Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:34:20 (4083021): wrapper (7.7.26015): starting
08:34:20 (4083021): wrapper: running run_atlas (--nthreads 3)
[2026-02-15 08:34:20] Arguments: --nthreads 3
[2026-02-15 08:34:20] Threads: 3
[2026-02-15 08:34:20] Checking for CVMFS
[2026-02-15 08:34:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-15 08:34:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-15 08:34:22] Running cvmfs_config stat atlas.cern.ch
[2026-02-15 08:34:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-15 08:34:22] 2.9.2.0 4025606 484 55348 156261 0 50 20662214 36864000 0 130560 0 162148 99.974 20502 20359 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-15 08:34:22] CVMFS is ok
[2026-02-15 08:34:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-15 08:34:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-15 08:34:22] Further information can be found at the LHC@home message board.
[2026-02-15 08:34:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-15 08:34:22] Checking for apptainer binary...
[2026-02-15 08:34:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-15 08:34:22] Running /usr/bin/apptainer --version
[2026-02-15 08:34:22] apptainer version 1.4.1-1.1
[2026-02-15 08:34:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-15 08:34:22] atlasA221b
[2026-02-15 08:34:22] apptainer works
[2026-02-15 08:34:22] Set ATHENA_PROC_NUMBER=3
[2026-02-15 08:34:22] Set ATHENA_CORE_NUMBER=3
[2026-02-15 08:34:22] Starting ATLAS job with PandaID=7010380122
[2026-02-15 08:34:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-15 10:53:54]  *** The last 200 lines of the pilot log: ***
[2026-02-15 10:53:54] 2026-02-15 09:53:15,436 | INFO     | collected zombie processes
[2026-02-15 10:53:54] 2026-02-15 09:53:15,436 | INFO     | will attempt to kill all subprocesses of pid=4091490
[2026-02-15 10:53:54] 2026-02-15 09:53:15,525 | INFO     | process IDs to be killed: [4091490] (in reverse order)
[2026-02-15 10:53:54] 2026-02-15 09:53:15,557 | WARNING  | found no corresponding commands to process id(s)
[2026-02-15 10:53:54] 2026-02-15 09:53:15,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-15 10:53:54] 2026-02-15 09:53:15,558 | INFO     | did not find any defunct processes belonging to 4091490
[2026-02-15 10:53:54] 2026-02-15 09:53:15,560 | INFO     | did not find any defunct processes belonging to 4091490
[2026-02-15 10:53:54] 2026-02-15 09:53:15,560 | INFO     | ready for new job
[2026-02-15 10:53:54] 2026-02-15 09:53:15,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-15 10:53:54] 2026-02-15 09:53:15,561 | INFO     | **************************************
[2026-02-15 10:53:54] 2026-02-15 09:53:15,561 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-15 10:53:54] 2026-02-15 09:53:15,561 | INFO     | **************************************
[2026-02-15 10:53:54] 2026-02-15 09:53:15,561 | INFO     | 
[2026-02-15 10:53:54] 2026-02-15 09:53:15,561 | INFO     | architecture information:
[2026-02-15 10:53:54] 2026-02-15 09:53:15,561 | INFO     | executing command: cat /etc/os-release
[2026-02-15 10:53:54] 2026-02-15 09:53:15,571 | INFO     | cat /etc/os-release:
[2026-02-15 10:53:54] NAME="CentOS Linux"
[2026-02-15 10:53:54] VERSION="7 (Core)"
[2026-02-15 10:53:54] ID="centos"
[2026-02-15 10:53:54] ID_LIKE="rhel fedora"
[2026-02-15 10:53:54] VERSION_ID="7"
[2026-02-15 10:53:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-15 10:53:54] ANSI_COLOR="0;31"
[2026-02-15 10:53:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-15 10:53:54] HOME_URL="https://www.centos.org/"
[2026-02-15 10:53:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-15 10:53:54] 
[2026-02-15 10:53:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-15 10:53:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-15 10:53:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-15 10:53:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-15 10:53:54] 
[2026-02-15 10:53:54] 2026-02-15 09:53:15,571 | INFO     | **************************************
[2026-02-15 10:53:54] 2026-02-15 09:53:16,074 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-15 10:53:54] 2026-02-15 09:53:16,087 | INFO     | sufficient remaining disk space (337861672960 B)
[2026-02-15 10:53:54] 2026-02-15 09:53:16,087 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | INFO     | current server update state: UPDATING_FINAL
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | INFO     | update_server=False
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | INFO     | found 0 job(s) in 20 queues
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-15 10:53:54] 2026-02-15 09:53:16,088 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-15 10:53:54] 2026-02-15 09:53:16,520 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-15 10:53:54] 2026-02-15 09:53:16,520 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-15 10:53:54] 2026-02-15 09:53:16,521 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-15 10:53:54] 2026-02-15 09:53:16,521 | INFO     | will abort loop
[2026-02-15 10:53:54] 2026-02-15 09:53:16,916 | INFO     | all data control threads have been joined
[2026-02-15 10:53:54] 2026-02-15 09:53:17,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-15 10:53:54] 2026-02-15 09:53:17,090 | INFO     | [job] queue monitor thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:17,093 | INFO     | [job] retrieve thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:17,116 | INFO     | all payload control threads have been joined
[2026-02-15 10:53:54] 2026-02-15 09:53:17,171 | INFO     | [data] copytool_in thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:17,210 | INFO     | [job] validate thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:17,433 | INFO     | all job control threads have been joined
[2026-02-15 10:53:54] 2026-02-15 09:53:17,491 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:17,526 | INFO     | [job] job monitor thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:17,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-15 10:53:54] 2026-02-15 09:53:17,650 | INFO     | [payload] validate_post thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:17,922 | INFO     | [data] control thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:18,122 | INFO     | [payload] control thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:18,308 | INFO     | [job] create_data_payload thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:18,388 | INFO     | [payload] execute_payloads thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:18,439 | INFO     | [job] control thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:18,452 | INFO     | [payload] validate_pre thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:18,693 | INFO     | [payload] failed_post thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:19,074 | INFO     | [data] copytool_out thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:21,600 | INFO     | [data] queue_monitor thread has finished
[2026-02-15 10:53:54] 2026-02-15 09:53:48,330 | INFO     | [monitor] cgroup control has ended
[2026-02-15 10:53:54] 2026-02-15 09:53:49,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237948966720)>', '<ExcThread(monitor, started 140237309204224)>']
[2026-02-15 10:53:54] 2026-02-15 09:53:50,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-15 10:53:54] 2026-02-15 09:53:50,260 | INFO     | [monitor] control thread has ended
[2026-02-15 10:53:54] 2026-02-15 09:53:54,435 | INFO     | all workflow threads have been joined
[2026-02-15 10:53:54] 2026-02-15 09:53:54,435 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-15 10:53:54] 2026-02-15 09:53:54,435 | INFO     | traces error code: 0
[2026-02-15 10:53:54] 2026-02-15 09:53:54,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-15 10:53:54] 2026-02-15 09:53:54,485 [wrapper] ==== pilot stdout END ====
[2026-02-15 10:53:54] 2026-02-15 09:53:54,488 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-15 10:53:54] 2026-02-15 09:53:54,490 [wrapper] pilotpid: 4087058
[2026-02-15 10:53:54] 2026-02-15 09:53:54,493 [wrapper] Pilot exit status: 0
[2026-02-15 10:53:54] 2026-02-15 09:53:54,501 [wrapper] pandaids: 7010380122
[2026-02-15 10:53:54] 2026-02-15 09:53:54,522 [wrapper] cleanup supervisor_pilot 4097402 4087059
[2026-02-15 10:53:54] 2026-02-15 09:53:54,525 [wrapper] Test setup, not cleaning
[2026-02-15 10:53:54] 2026-02-15 09:53:54,528 [wrapper] apfmon messages muted
[2026-02-15 10:53:54] 2026-02-15 09:53:54,531 [wrapper] ==== wrapper stdout END ====
[2026-02-15 10:53:54] 2026-02-15 09:53:54,534 [wrapper] ==== wrapper stderr END ====
[2026-02-15 10:53:54]  *** Error codes and diagnostics ***
[2026-02-15 10:53:54]     "exeErrorCode": 0,
[2026-02-15 10:53:54]     "exeErrorDiag": "",
[2026-02-15 10:53:54]     "pilotErrorCode": 0,
[2026-02-15 10:53:54]     "pilotErrorDiag": "",
[2026-02-15 10:53:54]  *** Listing of results directory ***
[2026-02-15 10:53:54] total 936464
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc    584627 Feb 15 00:42 pilot3.tar.gz
[2026-02-15 10:53:54] -rwx------ 1 boinc boinc     36322 Feb 15 00:44 runpilot2-wrapper.sh
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc      5111 Feb 15 00:48 queuedata.json
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc       100 Feb 15 08:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-15 10:53:54] -rwxr-xr-x 1 boinc boinc      7986 Feb 15 08:34 run_atlas
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc       105 Feb 15 08:34 job.xml
[2026-02-15 10:53:54] -rw-r--r-- 2 boinc boinc 675085859 Feb 15 08:34 EVNT.48508760._000069.pool.root.1
[2026-02-15 10:53:54] -rw-r--r-- 2 boinc boinc    597947 Feb 15 08:34 input.tar.gz
[2026-02-15 10:53:54] -rw-r--r-- 2 boinc boinc     15845 Feb 15 08:34 start_atlas.sh
[2026-02-15 10:53:54] drwxrwx--x 2 boinc boinc      4096 Feb 15 08:34 shared
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc         0 Feb 15 08:34 boinc_setup_complete
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc      6199 Feb 15 08:34 init_data.xml
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc         0 Feb 15 08:34 boinc_lockfile
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc      2549 Feb 15 08:34 pandaJob.out
[2026-02-15 10:53:54] -rw------- 1 boinc boinc   1000934 Feb 15 08:34 agis_schedconf.cvmfs.json
[2026-02-15 10:53:54] -rw------- 1 boinc boinc   1513015 Feb 15 08:34 agis_ddmendpoints.agis.ALL.json
[2026-02-15 10:53:54] -rw------- 1 boinc boinc       430 Feb 15 08:34 workernode_map.json
[2026-02-15 10:53:54] drwx------ 5 boinc boinc      4096 Feb 15 08:34 pilot3
[2026-02-15 10:53:54] -rw------- 1 boinc boinc        95 Feb 15 10:52 pilot_heartbeat.json
[2026-02-15 10:53:54] -rw------- 1 boinc boinc 276971986 Feb 15 10:52 HITS.48508763._003544.pool.root.1
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc       530 Feb 15 10:52 boinc_task_state.xml
[2026-02-15 10:53:54] -rw------- 1 boinc boinc      1021 Feb 15 10:53 memory_monitor_summary.json
[2026-02-15 10:53:54] -rw------- 1 boinc boinc    292266 Feb 15 10:53 log.48508763._003544.job.log.tgz.1
[2026-02-15 10:53:54] -rw------- 1 boinc boinc      6323 Feb 15 10:53 heartbeat.json
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc      8192 Feb 15 10:53 boinc_mmap_file
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc        27 Feb 15 10:53 wrapper_checkpoint.txt
[2026-02-15 10:53:54] -rw------- 1 boinc boinc      4738 Feb 15 10:53 pilotlog.txt
[2026-02-15 10:53:54] -rw------- 1 boinc boinc   1188002 Feb 15 10:53 log.48508763._003544.job.log.1
[2026-02-15 10:53:54] -rw------- 1 boinc boinc       357 Feb 15 10:53 output.list
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc       620 Feb 15 10:53 runtime_log
[2026-02-15 10:53:54] -rw------- 1 boinc boinc   1495040 Feb 15 10:53 result.tar.gz
[2026-02-15 10:53:54] -rw------- 1 boinc boinc       661 Feb 15 10:53 yXnLDmaUeB9n9Rq4apOajLDm4fhM0noT9bVooX4SDmHUnKDmVA2QUm.diag
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc      8916 Feb 15 10:53 runtime_log.err
[2026-02-15 10:53:54] -rw-r--r-- 1 boinc boinc     10432 Feb 15 10:53 stderr.txt
[2026-02-15 10:53:54] HITS file was successfully produced:
[2026-02-15 10:53:54] -rw------- 1 boinc boinc 276971986 Feb 15 10:52 shared/HITS.pool.root.1
[2026-02-15 10:53:54]  *** Contents of shared directory: ***
[2026-02-15 10:53:54] total 931816
[2026-02-15 10:53:54] -rw-r--r-- 2 boinc boinc 675085859 Feb 15 08:34 ATLAS.root_0
[2026-02-15 10:53:54] -rw-r--r-- 2 boinc boinc    597947 Feb 15 08:34 input.tar.gz
[2026-02-15 10:53:54] -rw-r--r-- 2 boinc boinc     15845 Feb 15 08:34 start_atlas.sh
[2026-02-15 10:53:54] -rw------- 1 boinc boinc 276971986 Feb 15 10:52 HITS.pool.root.1
[2026-02-15 10:53:54] -rw------- 1 boinc boinc   1495040 Feb 15 10:53 result.tar.gz
10:53:56 (4083021): run_atlas exited; CPU time 24184.837515
10:53:56 (4083021): called boinc_finish(0)

</stderr_txt>
]]>

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