Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:53:01 (4126213): wrapper (7.7.26015): starting
14:53:01 (4126213): wrapper: running run_atlas (--nthreads 3)
[2026-02-15 14:53:02] Arguments: --nthreads 3
[2026-02-15 14:53:02] Threads: 3
[2026-02-15 14:53:02] Checking for CVMFS
[2026-02-15 14:53:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 14:53:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 14:53:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 14:53:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 14:53:02] 2.9.2.0 4025606 863 58232 156267 2 188 20703636 36864000 0 130560 0 284008 99.978 28786 20874 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 14:53:02] CVMFS is ok
[2026-02-15 14:53:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 14:53:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 14:53:02] Further information can be found at the LHC@home message board.
[2026-02-15 14:53:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 14:53:02] Checking for apptainer binary...
[2026-02-15 14:53:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 14:53:02] Running /usr/bin/apptainer --version
[2026-02-15 14:53:03] apptainer version 1.4.1-1.1
[2026-02-15 14:53:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 14:53:03] atlasA221b
[2026-02-15 14:53:03] apptainer works
[2026-02-15 14:53:03] Set ATHENA_PROC_NUMBER=3
[2026-02-15 14:53:03] Set ATHENA_CORE_NUMBER=3
[2026-02-15 14:53:03] Starting ATLAS job with PandaID=7010908099
[2026-02-15 14:53:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 16:22:38]  *** The last 200 lines of the pilot log: ***
[2026-02-15 16:22:38] 2026-02-15 15:22:24,678 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-15 16:22:38] 2026-02-15 15:22:24,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-15 16:22:38] 2026-02-15 15:22:24,678 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-15 16:22:38] 2026-02-15 15:22:24,678 | INFO     | job 7010908099 has completed (purged errors)
[2026-02-15 16:22:38] 2026-02-15 15:22:24,678 | INFO     | overall cleanup function is called
[2026-02-15 16:22:38] 2026-02-15 15:22:25,685 | INFO     | --- collectZombieJob: --- 10, [4134697]
[2026-02-15 16:22:38] 2026-02-15 15:22:25,686 | INFO     | zombie collector waiting for pid 4134697
[2026-02-15 16:22:38] 2026-02-15 15:22:25,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-15 16:22:38] 2026-02-15 15:22:25,686 | INFO     | collected zombie processes
[2026-02-15 16:22:38] 2026-02-15 15:22:25,687 | INFO     | will attempt to kill all subprocesses of pid=4134697
[2026-02-15 16:22:38] 2026-02-15 15:22:25,740 | INFO     | process IDs to be killed: [4134697] (in reverse order)
[2026-02-15 16:22:38] 2026-02-15 15:22:25,771 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 16:22:38] 2026-02-15 15:22:25,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 16:22:38] 2026-02-15 15:22:25,773 | INFO     | did not find any defunct processes belonging to 4134697
[2026-02-15 16:22:38] 2026-02-15 15:22:25,774 | INFO     | did not find any defunct processes belonging to 4134697
[2026-02-15 16:22:38] 2026-02-15 15:22:25,774 | INFO     | ready for new job
[2026-02-15 16:22:38] 2026-02-15 15:22:25,774 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 16:22:38] 2026-02-15 15:22:25,775 | INFO     | **************************************
[2026-02-15 16:22:38] 2026-02-15 15:22:25,775 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 16:22:38] 2026-02-15 15:22:25,775 | INFO     | **************************************
[2026-02-15 16:22:38] 2026-02-15 15:22:25,775 | INFO     | 
[2026-02-15 16:22:38] 2026-02-15 15:22:25,775 | INFO     | architecture information:
[2026-02-15 16:22:38] 2026-02-15 15:22:25,775 | INFO     | executing command: cat /etc/os-release
[2026-02-15 16:22:38] 2026-02-15 15:22:25,784 | INFO     | cat /etc/os-release:
[2026-02-15 16:22:38] NAME="CentOS Linux"
[2026-02-15 16:22:38] VERSION="7 (Core)"
[2026-02-15 16:22:38] ID="centos"
[2026-02-15 16:22:38] ID_LIKE="rhel fedora"
[2026-02-15 16:22:38] VERSION_ID="7"
[2026-02-15 16:22:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 16:22:38] ANSI_COLOR="0;31"
[2026-02-15 16:22:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 16:22:38] HOME_URL="https://www.centos.org/"
[2026-02-15 16:22:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 16:22:38] 
[2026-02-15 16:22:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 16:22:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 16:22:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 16:22:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 16:22:38] 
[2026-02-15 16:22:38] 2026-02-15 15:22:25,784 | INFO     | **************************************
[2026-02-15 16:22:38] 2026-02-15 15:22:26,288 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 16:22:38] 2026-02-15 15:22:26,301 | INFO     | sufficient remaining disk space (336883351552 B)
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | INFO     | update_server=False
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 16:22:38] 2026-02-15 15:22:26,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 16:22:38] 2026-02-15 15:22:26,585 | INFO     | [monitor] cgroup control has ended
[2026-02-15 16:22:38] 2026-02-15 15:22:26,687 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-15 16:22:38] 2026-02-15 15:22:26,687 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-15 16:22:38] 2026-02-15 15:22:26,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 16:22:38] 2026-02-15 15:22:26,688 | INFO     | will abort loop
[2026-02-15 16:22:38] 2026-02-15 15:22:26,708 | INFO     | all payload control threads have been joined
[2026-02-15 16:22:38] 2026-02-15 15:22:26,906 | INFO     | all data control threads have been joined
[2026-02-15 16:22:38] 2026-02-15 15:22:27,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 16:22:38] 2026-02-15 15:22:27,307 | INFO     | [job] retrieve thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:27,308 | INFO     | [job] queue monitor thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:27,521 | INFO     | job.realtimelogging is not enabled
[2026-02-15 16:22:38] 2026-02-15 15:22:27,652 | INFO     | all job control threads have been joined
[2026-02-15 16:22:38] 2026-02-15 15:22:27,694 | INFO     | [job] job monitor thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:27,714 | INFO     | [payload] control thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:27,805 | INFO     | [job] validate thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:27,811 | INFO     | [payload] failed_post thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:27,834 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:27,912 | INFO     | [data] control thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:28,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 16:22:38] 2026-02-15 15:22:28,038 | INFO     | [data] copytool_in thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:28,112 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:28,244 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:28,524 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:28,657 | INFO     | [job] control thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:28,670 | INFO     | [payload] validate_post thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:29,102 | INFO     | [data] copytool_out thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:32,038 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 16:22:38] 2026-02-15 15:22:33,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139649618712384)>', '<ExcThread(monitor, started 139648739288832)>']
[2026-02-15 16:22:38] 2026-02-15 15:22:33,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 16:22:38] 2026-02-15 15:22:33,340 | INFO     | [monitor] control thread has ended
[2026-02-15 16:22:38] 2026-02-15 15:22:38,254 | INFO     | all workflow threads have been joined
[2026-02-15 16:22:38] 2026-02-15 15:22:38,254 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 16:22:38] 2026-02-15 15:22:38,255 | INFO     | traces error code: 0
[2026-02-15 16:22:38] 2026-02-15 15:22:38,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 16:22:38] 2026-02-15 15:22:38,300 [wrapper] ==== pilot stdout END ====
[2026-02-15 16:22:38] 2026-02-15 15:22:38,303 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 16:22:38] 2026-02-15 15:22:38,306 [wrapper] pilotpid: 4130262
[2026-02-15 16:22:38] 2026-02-15 15:22:38,309 [wrapper] Pilot exit status: 0
[2026-02-15 16:22:38] 2026-02-15 15:22:38,317 [wrapper] pandaids: 7010908099
[2026-02-15 16:22:38] 2026-02-15 15:22:38,337 [wrapper] cleanup supervisor_pilot 4139932 4130263
[2026-02-15 16:22:38] 2026-02-15 15:22:38,340 [wrapper] Test setup, not cleaning
[2026-02-15 16:22:38] 2026-02-15 15:22:38,343 [wrapper] apfmon messages muted
[2026-02-15 16:22:38] 2026-02-15 15:22:38,346 [wrapper] ==== wrapper stdout END ====
[2026-02-15 16:22:38] 2026-02-15 15:22:38,349 [wrapper] ==== wrapper stderr END ====
[2026-02-15 16:22:38]  *** Error codes and diagnostics ***
[2026-02-15 16:22:38]     "exeErrorCode": 0,
[2026-02-15 16:22:38]     "exeErrorDiag": "",
[2026-02-15 16:22:38]     "pilotErrorCode": 0,
[2026-02-15 16:22:38]     "pilotErrorDiag": "",
[2026-02-15 16:22:38]  *** Listing of results directory ***
[2026-02-15 16:22:38] total 673332
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc    584627 Feb 15 04:23 pilot3.tar.gz
[2026-02-15 16:22:38] -rwx------ 1 boinc boinc     36322 Feb 15 04:23 runpilot2-wrapper.sh
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc      5111 Feb 15 04:24 queuedata.json
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc       100 Feb 15 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 16:22:38] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 14:53 run_atlas
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc       105 Feb 15 14:53 job.xml
[2026-02-15 16:22:38] -rw-r--r-- 2 boinc boinc 505846099 Feb 15 14:53 EVNT.48442096._000171.pool.root.1
[2026-02-15 16:22:38] -rw-r--r-- 2 boinc boinc    597959 Feb 15 14:53 input.tar.gz
[2026-02-15 16:22:38] -rw-r--r-- 2 boinc boinc     15845 Feb 15 14:53 start_atlas.sh
[2026-02-15 16:22:38] drwxrwx--x 2 boinc boinc      4096 Feb 15 14:53 shared
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc         0 Feb 15 14:53 boinc_setup_complete
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc      6199 Feb 15 14:53 init_data.xml
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc         0 Feb 15 14:53 boinc_lockfile
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc      2530 Feb 15 14:53 pandaJob.out
[2026-02-15 16:22:38] -rw------- 1 boinc boinc   1000992 Feb 15 14:53 agis_schedconf.cvmfs.json
[2026-02-15 16:22:38] -rw------- 1 boinc boinc   1513015 Feb 15 14:53 agis_ddmendpoints.agis.ALL.json
[2026-02-15 16:22:38] -rw------- 1 boinc boinc       430 Feb 15 14:53 workernode_map.json
[2026-02-15 16:22:38] drwx------ 5 boinc boinc      4096 Feb 15 14:53 pilot3
[2026-02-15 16:22:38] -rw------- 1 boinc boinc        95 Feb 15 16:21 pilot_heartbeat.json
[2026-02-15 16:22:38] -rw------- 1 boinc boinc 177583427 Feb 15 16:22 HITS.48442098._009388.pool.root.1
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc       530 Feb 15 16:22 boinc_task_state.xml
[2026-02-15 16:22:38] -rw------- 1 boinc boinc      1032 Feb 15 16:22 memory_monitor_summary.json
[2026-02-15 16:22:38] -rw------- 1 boinc boinc    295293 Feb 15 16:22 log.48442098._009388.job.log.tgz.1
[2026-02-15 16:22:38] -rw------- 1 boinc boinc      6312 Feb 15 16:22 heartbeat.json
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc      8192 Feb 15 16:22 boinc_mmap_file
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc        27 Feb 15 16:22 wrapper_checkpoint.txt
[2026-02-15 16:22:38] -rw------- 1 boinc boinc      4810 Feb 15 16:22 pilotlog.txt
[2026-02-15 16:22:38] -rw------- 1 boinc boinc    777450 Feb 15 16:22 log.48442098._009388.job.log.1
[2026-02-15 16:22:38] -rw------- 1 boinc boinc       357 Feb 15 16:22 output.list
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc       620 Feb 15 16:22 runtime_log
[2026-02-15 16:22:38] -rw------- 1 boinc boinc   1085440 Feb 15 16:22 result.tar.gz
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc      8916 Feb 15 16:22 runtime_log.err
[2026-02-15 16:22:38] -rw------- 1 boinc boinc       661 Feb 15 16:22 8CAMDmeuhB9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6ioKDmtyHH3n.diag
[2026-02-15 16:22:38] -rw-r--r-- 1 boinc boinc     11356 Feb 15 16:22 stderr.txt
[2026-02-15 16:22:38] HITS file was successfully produced:
[2026-02-15 16:22:38] -rw------- 1 boinc boinc 177583427 Feb 15 16:22 shared/HITS.pool.root.1
[2026-02-15 16:22:38]  *** Contents of shared directory: ***
[2026-02-15 16:22:38] total 669084
[2026-02-15 16:22:38] -rw-r--r-- 2 boinc boinc 505846099 Feb 15 14:53 ATLAS.root_0
[2026-02-15 16:22:38] -rw-r--r-- 2 boinc boinc    597959 Feb 15 14:53 input.tar.gz
[2026-02-15 16:22:38] -rw-r--r-- 2 boinc boinc     15845 Feb 15 14:53 start_atlas.sh
[2026-02-15 16:22:38] -rw------- 1 boinc boinc 177583427 Feb 15 16:22 HITS.pool.root.1
[2026-02-15 16:22:38] -rw------- 1 boinc boinc   1085440 Feb 15 16:22 result.tar.gz
16:22:39 (4126213): run_atlas exited; CPU time 15341.457664
16:22:39 (4126213): called boinc_finish(0)

</stderr_txt>
]]>

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