] VERSION_ID="7"
[2026-02-15 18:17:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 18:17:37] ANSI_COLOR="0;31"
[2026-02-15 18:17:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 18:17:37] HOME_URL="https://www.centos.org/"
[2026-02-15 18:17:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 18:17:37] 
[2026-02-15 18:17:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 18:17:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 18:17:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 18:17:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 18:17:37] 
[2026-02-15 18:17:37] 2026-02-15 17:16:54,812 | INFO     | **************************************
[2026-02-15 18:17:37] 2026-02-15 17:16:55,316 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | INFO     | sufficient remaining disk space (323285417984 B)
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | INFO     | update_server=False
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | INFO     | aborting loop
[2026-02-15 18:17:37] 2026-02-15 17:16:55,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 18:17:37] 2026-02-15 17:16:55,573 | INFO     | all payload control threads have been joined
[2026-02-15 18:17:37] 2026-02-15 17:16:56,107 | INFO     | all data control threads have been joined
[2026-02-15 18:17:37] 2026-02-15 17:16:56,270 | INFO     | all job control threads have been joined
[2026-02-15 18:17:37] 2026-02-15 17:16:56,334 | INFO     | [job] queue monitor thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,335 | INFO     | [job] job monitor thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,336 | INFO     | [job] retrieve thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,365 | INFO     | [payload] failed_post thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,411 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,422 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 18:17:37] 2026-02-15 17:16:56,579 | INFO     | [payload] control thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,944 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:56,960 | INFO     | [payload] validate_post thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:57,113 | INFO     | [data] control thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:57,276 | INFO     | [job] control thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:57,704 | INFO     | [data] copytool_in thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:57,762 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:57,836 | INFO     | [job] validate thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:58,432 | INFO     | [data] copytool_out thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:16:58,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 18:17:37] 2026-02-15 17:17:02,731 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 18:17:37] 2026-02-15 17:17:13,787 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-02-15 18:17:37] 2026-02-15 17:17:26,415 | INFO     | PID=3137146 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-15 18:17:37] 2026-02-15 17:17:26,415 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 18:17:37] 2026-02-15 17:17:26,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 18:17:37] 2026-02-15 17:17:26,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 18:17:37] 2026-02-15 17:17:32,395 | INFO     | [monitor] cgroup control has ended
[2026-02-15 18:17:37] 2026-02-15 17:17:32,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851485775680)>', '<ExcThread(monitor, started 139850762147584)>']
[2026-02-15 18:17:37] 2026-02-15 17:17:33,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 18:17:37] 2026-02-15 17:17:33,453 | INFO     | [monitor] control thread has ended
[2026-02-15 18:17:37] 2026-02-15 17:17:37,587 | INFO     | all workflow threads have been joined
[2026-02-15 18:17:37] 2026-02-15 17:17:37,587 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 18:17:37] 2026-02-15 17:17:37,588 | INFO     | traces error code: 0
[2026-02-15 18:17:37] 2026-02-15 17:17:37,588 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 18:17:37] 2026-02-15 17:17:37,630 [wrapper] ==== pilot stdout END ====
[2026-02-15 18:17:37] 2026-02-15 17:17:37,632 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 18:17:37] 2026-02-15 17:17:37,635 [wrapper] pilotpid: 3137146
[2026-02-15 18:17:37] 2026-02-15 17:17:37,637 [wrapper] Pilot exit status: 0
[2026-02-15 18:17:37] 2026-02-15 17:17:37,644 [wrapper] pandaids: 7010913808
[2026-02-15 18:17:37] 2026-02-15 17:17:37,657 [wrapper] cleanup supervisor_pilot 3146509 3137147
[2026-02-15 18:17:37] 2026-02-15 17:17:37,659 [wrapper] Test setup, not cleaning
[2026-02-15 18:17:37] 2026-02-15 17:17:37,661 [wrapper] apfmon messages muted
[2026-02-15 18:17:37] 2026-02-15 17:17:37,663 [wrapper] ==== wrapper stdout END ====
[2026-02-15 18:17:37] 2026-02-15 17:17:37,665 [wrapper] ==== wrapper stderr END ====
[2026-02-15 18:17:37]  *** Error codes and diagnostics ***
[2026-02-15 18:17:37]     "exeErrorCode": 0,
[2026-02-15 18:17:37]     "exeErrorDiag": "",
[2026-02-15 18:17:37]     "pilotErrorCode": 0,
[2026-02-15 18:17:37]     "pilotErrorDiag": "",
[2026-02-15 18:17:37]  *** Listing of results directory ***
[2026-02-15 18:17:37] total 663140
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc    584627 Feb 15 04:23 pilot3.tar.gz
[2026-02-15 18:17:37] -rwx------ 1 boinc boinc     36322 Feb 15 04:25 runpilot2-wrapper.sh
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc      5111 Feb 15 04:28 queuedata.json
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc       100 Feb 15 16:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 18:17:37] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 16:17 run_atlas
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc       105 Feb 15 16:17 job.xml
[2026-02-15 18:17:37] -rw-r--r-- 2 boinc boinc 491491084 Feb 15 16:17 EVNT.48442096._000177.pool.root.1
[2026-02-15 18:17:37] -rw-r--r-- 2 boinc boinc    597958 Feb 15 16:17 input.tar.gz
[2026-02-15 18:17:37] -rw-r--r-- 2 boinc boinc     15845 Feb 15 16:17 start_atlas.sh
[2026-02-15 18:17:37] drwxrwx--x 2 boinc boinc      4096 Feb 15 16:17 shared
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc         0 Feb 15 16:17 boinc_setup_complete
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc      6206 Feb 15 16:17 init_data.xml
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc         0 Feb 15 16:17 boinc_lockfile
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc      2529 Feb 15 16:17 pandaJob.out
[2026-02-15 18:17:37] -rw------- 1 boinc boinc   1000992 Feb 15 16:17 agis_schedconf.cvmfs.json
[2026-02-15 18:17:37] -rw------- 1 boinc boinc   1513015 Feb 15 16:17 agis_ddmendpoints.agis.ALL.json
[2026-02-15 18:17:37] -rw------- 1 boinc boinc       428 Feb 15 16:17 workernode_map.json
[2026-02-15 18:17:37] drwx------ 5 boinc boinc      4096 Feb 15 16:17 pilot3
[2026-02-15 18:17:37] -rw------- 1 boinc boinc 180997780 Feb 15 18:16 HITS.48442098._009678.pool.root.1
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc       531 Feb 15 18:16 boinc_task_state.xml
[2026-02-15 18:17:37] -rw------- 1 boinc boinc        95 Feb 15 18:16 pilot_heartbeat.json
[2026-02-15 18:17:37] -rw------- 1 boinc boinc      1028 Feb 15 18:16 memory_monitor_summary.json
[2026-02-15 18:17:37] -rw------- 1 boinc boinc    294463 Feb 15 18:16 log.48442098._009678.job.log.tgz.1
[2026-02-15 18:17:37] -rw------- 1 boinc boinc      6307 Feb 15 18:16 heartbeat.json
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc        27 Feb 15 18:17 wrapper_checkpoint.txt
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc      8192 Feb 15 18:17 boinc_mmap_file
[2026-02-15 18:17:37] -rw------- 1 boinc boinc      4748 Feb 15 18:17 pilotlog.txt
[2026-02-15 18:17:37] -rw------- 1 boinc boinc   1031530 Feb 15 18:17 log.48442098._009678.job.log.1
[2026-02-15 18:17:37] -rw------- 1 boinc boinc       357 Feb 15 18:17 output.list
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc       620 Feb 15 18:17 runtime_log
[2026-02-15 18:17:37] -rw------- 1 boinc boinc   1341440 Feb 15 18:17 result.tar.gz
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc      8911 Feb 15 18:17 runtime_log.err
[2026-02-15 18:17:37] -rw------- 1 boinc boinc       660 Feb 15 18:17 Y0ZMDmSwhB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkqoKDmXw1MPo.diag
[2026-02-15 18:17:37] -rw-r--r-- 1 boinc boinc     11517 Feb 15 18:17 stderr.txt
[2026-02-15 18:17:37] HITS file was successfully produced:
[2026-02-15 18:17:37] -rw------- 1 boinc boinc 180997780 Feb 15 18:16 shared/HITS.pool.root.1
[2026-02-15 18:17:37]  *** Contents of shared directory: ***
[2026-02-15 18:17:37] total 658648
[2026-02-15 18:17:37] -rw-r--r-- 2 boinc boinc 491491084 Feb 15 16:17 ATLAS.root_0
[2026-02-15 18:17:37] -rw-r--r-- 2 boinc boinc    597958 Feb 15 16:17 input.tar.gz
[2026-02-15 18:17:37] -rw-r--r-- 2 boinc boinc     15845 Feb 15 16:17 start_atlas.sh
[2026-02-15 18:17:37] -rw------- 1 boinc boinc 180997780 Feb 15 18:16 HITS.pool.root.1
[2026-02-15 18:17:37] -rw------- 1 boinc boinc   1341440 Feb 15 18:17 result.tar.gz
18:17:39 (3133123): run_atlas exited; CPU time 13861.229781
18:17:39 (3133123): called boinc_finish(0)

</stderr_txt>
]]>

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